Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009875 Daucus carota HOM05D002412 ORTHO05D002516 5.9e-92 340.9 178 100.0
DCAR_020053 Daucus carota HOM05D002412 ORTHO05D002516 1.7e-46 189.9 182 64.3
Rhsim06G0063100 Rhododendron simsii HOM05D002412 ORTHO05D002516 5.5e-21 105.1 173 46.8
Manes.18G047500 Manihot esculenta HOM05D002412 ORTHO05D002516 2.0e-18 96.7 179 45.3
Peaxi162Scf00081g00269 Petunia axillaris HOM05D002412 ORTHO05D002516 3.3e-18 95.9 191 40.8
MD08G1080400 Malus domestica HOM05D002412 ORTHO05D002516 4.4e-18 95.5 176 43.2
Nitab4.5_0003725g0030 Nicotiana tabacum HOM05D002412 ORTHO05D002516 2.2e-17 93.2 179 43.0
Actinidia19303 Actinidia chinensis HOM05D002412 ORTHO05D002516 4.8e-17 92.0 177 44.1
CSS0002290 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 4.8e-17 92.0 175 41.7
Sopen04g031330 Solanum pennellii HOM05D002412 ORTHO05D002516 8.2e-17 91.3 187 42.2
PGSC0003DMG401011556 Solanum tuberosum HOM05D002412 ORTHO05D002516 8.2e-17 91.3 179 42.5
Solyc04g077690.3 Solanum lycopersicum HOM05D002412 ORTHO05D002516 1.4e-16 90.5 183 41.5
Nitab4.5_0003953g0040 Nicotiana tabacum HOM05D002412 ORTHO05D002516 1.8e-16 90.1 182 40.1
MD15G1067500 Malus domestica HOM05D002412 ORTHO05D002516 2.4e-16 89.7 184 42.9
Nitab4.5_0000497g0080 Nicotiana tabacum HOM05D002412 ORTHO05D002516 3.1e-16 89.4 174 37.9
Sopen12g030300 Solanum pennellii HOM05D002412 ORTHO05D002516 3.1e-16 89.4 179 41.9
Ciclev10002703m.g Citrus clementina HOM05D002412 ORTHO05D002516 4.1e-16 89.0 171 43.3
Solyc12g088300.2 Solanum lycopersicum HOM05D002412 ORTHO05D002516 4.1e-16 89.0 179 41.9
Prupe.1G421400 Prunus persica HOM05D002412 ORTHO05D002516 5.3e-16 88.6 181 39.8
Thecc.08G086800 Theobroma cacao HOM05D002412 ORTHO05D002516 6.9e-16 88.2 185 41.6
Peaxi162Scf00160g00517 Petunia axillaris HOM05D002412 ORTHO05D002516 2.0e-15 86.7 168 44.0
PGSC0003DMG400010615 Solanum tuberosum HOM05D002412 ORTHO05D002516 2.0e-15 86.7 175 40.6
Dinv44944 Davidia involucrata HOM05D002412 ORTHO05D002516 2.6e-15 86.3 214 38.3
Actinidia10209 Actinidia chinensis HOM05D002412 ORTHO05D002516 3.4e-15 85.9 180 42.8
Potri.002G117600 Populus trichocarpa HOM05D002412 ORTHO05D002516 4.5e-15 85.5 175 41.1
TAR628G0919 Trochodendron aralioides HOM05D002412 ORTHO05D002516 7.7e-15 84.7 183 39.3
QL12p038263 Quercus lobata HOM05D002412 ORTHO05D002516 1.7e-14 83.6 185 40.0
TAR381G0181 Trochodendron aralioides HOM05D002412 ORTHO05D002516 2.2e-14 83.2 185 38.9
Potri.014G015000 Populus trichocarpa HOM05D002412 ORTHO05D002516 3.8e-14 82.4 171 40.4
Hma1.2p1_1059F.1_g253110 Hydrangea macrophylla HOM05D002412 ORTHO05D002516 5.0e-14 82.0 172 40.1
Gohir.D05G214100 Gossypium hirsutum HOM05D002412 ORTHO05D002516 8.5e-14 81.3 178 41.6
Sabra02G0092100 Salix brachista HOM05D002412 ORTHO05D002516 8.5e-14 81.3 173 39.3
Glyma.11G002100 Glycine max HOM05D002412 ORTHO05D002516 1.4e-13 80.5 171 38.6
Oeu036975.1 Olea europaea HOM05D002412 ORTHO05D002516 1.9e-13 80.1 170 40.6
Psat4g227320 Pisum sativum HOM05D002412 ORTHO05D002516 2.5e-13 79.7 166 39.8
CSS0009619 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 3.2e-13 79.3 180 40.6
Cfa004671 Carpinus fangiana HOM05D002412 ORTHO05D002516 3.2e-13 79.3 181 39.8
TPR.G8322 Trifolium pratense HOM05D002412 ORTHO05D002516 3.2e-13 79.3 175 37.1
QL93p0154_0003 Quercus lobata HOM05D002412 ORTHO05D002516 5.5e-13 78.6 197 36.5
Actinidia00360 Actinidia chinensis HOM05D002412 ORTHO05D002516 7.2e-13 78.2 178 38.2
Glyma.01G242100 Glycine max HOM05D002412 ORTHO05D002516 7.2e-13 78.2 180 36.1
Oeu020549.2 Olea europaea HOM05D002412 ORTHO05D002516 7.2e-13 78.2 166 41.0
Duzib041G0516 Durio zibethinus HOM05D002412 ORTHO05D002516 1.2e-12 77.4 179 39.1
Ciclev10029343m.g Citrus clementina HOM05D002412 ORTHO05D002516 1.6e-12 77.0 181 39.2
DCAR_001741 Daucus carota HOM05D002412 ORTHO05D002516 1.6e-12 77.0 179 36.3
PSO017G0848 Papaver somniferum HOM05D002412 ORTHO05D002516 1.6e-12 77.0 182 36.3
Phvul.002G051300 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 1.6e-12 77.0 167 37.7
DCAR_019349 Daucus carota HOM05D001207 ORTHO05D009015 2.1e-12 76.6 174 39.7
VMungo1215G2231 Vigna mungo HOM05D002412 ORTHO05D002516 2.1e-12 76.6 172 35.5
MSTRG.22217 Avicennia marina HOM05D002412 ORTHO05D002516 2.7e-12 76.3 190 40.0
Lj4C72T9 Lonicera japonica HOM05D002412 ORTHO05D002516 2.7e-12 76.3 161 42.2
TAR376G0005 Trochodendron aralioides HOM05D002412 ORTHO05D002516 3.6e-12 75.9 191 36.6
Glyma.10G256100 Glycine max HOM05D002412 ORTHO05D002516 6.1e-12 75.1 181 37.0
Gohir.A05G210800 Gossypium hirsutum HOM05D002412 ORTHO05D002516 6.1e-12 75.1 178 40.4
Gohir.D12G019500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 6.1e-12 75.1 176 35.8
Gorai.008G019800 Gossypium raimondii HOM05D002412 ORTHO05D002516 6.1e-12 75.1 176 35.8
Duzib052G0953 Durio zibethinus HOM05D002412 ORTHO05D002516 8.0e-12 74.7 187 38.0
Oeu048571.1 Olea europaea HOM05D002412 ORTHO05D002516 8.0e-12 74.7 178 38.2
Thecc.02G118800 Theobroma cacao HOM05D002412 ORTHO05D002516 8.0e-12 74.7 182 37.4
Gohir.A12G019300 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.0e-11 74.3 176 35.8
Actinidia34355 Actinidia chinensis HOM05D002412 ORTHO05D002516 1.4e-11 73.9 178 37.1
Lj9A329T24 Lonicera japonica HOM05D002412 ORTHO05D002516 1.4e-11 73.9 174 36.8
Dinv42242 Davidia involucrata HOM05D002412 ORTHO05D002516 2.3e-11 73.2 173 34.7
Lj9A332T16 Lonicera japonica HOM05D002412 ORTHO05D002516 3.0e-11 72.8 174 36.8
Lj1g0009349 Lotus japonicus HOM05D002412 ORTHO05D002516 3.9e-11 72.4 184 37.0
QL11p029982 Quercus lobata HOM05D002412 ORTHO05D002516 3.9e-11 72.4 191 38.2
CiPaw.08G050800 Carya illinoinensis HOM05D002412 ORTHO05D002516 5.2e-11 72.0 184 35.3
Dinv39215 Davidia involucrata HOM05D002412 ORTHO05D002516 5.2e-11 72.0 170 35.9
GSVIVG01037808001 Vitis vinifera HOM05D002412 ORTHO05D002516 5.2e-11 72.0 177 39.0
MELO3C016826.2 Cucumis melo HOM05D002412 ORTHO05D002516 6.7e-11 71.6 178 38.8
Duzib093G1945 Durio zibethinus HOM05D002412 ORTHO05D002516 6.7e-11 71.6 133 42.9
Oeu053627.1 Olea europaea HOM05D002412 ORTHO05D002516 6.7e-11 71.6 132 42.4
vmacro19537 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 6.7e-11 71.6 179 35.2
Oeu037507.3 Olea europaea HOM05D006761 ORTHO05D002516 8.8e-11 71.2 121 47.1
Aqoxy6G02560 Aquilegia oxysepala HOM05D002412 ORTHO05D002516 1.1e-10 70.9 181 38.7
CsaV3_4G000130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 1.5e-10 70.5 172 37.8
DCAR_012823 Daucus carota HOM05D002412 ORTHO05D002516 1.5e-10 70.5 200 36.0
Sc15g0005620 Simmondsia chinensis HOM05D002412 ORTHO05D002516 1.5e-10 70.5 176 37.5
ClCG10G010090 Citrullus lanatus HOM05D002412 ORTHO05D002516 2.6e-10 69.7 179 35.8
MELO3C018019.2 Cucumis melo HOM05D002412 ORTHO05D002516 2.6e-10 69.7 172 38.4
Glyma.20G135500 Glycine max HOM05D002412 ORTHO05D002516 2.6e-10 69.7 180 37.2
Nn5g30629 Nelumbo nucifera HOM05D002412 ORTHO05D002516 2.6e-10 69.7 204 35.3
Sed0022600 Sechium edule HOM05D002412 ORTHO05D002516 2.6e-10 69.7 179 40.8
PSO170G3219 Papaver somniferum HOM05D002412 ORTHO05D002516 3.3e-10 69.3 183 35.5
ECA246G2811 Erigeron canadensis HOM05D002412 ORTHO05D002516 4.4e-10 68.9 173 35.8
Gohir.A02G080700 Gossypium hirsutum HOM05D002412 ORTHO05D002516 4.4e-10 68.9 183 37.7
Gohir.D02G088500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 9.7e-10 67.8 183 38.3
Lalb_Chr11g0062941 Lupinus albus HOM05D002412 ORTHO05D002516 1.3e-09 67.4 171 35.1
Prupe.8G147000 Prunus persica HOM05D002412 ORTHO05D002516 1.3e-09 67.4 192 34.9
TWI12G0333 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 1.3e-09 67.4 169 37.3
Actinidia04390 Actinidia chinensis HOM05D002412 ORTHO05D002516 1.7e-09 67.0 164 36.0
CARHR241890 Cardamine hirsuta HOM05D002412 ORTHO05D002516 1.7e-09 67.0 168 33.9
FAN20G2155 Fragaria x ananassa HOM05D002412 ORTHO05D002516 1.7e-09 67.0 189 34.9
Gorai.005G099200 Gossypium raimondii HOM05D002412 ORTHO05D002516 1.7e-09 67.0 183 38.3
Cc10_g05040 Coffea canephora HOM05D002412 ORTHO05D002516 2.2e-09 66.6 133 41.4
Gorai.009G220800 Gossypium raimondii HOM05D002412 ORTHO05D002516 2.2e-09 66.6 119 43.7
Nn6g34504 Nelumbo nucifera HOM05D002412 ORTHO05D002516 3.7e-09 65.9 177 36.2
Oeu037285.1 Olea europaea HOM05D002412 ORTHO05D002516 3.7e-09 65.9 162 36.4
CANSAT25G2021 Cannabis sativa HOM05D002412 ORTHO05D002516 4.8e-09 65.5 181 35.9
CAN.G975.16 Capsicum annuum HOM05D002412 ORTHO05D002516 6.3e-09 65.1 173 32.9
Phvul.001G028800 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 6.3e-09 65.1 174 36.2
Phvul.007G046700 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 6.3e-09 65.1 178 37.1
VMungo0647G1017 Vigna mungo HOM05D002412 ORTHO05D002516 8.2e-09 64.7 178 36.5
HanXRQChr03g0065031 Helianthus annuus HOM05D002412 ORTHO05D002516 1.1e-08 64.3 158 34.8
TPR.G21149 Trifolium pratense HOM05D002412 ORTHO05D002516 1.1e-08 64.3 175 37.7
Cc00_g17020 Coffea canephora HOM05D002412 ORTHO05D002516 1.4e-08 63.9 119 46.2
RhsimUnG0041400 Rhododendron simsii HOM05D002412 ORTHO05D002516 1.4e-08 63.9 161 34.8
RhsimUnG0123400 Rhododendron simsii HOM05D002412 ORTHO05D002516 1.4e-08 63.9 161 34.8
unitig_21.g20629 Utricularia gibba HOM05D002412 ORTHO05D002516 1.4e-08 63.9 164 38.4
CsaV3_4G035130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 1.8e-08 63.5 180 37.8
Glyma.17G234000 Glycine max HOM05D002412 ORTHO05D002516 1.8e-08 63.5 173 35.8
Haze_10271 Corylus avellana HOM05D002412 ORTHO05D002516 2.4e-08 63.2 176 36.4
Glyma.14G089039 Glycine max HOM05D002412 ORTHO05D002516 2.4e-08 63.2 173 35.3
BraA01t00437Z Brassica rapa HOM05D002412 ORTHO05D002516 3.1e-08 62.8 165 33.3
COL.COLO4_28483 Corchorus olitorius HOM05D002412 ORTHO05D002516 3.1e-08 62.8 136 39.7
Glyma.04G046600 Glycine max HOM05D002412 ORTHO05D002516 3.1e-08 62.8 176 34.7
Psat6g214680 Pisum sativum HOM05D002412 ORTHO05D002516 4.1e-08 62.4 173 34.7
THA.LOC104807210 Tarenaya hassleriana HOM05D002412 ORTHO05D002516 4.1e-08 62.4 180 31.1
Sed0010289 Sechium edule HOM05D002412 ORTHO05D002516 5.3e-08 62.0 167 34.7
Sed0020406 Sechium edule HOM05D002412 ORTHO05D002516 5.3e-08 62.0 161 35.4
Lalb_Chr02g0144931 Lupinus albus HOM05D002412 ORTHO05D002516 7.0e-08 61.6 178 34.3
Sopen01g049190 Solanum pennellii HOM05D002412 ORTHO05D002516 7.0e-08 61.6 166 34.3
unitig_744.g24125 Utricularia gibba HOM05D002412 ORTHO05D002516 7.0e-08 61.6 156 38.5
A01p04520 Brassica napus HOM05D002412 ORTHO05D002516 9.1e-08 61.2 165 32.1
Sabra09G0066300 Salix brachista HOM05D002412 ORTHO05D002516 1.2e-07 60.8 188 33.0
GSVIVG01009322001 Vitis vinifera HOM05D002412 ORTHO05D002516 1.2e-07 60.8 119 44.5
Medtr1g106080 Medicago truncatula HOM05D002412 ORTHO05D002516 1.6e-07 60.5 184 38.0
TWI56G0446 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 2.0e-07 60.1 165 37.6
Lj5g0012685 Lotus japonicus HOM05D002412 ORTHO05D002516 2.6e-07 59.7 183 32.8
Rhsim05G0091500 Rhododendron simsii HOM05D002412 ORTHO05D002516 3.5e-07 59.3 164 34.8
Rhsim05G0092300 Rhododendron simsii HOM05D002412 ORTHO05D002516 3.5e-07 59.3 167 32.3
Atru.chr13.848 Acer truncatum HOM05D002412 ORTHO05D002516 4.5e-07 58.9 137 39.4
Sabra16G0182100 Salix brachista HOM05D002412 ORTHO05D002516 4.5e-07 58.9 192 34.4
SGA_v2.0_scaffold225G43055 Striga asiatica HOM05D002412 ORTHO05D002516 4.5e-07 58.9 66 54.5
MSTRG.24380 Avicennia marina HOM05D002412 ORTHO05D002516 5.9e-07 58.5 167 35.9
VMungo0720G0862 Vigna mungo HOM05D002412 ORTHO05D002516 5.9e-07 58.5 185 34.6
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 1.0e-06 57.8 155 34.8
CSS0009753 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 1.0e-06 57.8 70 50.0
CSS0003834 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 1.3e-06 57.4 180 34.4
vmacro01953 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 1.3e-06 57.4 155 35.5
Lalb_Chr21g0308011 Lupinus albus HOM05D002412 ORTHO05D002516 1.7e-06 57.0 182 34.6
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 2.2e-06 56.6 157 31.8
FAN15G1065 Fragaria x ananassa HOM05D002412 ORTHO05D002516 2.2e-06 56.6 212 32.1
Nitab4.5_0001458g0070 Nicotiana tabacum HOM05D002412 ORTHO05D002516 2.2e-06 56.6 173 31.2
Solyc01g106910.4 Solanum lycopersicum HOM05D002412 ORTHO05D002516 2.2e-06 56.6 167 32.9
Medtr1g017890 Medicago truncatula HOM05D002412 ORTHO05D002516 2.9e-06 56.2 114 35.1
TWI12G0423 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 2.9e-06 56.2 179 34.6
TWI59G0380 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 2.9e-06 56.2 195 31.8
Ah.01g007050 Amaranthus hybridus HOM05D002412 ORTHO05D002516 3.8e-06 55.8 190 32.6
AL7G17660 Arabidopsis lyrata HOM05D002412 ORTHO05D002516 3.8e-06 55.8 166 33.1
MSTRG.1024 Avicennia marina HOM05D002412 ORTHO05D002516 3.8e-06 55.8 144 37.5
CAN.G606.66 Capsicum annuum HOM05D002412 ORTHO05D002516 3.8e-06 55.8 163 32.5
ECA236G2487 Erigeron canadensis HOM05D002412 ORTHO05D002516 3.8e-06 55.8 169 31.4
Eucgr.I01046 Eucalyptus grandis HOM05D002412 ORTHO05D002516 3.8e-06 55.8 192 32.3
SalBow6G4199 Salvia bowleyana HOM05D002412 ORTHO05D002516 3.8e-06 55.8 175 32.6
CiPaw.07G173700 Carya illinoinensis HOM05D002412 ORTHO05D002516 5.0e-06 55.5 184 32.6
Dinv15818 Davidia involucrata HOM05D002412 ORTHO05D002516 5.0e-06 55.5 134 33.6
Ca_24361_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 6.5e-06 55.1 122 36.9
Ca_11030_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 8.5e-06 54.7 178 34.8
TPR.G33675 Trifolium pratense HOM05D002412 ORTHO05D002516 8.5e-06 54.7 173 32.9


User provided reference genes

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