Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 1.3e-130 469.9 279 100.0
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 1.7e-29 134.0 302 44.0
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 1.5e-25 120.9 332 39.5
Dinv23691 Davidia involucrata HOM05D009304 ORTHO05D003109 1.1e-23 114.8 280 41.8
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 4.3e-20 102.8 267 38.6
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 7.3e-20 102.1 252 41.7
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 7.3e-20 102.1 252 41.7
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 2.1e-19 100.5 256 41.8
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 2.8e-19 100.1 268 38.8
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 1.1e-18 98.2 246 41.9
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 1.1e-18 98.2 255 40.4
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 1.1e-18 98.2 255 40.4
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 1.4e-18 97.8 302 37.7
Nitab4.5_0002370g0010 Nicotiana tabacum HOM05D009304 ORTHO05D003109 3.1e-18 96.7 270 40.4
Hma1.2p1_0875F.1_g231510 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 5.2e-18 95.9 242 40.1
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 1.2e-17 94.7 297 37.0
Eucgr.A01789 Eucalyptus grandis HOM05D004441 ORTHO05D003109 1.5e-17 94.4 320 33.1
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 9.9e-17 91.7 238 39.1
Dinv01395 Davidia involucrata HOM05D009304 ORTHO05D003109 1.3e-16 91.3 251 39.8
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 2.9e-16 90.1 278 36.0
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 3.7e-16 89.7 294 35.7
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 3.7e-16 89.7 294 35.7
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 4.9e-16 89.4 243 38.3
FvH4_6g44980 Fragaria vesca HOM05D010652 ORTHO05D003109 1.4e-15 87.8 271 35.1
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 2.4e-15 87.0 241 37.8
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 3.2e-15 86.7 311 36.0
Actinidia09882 Actinidia chinensis HOM05D009304 ORTHO05D003109 4.1e-15 86.3 243 41.2
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 4.1e-15 86.3 297 33.7
ClCG02G001220 Citrullus lanatus HOM05D032711 ORTHO05D003109 7.1e-15 85.5 255 36.5
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 7.1e-15 85.5 243 37.9
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 1.6e-14 84.3 302 33.1
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 1.6e-14 84.3 283 34.3
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 1.6e-14 84.3 311 35.7
Oeu025512.1 Olea europaea HOM05D009304 ORTHO05D003109 2.1e-14 84.0 246 37.0
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 3.5e-14 83.2 252 41.3
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 7.8e-14 82.0 300 34.0
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 1.3e-13 81.3 313 33.9
Rhsim04G0066200 Rhododendron simsii HOM05D009304 ORTHO05D003109 1.3e-13 81.3 204 40.2
Sopen07g028460 Solanum pennellii HOM05D009304 ORTHO05D003109 2.3e-13 80.5 311 34.1
Psat7g199680 Pisum sativum HOM05D010177 ORTHO05D003109 3.0e-13 80.1 275 32.0
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 3.9e-13 79.7 310 34.2
FAN14G1127 Fragaria x ananassa HOM05D010652 ORTHO05D003109 6.6e-13 79.0 271 33.6
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 6.6e-13 79.0 296 33.8
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 1.1e-12 78.2 292 34.9
Sed0017971 Sechium edule HOM05D002331 ORTHO05D002624 1.1e-12 78.2 251 36.7
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 1.5e-12 77.8 301 33.9
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 1.5e-12 77.8 265 34.7
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 1.9e-12 77.4 323 35.6
FAN09G1981 Fragaria x ananassa HOM05D010652 ORTHO05D003109 3.3e-12 76.6 271 33.6
VMungo1080G0072 Vigna mungo HOM05D010177 ORTHO05D003109 3.3e-12 76.6 283 34.3
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 4.3e-12 76.3 283 36.7
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 5.6e-12 75.9 307 34.2
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 5.6e-12 75.9 263 36.5
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 7.3e-12 75.5 215 36.3
CANSAT64G2194 Cannabis sativa HOM05D010652 ORTHO05D003109 7.3e-12 75.5 264 35.2
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 9.5e-12 75.1 334 33.8
Cfa014564 Carpinus fangiana HOM05D010652 ORTHO05D003109 1.6e-11 74.3 296 32.1
Migut.M01162 Erythranthe guttata HOM05D004441 ORTHO05D003109 1.6e-11 74.3 309 36.6
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 2.1e-11 73.9 301 31.9
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 2.1e-11 73.9 289 32.9
Ca_20682_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 2.8e-11 73.6 258 35.7
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 3.6e-11 73.2 290 33.4
CsaV3_7G004220 Cucumis sativus L. HOM05D032711 ORTHO05D003109 4.7e-11 72.8 255 35.3
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 8.1e-11 72.0 305 33.4
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.1e-10 71.6 305 33.4
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 1.1e-10 71.6 256 36.7
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 1.1e-10 71.6 333 33.0
DCAR_012992 Daucus carota HOM05D009304 ORTHO05D003109 1.4e-10 71.2 240 34.6
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.4e-10 71.2 305 33.4
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 1.8e-10 70.9 237 34.2
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 2.4e-10 70.5 306 33.7
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 2.4e-10 70.5 305 33.4
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 5.2e-10 69.3 262 34.7
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 5.2e-10 69.3 270 33.0
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 8.9e-10 68.6 284 34.2
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 8.9e-10 68.6 289 36.7
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 8.9e-10 68.6 253 35.6
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 8.9e-10 68.6 206 38.3
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 2.0e-09 67.4 308 30.8
Glyma.13G299800 Glycine max HOM05D010177 ORTHO05D003109 3.4e-09 66.6 283 32.9
Hma1.2p1_0280F.1_g112760 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 3.4e-09 66.6 183 40.4
BcaC09g49327 Brassica carinata HOM05D004441 ORTHO05D003109 5.8e-09 65.9 254 33.9
C01p37890 Brassica napus HOM05D004441 ORTHO05D003109 5.8e-09 65.9 254 33.9
BolC1t03749H Brassica oleracea HOM05D004441 ORTHO05D003109 5.8e-09 65.9 254 33.9
ECA234G0694 Erigeron canadensis HOM05D009304 ORTHO05D003109 5.8e-09 65.9 217 35.9
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 5.8e-09 65.9 337 29.1
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 5.8e-09 65.9 258 34.1
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 9.9e-09 65.1 307 33.9
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 1.3e-08 64.7 262 37.4
BraA01t03127Z Brassica rapa HOM05D004441 ORTHO05D003109 1.3e-08 64.7 253 33.6
Sabra05G0071200 Salix brachista HOM05D010652 ORTHO05D003109 1.3e-08 64.7 297 32.0
Lsat_1_v5_gn_7_20000 Lactuca sativa HOM05D004441 ORTHO05D003109 2.2e-08 63.9 254 36.2
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 2.2e-08 63.9 268 34.3
Solyc08g068460.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 2.2e-08 63.9 260 33.5
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 2.9e-08 63.5 244 36.5
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 2.9e-08 63.5 197 37.6
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 3.8e-08 63.2 257 32.7
PGR142G1157 Punica granatum HOM05D010652 ORTHO05D003109 3.8e-08 63.2 268 32.5
Lalb_Chr22g0356441 Lupinus albus HOM05D010177 ORTHO05D003109 4.9e-08 62.8 244 34.0
Thhalv10023654m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 6.4e-08 62.4 194 35.6
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 6.4e-08 62.4 162 38.9
arahy.Tifrunner.gnm1.ann1.48X98F Arachis hypogaea HOM05D010177 ORTHO05D003109 8.4e-08 62.0 242 32.6
CsaV3_6G049880 Cucumis sativus L. HOM05D004441 ORTHO05D003109 8.4e-08 62.0 251 33.1
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 8.4e-08 62.0 269 34.2
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 8.4e-08 62.0 284 32.7
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.1e-07 61.6 259 33.6
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.1e-07 61.6 259 33.6
Lsat_1_v5_gn_8_132261 Lactuca sativa HOM05D009304 ORTHO05D003109 1.1e-07 61.6 274 32.8
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 1.1e-07 61.6 290 31.0
A01p29970 Brassica napus HOM05D004441 ORTHO05D003109 1.4e-07 61.2 254 32.7
BcaB04g20321 Brassica carinata HOM05D004441 ORTHO05D003109 1.9e-07 60.8 247 32.0
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 1.9e-07 60.8 347 29.7
Sed0005410 Sechium edule HOM05D002331 ORTHO05D002624 1.9e-07 60.8 258 32.6
Lalb_Chr18g0059831 Lupinus albus HOM05D004441 ORTHO05D003109 2.4e-07 60.5 205 33.2
Potri.005G086300 Populus trichocarpa HOM05D010652 ORTHO05D003109 2.4e-07 60.5 253 34.4
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 3.2e-07 60.1 254 32.7
CAN.G996.13 Capsicum annuum HOM05D009304 ORTHO05D003109 3.2e-07 60.1 219 33.8
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 3.2e-07 60.1 252 31.7
Medtr4g089190 Medicago truncatula HOM05D004441 ORTHO05D003109 3.2e-07 60.1 300 28.7
Phvul.005G106600 Phaseolus vulgaris HOM05D010177 ORTHO05D003109 3.2e-07 60.1 283 31.1
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 4.1e-07 59.7 247 32.8
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 5.4e-07 59.3 273 37.0
BcaC02g10584 Brassica carinata HOM05D004441 ORTHO05D003109 7.1e-07 58.9 246 34.1
C04p27200 Brassica napus HOM05D004441 ORTHO05D003109 7.1e-07 58.9 246 34.1
BolC4t24251H Brassica oleracea HOM05D004441 ORTHO05D003109 7.1e-07 58.9 246 34.1
Potri.007G078350 Populus trichocarpa HOM05D010652 ORTHO05D003109 7.1e-07 58.9 195 35.4
Glyma.12G108500 Glycine max HOM05D010177 ORTHO05D003109 9.2e-07 58.5 313 34.2
Lj3g0011122 Lotus japonicus HOM05D010177 ORTHO05D003109 9.2e-07 58.5 276 31.5
Peaxi162Scf00612g00043 Petunia axillaris HOM05D004441 ORTHO05D003109 9.2e-07 58.5 147 37.4
Sp2g03290 Schrenkiella parvula HOM05D004441 ORTHO05D003109 9.2e-07 58.5 252 31.3
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 1.2e-06 58.2 315 31.1
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.2e-06 58.2 278 32.0
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 1.2e-06 58.2 307 32.2
AL2G15180 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 1.6e-06 57.8 254 32.7
A03p66730 Brassica napus HOM05D004441 ORTHO05D003109 2.1e-06 57.4 252 33.7
BraA01t02809Z Brassica rapa HOM05D004441 ORTHO05D003109 2.1e-06 57.4 252 33.7
Carub.0002s0400 Capsella rubella HOM05D004441 ORTHO05D003109 2.1e-06 57.4 253 33.2
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 2.1e-06 57.4 257 32.3
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 2.1e-06 57.4 263 33.1
Glyma.U031310 Glycine max HOM05D010177 ORTHO05D003109 3.5e-06 56.6 316 37.7
Nn1g03959 Nelumbo nucifera HOM05D004441 ORTHO05D003109 3.5e-06 56.6 111 40.5
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 4.6e-06 56.2 249 30.9
PGSC0003DMG400022372 Solanum tuberosum HOM05D004441 ORTHO05D003109 4.6e-06 56.2 266 33.5
Hma1.2p1_0835F.1_g225850 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 6.0e-06 55.8 187 36.4
Hma1.2p1_0835F.1_g225855 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 6.0e-06 55.8 187 36.4
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 6.0e-06 55.8 247 32.0
VMungo0251G2507 Vigna mungo HOM05D004441 ORTHO05D003109 6.0e-06 55.8 289 29.8
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 7.8e-06 55.5 269 32.3


User provided reference genes

Program Settings