Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 2.9e-199 698.4 347 100.0
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 5.3e-129 464.9 349 63.6
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 5.9e-128 461.5 349 62.5
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 2.9e-127 459.1 348 63.5
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 3.2e-126 455.7 349 63.9
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 3.0e-124 449.1 349 61.9
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 2.6e-123 446.0 350 60.6
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 5.7e-123 444.9 348 62.4
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 1.7e-122 443.4 350 62.3
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 3.7e-122 442.2 311 67.8
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.1e-121 440.7 348 62.4
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 1.8e-121 439.9 349 62.2
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 2.4e-121 439.5 347 62.8
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 4.1e-121 438.7 349 61.6
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 5.3e-121 438.3 310 66.8
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 1.2e-120 437.2 350 59.1
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 1.2e-120 437.2 348 61.8
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 1.2e-120 437.2 335 63.6
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 2.0e-120 436.4 348 62.4
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 2.6e-120 436.0 348 61.5
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 5.9e-120 434.9 332 63.3
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 1.0e-119 434.1 347 62.0
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 8.5e-119 431.0 347 60.8
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 8.5e-119 431.0 349 60.5
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 1.1e-118 430.6 349 61.0
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 1.5e-118 430.3 349 59.3
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 3.2e-118 429.1 349 60.2
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 3.2e-118 429.1 349 60.2
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 5.5e-118 428.3 352 59.4
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 5.5e-118 428.3 349 59.3
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 7.2e-118 427.9 347 59.7
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 9.4e-118 427.6 350 61.1
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.2e-117 427.2 349 59.6
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.6e-117 426.8 349 59.3
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 2.1e-117 426.4 330 61.5
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 4.7e-117 425.2 349 58.5
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 4.7e-117 425.2 347 60.8
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 4.7e-117 425.2 333 62.5
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 1.8e-116 423.3 324 63.6
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 5.2e-116 421.8 341 60.4
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 5.2e-116 421.8 344 59.6
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 6.8e-116 421.4 327 61.2
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 2.6e-115 419.5 339 60.8
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 2.6e-115 419.5 346 56.4
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 4.4e-115 418.7 347 58.8
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 7.5e-115 417.9 293 67.2
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 2.8e-114 416.0 349 57.3
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 8.3e-114 414.5 355 56.1
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 8.3e-114 414.5 349 55.3
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 1.1e-113 414.1 339 60.2
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.4e-113 413.7 331 58.6
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 1.4e-113 413.7 354 57.9
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 2.4e-113 412.9 349 58.5
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 4.1e-113 412.1 350 58.3
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 5.3e-113 411.8 347 57.6
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 9.1e-113 411.0 353 56.7
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 9.1e-113 411.0 324 60.2
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 4.5e-112 408.7 343 57.4
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 5.9e-112 408.3 296 62.2
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 1.0e-111 407.5 348 55.5
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 1.7e-111 406.8 285 68.1
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 1.7e-111 406.8 347 57.3
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 1.5e-110 403.7 295 62.0
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 5.5e-110 401.7 343 57.1
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 7.2e-110 401.4 349 55.9
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 2.1e-109 399.8 292 63.4
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 3.6e-109 399.1 340 55.9
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 4.7e-109 398.7 322 57.1
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 1.8e-108 396.7 304 59.9
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 2.3e-108 396.4 366 54.1
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 2.3e-108 396.4 348 56.3
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 1.5e-107 393.7 366 53.0
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 5.7e-107 391.7 329 58.1
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 2.2e-106 389.8 294 61.9
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 5.4e-105 385.2 348 55.7
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 1.2e-104 384.0 349 56.2
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 1.0e-103 380.9 347 55.6
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 6.6e-103 378.3 350 52.9
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 4.2e-102 375.6 288 61.1
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 4.2e-102 375.6 328 57.6
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 4.2e-102 375.6 289 60.2
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 5.5e-102 375.2 342 55.3
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 1.2e-101 374.0 351 55.3
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 6.1e-101 371.7 346 55.5
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 8.0e-101 371.3 346 55.5
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 1.0e-100 370.9 347 55.3
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 1.8e-100 370.2 348 55.7
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 1.8e-100 370.2 347 55.6
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 1.8e-100 370.2 347 55.6
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 1.2e-99 367.5 355 53.0
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 1.5e-99 367.1 353 51.8
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 3.4e-99 365.9 301 56.8
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 4.4e-99 365.5 348 54.6
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 4.9e-98 362.1 335 54.9
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 5.9e-96 355.1 286 57.3
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 8.6e-95 351.3 352 51.7
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 1.2e-91 340.9 294 56.8
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 3.4e-91 339.3 353 49.3
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 7.5e-91 338.2 325 51.7
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 1.7e-90 337.0 304 54.9
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 5.4e-89 332.0 353 48.7
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 3.0e-87 326.2 338 50.0
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 4.0e-84 315.8 312 48.1
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 2.8e-77 293.1 269 53.9
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 4.0e-76 289.3 220 62.3
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 2.6e-75 286.6 284 48.2
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 1.3e-74 284.3 287 48.4
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 6.6e-71 271.9 296 47.6
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 1.1e-70 271.2 346 42.5
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 7.3e-70 268.5 331 42.0
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 6.0e-64 248.8 298 40.3
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 1.3e-63 247.7 308 45.1
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 3.0e-63 246.5 359 38.2
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 8.7e-63 245.0 190 59.5
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 8.4e-50 201.8 152 63.8
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.6e-48 196.1 305 37.0
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 8.7e-47 191.8 291 35.4
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.5e-46 190.3 286 36.0
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.0e-44 183.0 315 35.6
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-43 181.0 327 34.6
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.0e-43 180.6 304 34.5
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 1.7e-42 177.6 283 34.6
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-41 174.9 294 34.7
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.5e-41 173.7 303 34.0
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.1e-40 170.6 311 33.1
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.8e-39 167.5 248 38.7
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.5e-38 163.7 309 31.7
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.7e-37 159.8 290 31.0
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-36 158.3 292 33.2
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.8e-36 157.5 236 37.7
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 2.6e-35 153.7 284 31.0
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-33 147.9 291 31.3
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.4e-33 147.9 300 31.3
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.2e-33 146.7 291 30.9
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 4.6e-32 142.9 320 30.6
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.9e-31 139.8 291 30.2
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.2e-24 118.2 292 28.8
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 1.3e-18 98.2 275 28.7
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 2.4e-12 77.4 94 43.6
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 4.1e-12 76.6 77 45.5
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 4.5e-11 73.2 111 36.0
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 6.5e-10 69.3 157 32.5
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 3.2e-09 67.0 40 60.0


User provided reference genes

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