Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 7.2e-245 850.1 426 100.0
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 1.3e-140 503.8 395 61.5
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 2.8e-140 502.7 395 63.3
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 8.2e-140 501.1 396 62.6
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 1.8e-139 500.0 391 62.4
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.1e-139 499.2 395 63.3
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 4.1e-139 498.8 396 61.9
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 4.1e-139 498.8 397 62.0
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 1.6e-138 496.9 395 62.8
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 2.0e-138 496.5 367 65.9
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.6e-138 496.1 395 62.8
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 3.5e-138 495.7 454 55.7
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 7.7e-138 494.6 395 63.3
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 1.0e-137 494.2 396 62.9
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.3e-137 493.8 395 62.3
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 1.7e-137 493.4 419 60.4
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 3.8e-137 492.3 396 61.4
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 5.0e-137 491.9 395 60.3
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 6.5e-137 491.5 395 61.5
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 6.5e-137 491.5 396 63.1
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 1.5e-136 490.3 395 62.0
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.5e-136 490.3 395 62.0
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 2.5e-136 489.6 396 61.6
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 8.0e-135 484.6 392 61.2
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 2.3e-134 483.0 398 61.1
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 5.2e-134 481.9 391 61.6
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 6.7e-134 481.5 393 61.1
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.2e-133 480.7 395 62.5
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 3.3e-133 479.2 396 61.1
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 5.7e-133 478.4 395 59.2
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 5.7e-133 478.4 391 59.3
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 9.7e-133 477.6 396 61.4
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 2.8e-132 476.1 395 61.0
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 4.8e-132 475.3 397 58.7
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 6.3e-132 474.9 396 60.6
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 8.2e-132 474.6 395 60.8
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 3.1e-131 472.6 395 58.5
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 3.1e-131 472.6 398 59.8
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 5.3e-131 471.9 396 60.9
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 1.6e-130 470.3 396 60.4
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 2.0e-130 469.9 396 58.8
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 4.5e-130 468.8 395 58.0
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 7.7e-130 468.0 395 58.2
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 7.7e-130 468.0 374 62.3
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 1.3e-129 467.2 397 58.4
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 2.9e-129 466.1 403 59.3
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 2.9e-129 466.1 395 58.7
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 3.8e-129 465.7 396 59.8
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 5.0e-129 465.3 395 59.2
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 5.0e-129 465.3 391 59.6
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 2.5e-128 463.0 396 58.6
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 3.2e-128 462.6 396 59.8
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 3.6e-127 459.1 402 58.5
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 3.6e-127 459.1 390 58.7
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 4.7e-127 458.8 394 57.4
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 1.0e-126 457.6 408 56.4
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 5.2e-126 455.3 395 58.0
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 1.2e-125 454.1 397 57.2
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 4.4e-125 452.2 395 58.0
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 8.3e-124 448.0 396 57.1
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 1.4e-123 447.2 395 57.0
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 4.1e-123 445.7 396 58.1
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 5.4e-123 445.3 410 57.3
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 5.4e-123 445.3 395 57.2
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 1.6e-122 443.7 411 56.4
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 5.0e-121 438.7 396 55.1
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 8.6e-121 438.0 357 60.8
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 1.5e-120 437.2 397 57.7
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 2.8e-119 433.0 395 55.2
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 6.1e-119 431.8 410 55.1
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 1.4e-118 430.6 337 63.8
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 1.4e-118 430.6 394 56.3
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 5.7e-117 425.2 398 54.5
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 5.7e-117 425.2 362 59.4
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 3.7e-116 422.5 398 53.0
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 6.3e-116 421.8 328 65.2
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 1.2e-114 417.5 397 54.7
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 1.3e-113 414.1 398 53.0
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 6.6e-113 411.8 395 53.7
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 8.6e-113 411.4 400 52.2
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 1.5e-112 410.6 403 53.1
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 1.9e-112 410.2 399 51.9
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 5.6e-112 408.7 357 57.4
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 2.8e-111 406.4 396 54.3
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 1.0e-110 404.4 365 54.8
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 2.3e-110 403.3 352 58.2
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 6.8e-110 401.7 368 55.2
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 2.0e-106 390.2 378 55.3
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 6.0e-106 388.7 398 54.0
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 7.8e-106 388.3 357 55.7
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.3e-105 387.5 454 46.3
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 2.5e-104 383.3 401 51.6
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.6e-103 380.6 469 44.6
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.6e-103 379.4 304 62.8
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 6.2e-103 378.6 397 51.4
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 8.0e-103 378.3 359 54.3
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.4e-102 377.5 420 47.6
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 4.0e-102 375.9 397 52.6
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 1.2e-101 374.4 397 52.4
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 2.0e-101 373.6 397 52.4
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 2.6e-101 373.2 397 52.4
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 8.3e-100 368.2 367 54.8
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 7.3e-96 355.1 402 49.5
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 4.7e-95 352.4 397 48.9
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 6.2e-95 352.1 399 49.6
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 3.9e-89 332.8 265 60.8
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.9e-83 313.9 373 45.8
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 2.3e-81 307.0 456 40.1
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 5.6e-80 302.4 428 39.3
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 3.2e-75 286.6 215 66.5
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 2.8e-71 273.5 358 45.8
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.8e-70 270.8 308 47.7
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 5.4e-67 259.2 191 67.0
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.6e-66 256.1 193 65.8
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 4.9e-60 236.1 285 44.9
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 1.9e-59 234.2 312 41.7
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 1.3e-57 228.0 186 61.3
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 6.7e-49 199.1 233 47.6
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 1.4e-46 191.4 141 64.5
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 1.0e-44 185.3 400 32.5
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 2.4e-38 164.1 130 61.5
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 5.5e-35 152.9 307 31.3
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.3e-33 147.5 113 64.6
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 6.7e-33 146.0 109 59.6
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 1.1e-32 145.2 141 53.2
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 2.0e-32 144.4 318 32.1
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 9.7e-32 142.1 119 58.8
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.1e-30 138.7 132 54.5
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 2.7e-26 124.0 165 42.4
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 3.7e-23 113.6 71 74.6
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 9.1e-22 109.0 336 27.1
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 7.2e-19 99.4 121 46.3
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 1.2e-18 98.6 79 57.0
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.2e-10 72.0 50 64.0
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 3.6e-10 70.5 95 41.1
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 9.8e-08 62.4 80 43.8
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 1.3e-07 62.0 104 40.4
PRCOL_00002153 Prasinoderma coloniale HOM05D024116 ORTHO05D023526 9.1e-06 55.8 325 22.5
SMO348G0061 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 9.1e-06 55.8 158 31.0


User provided reference genes

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