Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 7.3e-159 563.9 299 100.0
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 5.5e-66 255.4 317 54.3
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 2.5e-50 203.4 349 44.7
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 4.7e-49 199.1 332 44.3
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 5.7e-47 192.2 326 43.9
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 3.1e-45 186.4 335 43.6
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 3.9e-43 179.5 323 39.9
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 3.9e-43 179.5 340 41.8
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 5.0e-43 179.1 327 40.7
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 1.1e-42 177.9 355 42.3
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 1.1e-42 177.9 332 41.3
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 8.0e-41 171.8 322 40.4
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 8.0e-41 171.8 328 43.0
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 1.2e-39 167.9 329 41.9
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 1.2e-39 167.9 319 40.1
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 1.2e-39 167.9 326 40.5
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 5.8e-39 165.6 333 39.3
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 1.3e-38 164.5 338 39.1
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 2.9e-38 163.3 319 41.1
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 4.9e-38 162.5 319 40.8
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 3.2e-37 159.8 293 41.3
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 5.4e-37 159.1 316 37.3
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 9.2e-37 158.3 272 42.3
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 1.2e-36 157.9 343 35.6
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 7.8e-36 155.2 340 35.9
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.3e-35 154.5 330 37.3
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 2.3e-35 153.7 326 39.3
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 3.0e-35 153.3 314 39.5
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 3.0e-35 153.3 333 37.2
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 3.0e-35 153.3 342 34.5
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 3.9e-35 152.9 336 34.8
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 3.9e-35 152.9 342 33.6
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 6.6e-35 152.1 320 37.8
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 8.6e-35 151.8 355 36.9
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 1.1e-34 151.4 331 38.4
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 1.5e-34 151.0 313 39.6
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 1.9e-34 150.6 321 36.4
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 1.9e-34 150.6 325 37.2
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 2.5e-34 150.2 331 37.5
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.5e-34 150.2 325 37.2
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 3.3e-34 149.8 324 37.3
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 3.3e-34 149.8 333 37.8
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 4.3e-34 149.4 337 34.7
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 9.5e-34 148.3 320 37.2
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 1.6e-33 147.5 313 39.3
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 2.8e-33 146.7 315 38.4
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 4.7e-33 146.0 334 33.8
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 8.0e-33 145.2 326 36.8
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 1.8e-32 144.1 209 46.9
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 3.1e-32 143.3 352 36.9
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 3.1e-32 143.3 322 36.6
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 3.1e-32 143.3 327 37.0
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 3.1e-32 143.3 341 34.3
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 5.2e-32 142.5 323 37.2
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 8.9e-32 141.7 326 36.2
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 2.0e-31 140.6 322 37.0
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 2.6e-31 140.2 328 35.7
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 2.6e-31 140.2 328 36.9
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 3.4e-31 139.8 319 34.2
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 4.4e-31 139.4 315 38.7
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 5.8e-31 139.0 332 35.2
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 5.8e-31 139.0 332 35.2
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 7.5e-31 138.7 329 35.3
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.3e-30 137.9 328 37.2
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 2.2e-30 137.1 328 35.7
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 2.2e-30 137.1 470 31.7
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 2.9e-30 136.7 314 36.0
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 4.9e-30 136.0 312 34.3
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 6.4e-30 135.6 303 38.6
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 1.1e-29 134.8 318 34.6
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 1.4e-29 134.4 309 35.3
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 2.4e-29 133.7 332 33.4
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 3.2e-29 133.3 311 34.4
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 9.2e-29 131.7 323 37.2
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 1.2e-28 131.3 311 33.4
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 2.1e-28 130.6 280 40.0
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 2.1e-28 130.6 327 35.2
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 2.1e-28 130.6 322 34.2
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 2.1e-28 130.6 319 33.9
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 2.7e-28 130.2 308 35.4
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 2.7e-28 130.2 320 35.3
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 2.7e-28 130.2 320 35.3
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 3.5e-28 129.8 328 32.3
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 3.5e-28 129.8 319 34.8
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 4.6e-28 129.4 344 32.6
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 6.0e-28 129.0 321 35.2
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 7.8e-28 128.6 321 32.7
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 3.0e-27 126.7 309 35.3
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 3.0e-27 126.7 316 32.9
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 6.6e-27 125.6 328 32.6
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 8.6e-27 125.2 330 31.5
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 3.3e-26 123.2 310 33.5
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 4.3e-26 122.9 312 34.6
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 2.1e-25 120.6 307 35.8
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 3.6e-25 119.8 350 32.9
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 3.6e-25 119.8 226 36.3
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 6.2e-25 119.0 321 31.5
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 1.4e-24 117.9 309 33.0
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 5.2e-24 115.9 340 29.7
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 5.2e-24 115.9 310 32.3
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 5.2e-24 115.9 311 34.7
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 5.2e-24 115.9 323 32.2
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 8.9e-24 115.2 312 33.0
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 1.2e-23 114.8 312 33.7
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 3.4e-23 113.2 334 33.5
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 4.4e-23 112.8 322 32.3
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 5.8e-23 112.5 326 32.8
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 5.8e-23 112.5 329 31.3
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 7.5e-23 112.1 310 30.0
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 9.9e-23 111.7 310 31.6
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 2.2e-22 110.5 309 32.0
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 2.2e-22 110.5 325 32.9
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 2.9e-22 110.2 313 31.9
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 3.7e-22 109.8 313 33.5
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 8.3e-22 108.6 315 31.4
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 1.1e-21 108.2 304 31.2
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 1.9e-21 107.5 322 31.4
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 1.9e-21 107.5 323 29.7
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 1.9e-21 107.5 228 34.6
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 4.1e-21 106.3 315 32.7
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 5.4e-21 105.9 324 32.4
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 5.4e-21 105.9 309 31.4
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 5.4e-21 105.9 325 31.1
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 7.1e-21 105.5 323 31.0
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 1.2e-20 104.8 320 32.8
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 2.7e-20 103.6 313 30.4
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 2.7e-20 103.6 292 30.8
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 1.0e-19 101.7 119 49.6
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 1.3e-19 101.3 264 35.6
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 3.9e-19 99.8 311 31.5
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 1.9e-18 97.4 308 28.6
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 3.3e-18 96.7 303 30.0
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 1.2e-17 94.7 248 31.9
Lsat_1_v5_gn_2_59361 Lactuca sativa HOM05D003841 ORTHO05D004602 2.1e-17 94.0 168 40.5
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 8.1e-17 92.0 317 29.0
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 1.1e-16 91.7 313 29.1
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 1.8e-16 90.9 326 28.2
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 4.0e-16 89.7 325 30.5
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 4.0e-16 89.7 195 40.5
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 8.9e-16 88.6 242 30.6
Oeu052339.1 Olea europaea HOM05D003841 ORTHO05D004602 9.9e-15 85.1 170 38.2
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 4.2e-13 79.7 329 29.5
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 4.2e-13 79.7 217 33.2
Cpa.g.sc80.126 Carica papaya HOM05D003841 ORTHO05D004602 4.2e-13 79.7 182 37.4
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 1.2e-12 78.2 209 30.1
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 3.5e-12 76.6 219 32.0
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 1.0e-11 75.1 219 32.0
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 3.9e-11 73.2 277 32.5
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 1.9e-10 70.9 277 32.5
Sed0013484 Sechium edule HOM05D003841 ORTHO05D004602 2.5e-10 70.5 308 26.9
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 3.3e-10 70.1 296 25.0
CAN.G952.3 Capsicum annuum HOM05D003841 ORTHO05D004602 9.6e-10 68.6 191 32.5
CAN.G22.51 Capsicum annuum HOM05D000121 ORTHO05D000102 2.1e-09 67.4 115 40.9
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 6.2e-09 65.9 226 29.6
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 2.4e-08 63.9 328 25.9
Ah.04g165190 Amaranthus hybridus HOM05D003841 ORTHO05D004602 5.3e-08 62.8 197 34.0
PGR031G0981 Punica granatum HOM05D003841 ORTHO05D004602 6.9e-08 62.4 147 33.3
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 9.0e-08 62.0 269 30.5
Cpa.g.c47761 Carica papaya HOM05D003841 ORTHO05D004602 1.2e-07 61.6 118 38.1
Os03g0201000 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D049799 2.6e-07 60.5 165 31.5
Cfa021072 Carpinus fangiana HOM05D003841 ORTHO05D004602 3.4e-07 60.1 118 34.7
CsaV3_3G005690 Cucumis sativus L. HOM05D003841 ORTHO05D004602 1.3e-06 58.2 151 30.5
Phvul.005G089400 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 1.7e-06 57.8 59 49.2
VMungo1027G0001 Vigna mungo HOM05D003841 ORTHO05D004602 8.4e-06 55.5 175 27.4


User provided reference genes

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