Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 3.9e-55 218.0 118 100.0
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 3.9e-55 218.0 118 100.0
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 1.4e-28 129.8 115 63.5
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 6.9e-28 127.5 115 60.9
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 1.2e-27 126.7 114 64.0
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 1.5e-27 126.3 116 61.2
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 2.0e-27 125.9 115 60.0
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 2.0e-27 125.9 115 60.9
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 4.4e-27 124.8 115 54.8
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 7.6e-27 124.0 115 60.9
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 1.3e-26 123.2 116 56.9
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 4.9e-26 121.3 118 56.8
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 6.4e-26 120.9 115 57.4
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 8.4e-26 120.6 115 57.4
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 1.4e-25 119.8 115 59.1
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 1.4e-25 119.8 114 58.8
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 1.9e-25 119.4 115 58.3
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 1.9e-25 119.4 115 58.3
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 2.4e-25 119.0 115 55.7
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 2.4e-25 119.0 115 59.1
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 4.2e-25 118.2 115 54.8
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 5.4e-25 117.9 115 59.1
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 5.4e-25 117.9 115 59.1
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 7.1e-25 117.5 115 56.5
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 9.3e-25 117.1 115 57.4
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 9.3e-25 117.1 115 56.5
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 1.2e-24 116.7 115 57.4
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 1.6e-24 116.3 115 55.7
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 1.6e-24 116.3 115 55.7
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.6e-24 116.3 115 53.9
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 2.1e-24 115.9 115 53.9
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 2.7e-24 115.5 115 53.9
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 4.6e-24 114.8 115 53.9
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 4.6e-24 114.8 118 54.2
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 6.0e-24 114.4 116 54.3
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 7.8e-24 114.0 115 54.8
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 7.8e-24 114.0 115 53.0
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 1.0e-23 113.6 115 55.7
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 1.3e-23 113.2 115 57.4
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.7e-23 112.8 115 53.9
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 1.7e-23 112.8 115 57.4
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 2.3e-23 112.5 118 52.5
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 2.3e-23 112.5 116 56.9
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 2.3e-23 112.5 109 56.0
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 2.3e-23 112.5 101 64.4
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 3.0e-23 112.1 115 53.9
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 3.0e-23 112.1 116 51.7
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 3.9e-23 111.7 106 56.6
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 3.9e-23 111.7 116 55.2
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 5.1e-23 111.3 115 53.0
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 6.6e-23 110.9 115 52.2
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 8.7e-23 110.5 115 56.5
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 8.7e-23 110.5 118 53.4
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 8.7e-23 110.5 120 50.8
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 1.1e-22 110.2 115 54.8
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 1.1e-22 110.2 115 53.0
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 1.1e-22 110.2 115 56.5
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 1.5e-22 109.8 115 51.3
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 2.5e-22 109.0 118 49.2
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 3.3e-22 108.6 115 51.3
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 3.3e-22 108.6 116 53.4
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 3.3e-22 108.6 115 52.2
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 3.3e-22 108.6 115 53.9
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 5.6e-22 107.8 118 54.2
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 5.6e-22 107.8 118 52.5
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 9.6e-22 107.1 115 52.2
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 1.3e-21 106.7 117 54.7
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 2.1e-21 105.9 124 50.8
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 2.8e-21 105.5 104 55.8
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 3.6e-21 105.1 117 50.4
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 6.2e-21 104.4 113 52.2
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 6.2e-21 104.4 110 54.5
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 6.2e-21 104.4 113 53.1
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 8.1e-21 104.0 115 53.9
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 8.1e-21 104.0 114 50.9
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 1.1e-20 103.6 115 50.4
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 1.1e-20 103.6 115 52.2
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 1.4e-20 103.2 113 53.1
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 1.8e-20 102.8 115 50.4
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 2.4e-20 102.4 113 52.2
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 3.1e-20 102.1 100 56.0
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 4.0e-20 101.7 114 50.9
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 4.0e-20 101.7 115 51.3
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 4.0e-20 101.7 115 50.4
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 4.0e-20 101.7 107 54.2
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 5.3e-20 101.3 118 49.2
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 6.9e-20 100.9 114 50.9
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 6.9e-20 100.9 115 53.0
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 1.2e-19 100.1 116 49.1
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 1.2e-19 100.1 117 52.1
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 1.2e-19 100.1 117 52.1
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 2.0e-19 99.4 116 50.9
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 2.0e-19 99.4 115 49.6
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 4.5e-19 98.2 116 49.1
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 5.8e-19 97.8 116 50.0
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 9.9e-19 97.1 120 49.2
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 1.3e-18 96.7 115 48.7
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 2.2e-18 95.9 112 48.2
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 2.2e-18 95.9 115 48.7
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 2.9e-18 95.5 117 48.7
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 2.9e-18 95.5 120 49.2
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 4.9e-18 94.7 115 48.7
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 6.4e-18 94.4 122 45.1
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 8.4e-18 94.0 117 44.4
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 1.1e-17 93.6 115 47.0
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 2.4e-17 92.4 117 47.9
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 2.4e-17 92.4 115 46.1
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 3.2e-17 92.0 115 47.8
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 7.1e-17 90.9 124 45.2
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 1.2e-16 90.1 117 45.3
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 1.6e-16 89.7 115 48.7
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 3.5e-16 88.6 117 45.3
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 4.6e-16 88.2 119 44.5
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 4.6e-16 88.2 104 48.1
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 7.9e-16 87.4 117 44.4
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 7.9e-16 87.4 119 42.9
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 1.0e-15 87.0 119 43.7
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.3e-15 86.7 119 43.7
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 1.3e-15 86.7 115 43.5
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 3.0e-15 85.5 104 46.2
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 5.1e-15 84.7 115 43.5
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 6.7e-15 84.3 114 45.6
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 8.7e-15 84.0 120 44.2
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 1.1e-14 83.6 103 51.5
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.1e-14 83.6 118 42.4
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.5e-14 83.2 118 43.2
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 2.5e-14 82.4 116 44.0
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 7.4e-14 80.9 120 45.0
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 9.6e-14 80.5 105 44.8
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 1.6e-13 79.7 110 43.6
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 1.6e-13 79.7 118 41.5
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 4.8e-13 78.2 105 43.8
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 4.8e-13 78.2 115 41.7
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 1.1e-12 77.0 102 45.1
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 1.1e-12 77.0 102 45.1
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 4.0e-12 75.1 104 43.3
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 4.0e-12 75.1 104 43.3
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 4.0e-12 75.1 124 39.5
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 6.9e-12 74.3 102 44.1
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 6.9e-12 74.3 102 44.1
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 9.0e-12 73.9 110 41.8
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.5e-11 73.2 113 40.7
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 2.0e-11 72.8 93 47.3
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 7.6e-11 70.9 90 50.0
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 2.9e-10 68.9 100 44.0
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 6.4e-10 67.8 118 39.8
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 9.3e-09 63.9 44 77.3
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 2.7e-08 62.4 118 35.6
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 6.0e-08 61.2 44 70.5


User provided reference genes

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