Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 0.0e+00 1235.7 622 100.0
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 1.7e-271 939.1 604 78.1
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 6.1e-269 930.6 610 76.2
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 6.8e-268 927.2 632 74.4
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 8.9e-268 926.8 632 74.1
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 2.0e-267 925.6 607 75.5
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.7e-266 922.5 604 76.3
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 2.9e-266 921.8 590 77.6
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 5.4e-265 917.5 600 76.2
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 2.0e-264 915.6 608 75.2
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 3.5e-264 914.8 610 74.4
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 4.6e-264 914.4 602 75.7
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 1.3e-263 912.9 608 74.8
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 5.0e-263 911.0 614 74.1
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 6.6e-263 910.6 604 75.3
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 1.5e-262 909.4 607 74.3
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.9e-262 909.1 604 75.2
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 4.3e-262 907.9 612 73.0
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 4.3e-262 907.9 612 72.9
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 4.7e-261 904.4 608 73.8
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 1.0e-260 903.3 606 74.6
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 1.0e-260 903.3 611 74.1
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 2.3e-260 902.1 619 71.9
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 3.1e-260 901.7 604 74.0
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 5.2e-260 901.0 608 74.5
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 1.2e-259 899.8 604 74.8
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 1.5e-259 899.4 600 74.2
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 5.8e-259 897.5 617 73.6
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 1.7e-258 896.0 591 75.0
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 2.2e-258 895.6 606 74.4
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 3.7e-258 894.8 604 73.7
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 9.2e-257 890.2 605 73.7
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 9.2e-257 890.2 605 73.7
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 1.2e-256 889.8 610 72.5
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 7.8e-256 887.1 605 73.6
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 2.3e-255 885.6 616 71.6
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 5.0e-255 884.4 626 70.9
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 1.1e-254 883.2 616 71.9
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 5.6e-254 880.9 604 72.5
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 7.3e-254 880.6 608 72.9
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.2e-253 879.8 632 69.8
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.1e-253 879.0 632 69.6
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 2.8e-253 878.6 620 71.3
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 6.2e-253 877.5 620 71.5
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 8.1e-253 877.1 609 72.6
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 8.1e-253 877.1 597 73.5
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 8.1e-253 877.1 605 72.6
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 1.1e-252 876.7 609 73.9
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.8e-252 875.9 633 69.8
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 4.0e-252 874.8 607 72.3
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 4.0e-252 874.8 632 69.5
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 6.8e-252 874.0 604 72.7
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 6.8e-252 874.0 591 73.1
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 6.8e-252 874.0 617 72.4
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 1.2e-251 873.2 604 72.0
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 2.0e-251 872.5 611 71.8
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 3.4e-251 871.7 632 69.5
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 9.8e-251 870.2 611 71.7
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 2.2e-250 869.0 632 69.5
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 6.4e-250 867.5 614 72.6
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 1.4e-249 866.3 617 70.7
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 1.9e-249 865.9 602 73.1
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 4.1e-249 864.8 575 74.8
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 4.1e-249 864.8 599 72.5
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 4.1e-249 864.8 713 63.8
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 9.2e-249 863.6 619 70.6
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 1.6e-248 862.8 609 70.4
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 3.5e-248 861.7 602 72.4
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 1.7e-247 859.4 606 70.5
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 6.6e-247 857.4 607 71.2
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 6.6e-247 857.4 634 70.0
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 8.6e-247 857.1 607 71.7
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 1.9e-246 855.9 604 71.4
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 2.5e-246 855.5 613 70.0
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 2.5e-246 855.5 609 70.9
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 2.8e-245 852.0 633 69.8
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 6.2e-245 850.9 640 68.4
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 6.2e-245 850.9 639 68.5
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 8.1e-245 850.5 604 70.9
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 8.1e-245 850.5 616 70.0
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 8.1e-245 850.5 617 69.4
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 1.1e-244 850.1 582 72.2
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 1.1e-244 850.1 607 71.3
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 3.1e-244 848.6 582 72.7
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 3.1e-244 848.6 605 71.6
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 8.9e-244 847.0 640 68.1
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 8.9e-244 847.0 641 68.2
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 2.0e-243 845.9 608 70.1
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 5.8e-243 844.3 615 68.8
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 1.7e-242 842.8 608 70.2
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 2.2e-242 842.4 608 70.9
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 3.8e-242 841.6 550 76.7
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 4.9e-242 841.3 610 70.3
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 6.4e-242 840.9 609 70.4
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 4.1e-241 838.2 640 68.3
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 5.4e-241 837.8 558 75.1
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 7.1e-241 837.4 611 68.4
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 2.7e-240 835.5 607 70.0
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 6.0e-240 834.3 632 67.4
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.0e-239 833.6 608 68.1
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 2.3e-239 832.4 625 66.4
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 3.0e-239 832.0 615 68.1
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 1.5e-238 829.7 607 69.2
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 3.3e-238 828.6 611 67.8
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 4.3e-238 828.2 610 67.7
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 5.6e-238 827.8 611 68.1
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 1.6e-237 826.2 611 67.9
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 3.6e-237 825.1 603 68.7
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 4.7e-237 824.7 604 68.2
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 4.7e-237 824.7 604 68.2
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 1.1e-236 823.5 604 68.0
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 1.1e-236 823.5 611 67.6
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 1.4e-236 823.2 604 68.2
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 2.4e-236 822.4 632 66.8
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 3.1e-236 822.0 632 66.8
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 5.2e-236 821.2 604 67.9
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 6.9e-236 820.8 605 67.8
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 1.7e-234 816.2 635 67.4
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 1.9e-225 786.2 554 71.7
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 7.1e-225 784.3 641 64.6
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 5.1e-223 778.1 948 48.4
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 6.7e-223 777.7 530 74.3
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 1.7e-218 763.1 585 64.8
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 3.8e-218 761.9 864 50.0
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 3.5e-216 755.4 593 63.6
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 2.6e-195 686.0 601 60.6
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 4.5e-195 685.3 548 66.2
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 5.0e-194 681.8 601 58.2
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 3.1e-188 662.5 433 77.4
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.2e-184 650.6 604 57.6
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 3.0e-183 646.0 453 68.7
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 6.5e-178 628.2 596 52.7
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 8.6e-162 574.7 375 78.4
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 8.3e-149 531.6 488 60.7
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 1.2e-147 527.7 440 65.0
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 8.9e-143 511.5 601 45.9
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 4.9e-133 479.2 342 72.5
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.3e-130 471.1 470 58.3
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 2.4e-103 380.6 356 52.5
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 1.6e-91 341.3 459 41.0
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 2.1e-91 340.9 549 35.3
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 6.7e-90 335.9 188 87.8
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 1.1e-89 335.1 638 35.3
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 1.4e-87 328.2 215 70.7
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 5.5e-84 316.2 215 69.8
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 9.7e-73 278.9 218 66.1
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 8.5e-69 265.8 217 61.3
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 8.5e-69 265.8 217 61.3
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 3.6e-67 260.4 167 73.7
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 3.7e-64 250.4 169 71.0
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 5.0e-61 240.0 456 34.4
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 1.7e-53 214.9 438 32.0
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 7.5e-49 199.5 243 48.6
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 1.4e-42 178.7 108 83.3
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 3.7e-32 144.1 72 95.8
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 1.2e-30 139.0 110 60.9
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 3.1e-26 124.4 77 71.4
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 5.2e-26 123.6 73 74.0
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 1.9e-20 105.1 102 55.9
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 1.6e-14 85.5 42 85.7
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 7.8e-14 83.2 49 71.4
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 7.8e-14 83.2 49 71.4
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 1.1e-12 79.3 48 70.8
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 2.8e-11 74.7 43 74.4
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 9.2e-07 59.7 53 56.6


User provided reference genes

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