Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1906.0 974 100.0
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1419.4 993 72.5
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1410.6 1016 71.0
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1409.0 1017 69.9
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1403.7 1013 71.2
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1396.7 1003 71.2
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1390.2 993 70.8
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1389.4 995 70.1
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1389.0 1004 70.0
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1388.6 1014 70.5
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1387.5 1021 69.2
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1386.3 1007 69.9
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1382.9 1011 69.4
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1382.5 1010 69.4
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1382.1 1015 69.0
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1380.9 998 70.6
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1380.2 1011 69.2
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1379.8 1011 69.0
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1378.2 1014 69.3
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1377.8 993 70.5
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1374.4 1011 69.2
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1373.2 1011 70.0
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1371.7 992 70.1
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1370.1 1005 69.0
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1370.1 1028 67.5
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1370.1 1015 68.7
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1368.2 997 70.1
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1367.1 1036 67.5
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1365.1 1015 68.8
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1364.7 1022 67.9
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1363.2 1012 69.8
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1363.2 982 70.7
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1362.4 1036 67.2
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1360.9 1016 67.4
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1360.5 1029 67.5
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1359.7 1016 67.5
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1359.0 1009 67.9
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1358.2 1008 68.0
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1357.0 1016 67.4
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1357.0 999 68.9
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1355.9 987 70.8
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1355.5 1047 66.6
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1351.7 998 68.4
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1351.7 990 70.0
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1350.5 1007 67.8
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1348.2 1008 68.2
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1346.6 973 70.7
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1345.9 1013 67.0
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1345.5 1002 68.1
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1344.7 999 68.6
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1341.3 1007 67.4
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1338.6 1033 66.8
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1338.6 1032 67.2
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1337.0 1004 67.8
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1336.6 1027 67.1
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1335.9 1026 66.8
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1330.9 1007 67.1
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1328.2 1003 68.3
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1327.8 1010 67.6
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1327.4 1003 68.3
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1327.0 1003 68.3
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1327.0 987 69.0
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1326.6 1003 68.2
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1326.6 1003 68.2
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1323.5 1010 67.0
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1323.1 1003 67.7
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1322.8 1004 66.8
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1320.1 1008 67.2
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1318.5 1012 67.0
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1318.1 968 69.2
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1316.2 1010 67.5
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1315.1 1061 64.6
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1314.3 1000 66.6
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1310.4 1012 67.1
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1303.5 934 72.9
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1299.6 1079 62.6
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1298.1 1022 65.2
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1297.7 966 67.9
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1296.2 983 68.2
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1285.0 962 67.8
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1283.5 987 67.1
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1273.8 972 67.9
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1272.7 986 66.6
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1271.5 985 66.5
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1268.1 1017 64.0
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1267.7 1015 65.0
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1259.6 991 66.1
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1250.3 977 67.0
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1246.1 984 65.1
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1245.3 919 69.5
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1244.6 1016 63.4
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1243.4 984 64.8
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1242.3 1108 59.5
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1241.5 988 65.8
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1240.7 1016 62.8
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1233.8 1017 62.2
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1227.6 1025 63.0
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1227.6 944 67.7
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1226.8 1018 62.0
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1195.6 1010 61.4
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1187.2 989 63.5
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1178.3 1038 60.0
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1176.8 1049 59.2
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1169.5 1030 60.0
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1158.3 1008 61.1
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1151.0 976 60.5
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1150.2 865 68.6
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1147.5 1035 57.8
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1138.6 915 64.3
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1137.9 1141 53.4
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1135.2 1001 59.7
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1125.2 1012 57.9
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1118.6 1171 51.8
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1115.1 966 62.2
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1112.8 884 66.6
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1102.4 1012 57.8
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 6.6e-310 1067.4 1017 56.6
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 4.7e-308 1061.2 922 59.4
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 9.9e-298 1026.9 858 61.9
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 4.9e-289 998.0 920 58.4
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 1.6e-284 983.0 811 62.6
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 1.7e-265 919.8 1023 49.2
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 3.8e-265 918.7 863 58.2
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.5e-258 896.7 1038 48.7
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.3e-257 893.6 773 62.6
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 5.5e-240 835.1 952 48.5
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 1.5e-237 827.0 628 68.5
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 4.7e-223 778.9 623 65.8
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.4e-222 777.3 1007 45.1
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 3.0e-222 776.2 1001 44.7
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 8.3e-220 768.1 609 65.0
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 5.9e-210 735.3 854 44.7
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 7.7e-210 734.9 639 60.1
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 4.4e-205 719.2 1221 39.1
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 3.5e-170 603.2 385 75.6
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 1.9e-168 597.4 360 80.6
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 5.5e-147 526.2 390 68.7
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 4.8e-143 513.1 555 51.0
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 2.2e-135 487.6 369 68.6
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 6.9e-134 482.6 401 64.1
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 7.4e-128 462.6 529 49.3
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 7.5e-96 356.3 254 70.5
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 3.5e-93 347.4 205 78.0
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 3.5e-93 347.4 276 64.9
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 1.9e-91 341.7 237 72.2
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 1.4e-78 298.9 238 63.0
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 6.8e-73 280.0 216 67.6
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 3.7e-71 274.2 150 86.0
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 4.9e-71 273.9 162 77.2
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 2.7e-69 268.1 742 30.5
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 6.8e-57 226.9 173 60.7
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 7.1e-46 190.3 971 25.2
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 3.0e-44 184.9 204 52.0
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 5.1e-44 184.1 237 48.5
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 7.4e-43 180.3 114 67.5
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 4.5e-40 171.0 147 65.3
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 4.2e-38 164.5 135 58.5
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.1e-37 162.2 90 78.9
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 6.7e-36 157.1 176 50.6
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 2.1e-29 135.6 84 78.6
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.5e-27 129.4 79 74.7
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 5.7e-27 127.5 77 75.3
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 2.5e-22 112.1 129 48.1
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 3.6e-21 108.2 105 55.2
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 3.0e-20 105.1 85 62.4
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 3.0e-20 105.1 96 56.2
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 1.7e-15 89.4 83 55.4
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 1.7e-15 89.4 83 55.4
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 1.7e-15 89.4 83 55.4
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 1.4e-14 86.3 86 60.5
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 2.5e-14 85.5 64 57.8
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 5.7e-11 74.3 46 73.9
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 3.1e-09 68.6 44 70.5
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 2.0e-08 65.9 117 36.8
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 2.9e-07 62.0 64 46.9


User provided reference genes

Program Settings