Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 0.0e+00 1535.4 825 100.0
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1155.2 834 74.2
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1147.5 808 77.0
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1145.2 834 73.7
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1142.1 845 73.3
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1141.3 833 74.1
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1141.3 845 73.0
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1137.9 834 73.5
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1135.6 834 72.1
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1128.6 828 71.9
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1126.7 798 74.8
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1126.3 837 72.6
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1120.5 843 71.5
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 0.0e+00 1120.5 839 72.9
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1120.1 831 70.8
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 0.0e+00 1119.4 835 72.7
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1118.2 830 71.4
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1116.7 830 73.6
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1115.1 820 71.7
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1113.6 824 71.6
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1112.4 828 72.3
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1111.7 828 71.4
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 0.0e+00 1107.0 838 72.6
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1107.0 825 73.1
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1105.9 818 72.6
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1104.7 829 70.8
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1104.7 828 72.3
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1104.4 841 71.3
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 0.0e+00 1104.4 890 68.7
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1100.9 831 70.2
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1099.7 832 71.6
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1097.8 832 71.6
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1097.8 826 70.1
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1097.4 832 71.5
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1096.3 855 69.0
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1095.9 790 73.5
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 0.0e+00 1093.2 836 69.7
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1090.9 864 68.5
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1090.1 822 70.0
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1090.1 822 70.0
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1089.7 817 71.1
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1088.2 824 70.0
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1087.8 827 70.1
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1086.2 824 69.9
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1085.9 830 71.4
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1084.3 829 70.7
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1083.9 844 71.0
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1083.6 829 70.2
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1082.0 833 69.4
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1081.2 844 71.0
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1080.9 824 69.7
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 0.0e+00 1080.5 813 71.1
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 5.6e-312 1073.9 845 70.1
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 2.3e-311 1072.0 838 68.5
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 2.8e-311 1071.6 838 70.2
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 2.5e-310 1068.5 841 69.1
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 9.5e-310 1066.6 819 70.8
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 3.6e-309 1064.7 836 69.0
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 6.2e-309 1063.9 816 68.3
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 1.1e-308 1063.1 826 69.4
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 1.4e-308 1062.8 831 68.5
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 1.8e-308 1062.4 834 68.6
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 5.8e-307 1057.4 833 68.8
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 9.8e-307 1056.6 832 67.9
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 2.2e-306 1055.4 810 69.3
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 4.9e-306 1054.3 789 70.7
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 1.1e-305 1053.1 939 63.0
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 1.2e-304 1049.7 828 69.9
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 2.7e-304 1048.5 904 64.7
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 4.6e-304 1047.7 869 67.2
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 7.8e-304 1047.0 820 69.6
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 1.0e-303 1046.6 826 68.5
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 9.5e-302 1040.0 831 69.7
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 2.1e-301 1038.9 830 68.4
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 5.8e-299 1030.8 819 67.6
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 9.9e-299 1030.0 818 67.8
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 1.3e-298 1029.6 834 67.3
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 1.7e-298 1029.2 841 68.1
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 2.2e-298 1028.9 819 67.6
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 4.9e-298 1027.7 842 65.9
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 4.1e-297 1024.6 818 67.5
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 5.1e-295 1017.7 828 66.3
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 1.2e-293 1013.1 827 68.0
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 2.8e-293 1011.9 808 67.2
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 2.4e-292 1008.8 828 65.6
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 5.2e-292 1007.7 826 66.0
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 3.4e-291 1005.0 808 66.8
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 3.4e-291 1005.0 808 66.8
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 7.1e-289 997.3 826 65.1
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 9.3e-289 996.9 828 64.9
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 3.9e-287 991.5 650 76.9
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 8.1e-285 983.8 825 65.8
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 1.1e-284 983.4 650 76.5
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 1.2e-283 979.9 758 68.5
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 1.2e-283 979.9 788 70.3
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 1.2e-283 979.9 821 62.5
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 2.9e-282 975.3 731 69.6
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 1.6e-280 969.5 640 79.1
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 2.1e-280 969.1 823 65.9
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 3.4e-275 951.8 927 60.6
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 4.5e-275 951.4 668 72.0
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 3.8e-274 948.3 821 62.6
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 5.6e-270 934.5 817 62.9
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 8.1e-269 930.6 666 71.0
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 1.2e-267 926.8 828 61.2
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 4.9e-266 921.4 569 81.7
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 3.7e-261 905.2 794 59.4
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 4.1e-260 901.7 623 73.2
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 3.0e-247 859.0 805 56.1
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 9.7e-246 854.0 789 56.5
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 7.7e-235 817.8 809 52.9
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.4e-228 797.0 841 58.1
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 1.8e-220 770.0 798 51.1
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 2.0e-219 766.5 786 59.0
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 2.4e-196 689.9 428 80.8
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 2.7e-163 580.1 476 67.6
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.3e-154 551.2 444 68.0
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 4.1e-127 459.9 319 74.6
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 5.0e-125 453.0 784 36.4
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 7.9e-123 445.7 268 82.8
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 1.8e-122 444.5 302 72.8
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 1.6e-115 421.4 792 33.6
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 3.1e-111 407.1 377 60.5
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 4.0e-98 363.6 881 30.3
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 1.0e-93 349.0 374 59.1
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.4e-74 285.4 279 59.9
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 2.4e-71 274.6 140 99.3
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 9.5e-68 262.7 393 47.1
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 8.1e-51 206.5 255 49.0
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 1.7e-48 198.7 126 80.2
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 2.8e-43 181.4 132 70.5
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 4.0e-42 177.6 142 68.3
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 4.8e-35 154.1 150 55.3
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.1e-34 152.9 150 55.3
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 1.5e-33 149.1 121 67.8
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.5e-31 141.7 160 53.1
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 3.9e-13 81.3 62 67.7
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 1.4e-10 72.8 77 53.2


User provided reference genes

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