Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 6.8e-159 563.9 282 100.0
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 4.2e-140 501.5 280 85.7
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 2.8e-136 488.8 274 83.9
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 8.1e-136 487.3 279 83.9
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 5.3e-135 484.6 278 84.2
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 2.6e-134 482.3 274 85.0
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 7.6e-134 480.7 270 84.8
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 1.0e-133 480.3 274 85.0
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 1.0e-133 480.3 281 82.2
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 2.2e-133 479.2 281 81.9
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 2.9e-133 478.8 281 81.9
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 4.9e-133 478.0 270 85.6
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 4.9e-133 478.0 270 85.6
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 6.5e-133 477.6 272 83.1
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 6.5e-133 477.6 281 81.9
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 8.4e-133 477.2 270 85.2
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 1.1e-132 476.9 270 84.4
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 1.4e-132 476.5 270 84.8
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 2.5e-132 475.7 280 80.4
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 3.2e-132 475.3 271 83.4
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 9.3e-132 473.8 272 82.4
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 1.6e-131 473.0 282 81.6
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 1.6e-131 473.0 270 84.1
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 2.1e-131 472.6 270 84.4
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 2.7e-131 472.2 281 79.7
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 2.7e-131 472.2 269 83.6
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 3.5e-131 471.9 274 82.5
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 3.5e-131 471.9 274 82.5
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 3.5e-131 471.9 270 84.4
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 4.6e-131 471.5 275 81.5
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 7.9e-131 470.7 270 83.0
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 7.9e-131 470.7 270 83.7
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 7.9e-131 470.7 270 83.7
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 1.0e-130 470.3 270 84.1
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 1.0e-130 470.3 281 79.4
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.3e-130 469.9 270 84.1
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 2.3e-130 469.2 278 79.9
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 3.0e-130 468.8 270 83.0
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 8.7e-130 467.2 270 81.9
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 1.1e-129 466.8 270 82.2
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 1.1e-129 466.8 270 81.9
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 1.1e-129 466.8 272 81.6
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.5e-129 466.5 270 83.7
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 1.5e-129 466.5 270 81.9
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 1.5e-129 466.5 270 81.1
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 1.9e-129 466.1 274 80.7
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 2.5e-129 465.7 279 79.9
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 2.5e-129 465.7 270 83.0
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 2.5e-129 465.7 270 81.5
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 3.3e-129 465.3 270 81.1
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 9.6e-129 463.8 277 79.4
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.3e-128 463.4 275 81.8
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.3e-128 463.4 275 81.8
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 2.1e-128 462.6 274 79.9
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 2.8e-128 462.2 279 78.5
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 1.1e-127 460.3 270 80.4
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 1.4e-127 459.9 262 82.8
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 1.8e-127 459.5 271 81.9
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 4.0e-127 458.4 272 80.5
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 5.3e-127 458.0 270 80.0
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 9.0e-127 457.2 271 81.5
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 9.0e-127 457.2 271 82.3
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 9.0e-127 457.2 270 80.0
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 1.5e-126 456.4 271 81.2
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 1.5e-126 456.4 271 81.2
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 2.0e-126 456.1 271 81.2
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 2.0e-126 456.1 272 77.9
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 2.0e-126 456.1 271 81.5
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 2.0e-126 456.1 272 79.0
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 2.6e-126 455.7 271 81.2
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 2.6e-126 455.7 270 80.0
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 4.5e-126 454.9 271 81.9
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 4.5e-126 454.9 272 80.1
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 7.6e-126 454.1 271 81.2
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 1.0e-125 453.8 271 80.8
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 1.7e-125 453.0 272 80.1
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 5.0e-125 451.4 306 74.8
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 1.9e-124 449.5 271 81.2
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 2.5e-124 449.1 272 76.8
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 5.5e-124 448.0 271 80.8
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 1.6e-123 446.4 270 79.3
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 2.1e-123 446.0 257 83.7
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 4.6e-123 444.9 270 79.3
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 1.3e-122 443.4 272 77.6
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 3.0e-122 442.2 304 73.7
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 3.0e-122 442.2 270 77.4
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 6.7e-122 441.0 272 75.4
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 1.9e-121 439.5 272 75.7
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 3.3e-121 438.7 270 77.0
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 2.8e-120 435.6 272 78.3
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 1.4e-119 433.3 280 75.4
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 1.2e-118 430.3 272 76.5
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 2.0e-118 429.5 270 75.9
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 2.9e-117 425.6 392 58.4
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 6.5e-117 424.5 300 69.3
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 1.2e-115 420.2 270 70.7
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 2.7e-115 419.1 291 71.8
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 4.6e-115 418.3 270 72.2
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 1.4e-114 416.8 270 70.7
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 6.7e-114 414.5 245 80.0
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 4.8e-112 408.3 270 74.4
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 8.2e-112 407.5 270 69.3
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 2.6e-110 402.5 245 76.7
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 1.0e-106 390.6 242 77.3
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 1.8e-106 389.8 220 85.9
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 3.3e-105 385.6 228 81.6
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 7.4e-105 384.4 271 66.8
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 4.8e-104 381.7 270 71.9
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 7.0e-103 377.9 272 66.5
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.5e-100 370.2 251 74.9
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 6.1e-99 364.8 220 81.8
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 1.1e-97 360.5 197 87.8
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 2.0e-94 349.7 270 63.0
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 4.7e-91 338.6 290 59.0
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 7.5e-89 331.3 267 59.6
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 8.3e-88 327.8 271 62.4
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 2.4e-87 326.2 271 62.7
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 9.1e-87 324.3 271 62.4
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 6.1e-83 311.6 180 81.1
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 5.7e-81 305.1 271 59.8
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 1.8e-79 300.1 248 62.5
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 1.5e-76 290.4 168 82.7
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 4.7e-75 285.4 276 49.3
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 5.2e-74 282.0 271 56.1
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 1.0e-69 267.7 154 81.2
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 5.0e-69 265.4 152 84.2
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 5.8e-65 251.9 165 74.5
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 1.6e-62 243.8 208 62.5
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 2.5e-52 209.9 271 47.6
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 4.3e-52 209.1 153 68.6
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 2.8e-51 206.5 272 46.0
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 3.1e-50 203.0 272 47.1
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.9e-44 183.7 180 52.8
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 2.1e-38 163.7 97 82.5
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 5.1e-37 159.1 159 56.0
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 1.3e-32 144.4 261 41.8
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 3.8e-32 142.9 185 47.6
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 3.8e-32 142.9 269 39.8
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 2.3e-29 133.7 79 74.7
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 1.9e-28 130.6 98 64.3
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 5.6e-28 129.0 261 38.3
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 1.5e-25 120.9 135 48.9
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 1.3e-24 117.9 135 48.1
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.4e-18 97.8 73 61.6
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 1.2e-17 94.7 56 78.6
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 7.9e-14 82.0 78 57.7
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 1.3e-11 74.7 45 77.8
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 6.9e-10 68.9 49 63.3
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 5.9e-09 65.9 45 73.3


User provided reference genes

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