Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 2.3e-151 538.9 272 100.0
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 1.3e-146 523.1 289 93.1
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 8.2e-117 424.1 270 78.9
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 4.1e-116 421.8 270 77.8
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 3.4e-115 418.7 270 76.7
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 2.9e-114 415.6 248 82.3
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 5.0e-114 414.8 270 76.7
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 6.5e-114 414.5 270 77.0
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.4e-113 413.3 248 81.0
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 1.2e-112 410.2 254 78.3
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 1.6e-112 409.8 254 78.3
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 1.6e-112 409.8 269 75.5
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 1.6e-112 409.8 254 78.3
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.6e-112 409.8 247 80.2
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 2.1e-112 409.5 256 78.1
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 2.1e-112 409.5 271 76.8
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 2.1e-112 409.5 269 75.1
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 2.7e-112 409.1 258 77.9
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 2.7e-112 409.1 272 73.9
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 2.7e-112 409.1 269 75.8
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 3.5e-112 408.7 269 75.1
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 6.1e-112 407.9 254 77.6
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 7.9e-112 407.5 269 75.5
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 6.7e-111 404.4 269 73.6
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 8.7e-111 404.1 256 76.2
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 8.7e-111 404.1 269 74.7
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 1.1e-110 403.7 254 77.2
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 1.5e-110 403.3 236 83.9
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 7.4e-110 401.0 247 78.5
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.6e-109 399.8 270 75.2
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 6.3e-109 397.9 254 76.0
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 1.8e-108 396.4 247 77.7
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 1.8e-108 396.4 247 77.3
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 5.3e-108 394.8 251 76.1
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 6.9e-108 394.4 256 75.8
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 9.0e-108 394.0 272 72.8
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 9.0e-108 394.0 261 75.1
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 2.0e-107 392.9 273 72.2
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 3.4e-107 392.1 256 76.6
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 3.4e-107 392.1 242 80.2
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 1.7e-106 389.8 270 70.7
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 3.8e-106 388.7 252 76.2
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 5.0e-106 388.3 250 75.2
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 6.5e-106 387.9 270 70.4
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 6.5e-106 387.9 270 70.4
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 1.4e-105 386.7 249 75.5
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 1.9e-105 386.3 272 70.6
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 1.9e-105 386.3 272 70.6
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 3.2e-105 385.6 247 75.3
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 4.2e-105 385.2 293 67.6
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 1.2e-104 383.6 268 70.5
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 1.6e-104 383.3 269 73.6
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 1.6e-104 383.3 254 74.8
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 1.6e-104 383.3 250 74.8
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 2.1e-104 382.9 269 71.4
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 2.7e-104 382.5 289 68.2
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 4.6e-104 381.7 244 77.0
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 1.8e-103 379.8 271 69.7
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 3.0e-103 379.0 261 71.3
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 2.0e-102 376.3 263 71.5
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 2.5e-102 375.9 260 71.9
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.7e-101 373.2 266 69.5
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.7e-101 373.2 266 69.5
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 2.2e-101 372.9 275 69.5
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 6.3e-101 371.3 250 73.2
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 5.3e-100 368.2 249 71.9
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 1.2e-99 367.1 272 70.6
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 1.0e-98 364.0 269 68.0
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 1.3e-98 363.6 268 67.5
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 2.2e-98 362.8 266 66.5
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 2.9e-98 362.5 256 69.1
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 6.5e-98 361.3 268 67.2
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 1.1e-97 360.5 270 68.1
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 1.4e-97 360.1 250 70.4
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 2.5e-97 359.4 237 73.4
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 3.2e-97 359.0 250 70.0
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 1.2e-96 357.1 292 64.7
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 1.6e-96 356.7 265 66.4
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 7.9e-96 354.4 268 66.0
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 3.0e-95 352.4 205 82.9
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 3.0e-95 352.4 269 66.5
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 3.9e-95 352.1 268 66.8
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 1.1e-94 350.5 246 69.5
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 1.1e-94 350.5 273 64.5
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 1.3e-93 347.1 255 67.8
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 6.3e-93 344.7 251 67.7
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 1.3e-85 320.5 269 60.2
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.4e-84 316.2 205 75.1
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 8.5e-82 307.8 251 64.5
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 7.2e-81 304.7 309 56.6
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 7.2e-81 304.7 269 59.9
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 2.1e-80 303.1 184 78.3
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 2.7e-80 302.8 265 61.5
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 4.7e-80 302.0 251 62.5
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 8.0e-80 301.2 236 65.7
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 1.4e-79 300.4 178 80.3
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.8e-79 300.1 310 56.5
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 1.5e-78 297.0 250 61.6
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 5.7e-78 295.0 270 59.3
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 1.2e-75 287.3 269 58.7
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 1.6e-75 287.0 273 59.0
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 3.5e-75 285.8 264 56.4
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 2.9e-74 282.7 265 59.2
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 2.1e-72 276.6 249 54.6
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 8.8e-71 271.2 269 55.8
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 2.6e-70 269.6 269 55.0
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 8.6e-66 254.6 164 75.6
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 3.3e-65 252.7 244 57.8
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 2.4e-60 236.5 341 47.8
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 4.1e-60 235.7 154 73.4
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 2.8e-56 223.0 292 46.6
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 1.3e-53 214.2 170 66.5
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 7.0e-52 208.4 236 48.3
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 7.8e-51 204.9 265 43.0
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 2.8e-48 196.4 212 50.0
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 6.6e-42 175.3 271 39.9
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 3.6e-40 169.5 128 64.8
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 3.2e-36 156.4 93 79.6
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 4.6e-35 152.5 110 67.3
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 3.9e-34 149.4 154 55.2
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 1.1e-28 131.3 75 84.0
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 1.9e-28 130.6 131 55.0
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 3.9e-26 122.9 93 64.5
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 3.5e-19 99.8 80 61.2
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 7.4e-17 92.0 185 33.0
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 4.0e-15 86.3 73 61.6
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 5.3e-15 85.9 82 56.1
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 4.9e-13 79.3 39 87.2
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 7.9e-11 72.0 66 56.1
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 3.9e-10 69.7 37 89.2
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 3.9e-10 69.7 37 89.2
Solyc01g057003.1 Solanum lycopersicum HOM05D005868 ORTHO05D006964 3.4e-06 56.6 40 60.0
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 7.6e-06 55.5 64 43.8
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 1.0e-05 55.1 45 60.0
RcHm_v2.0_Chr7g0205611 Rosa chinensis HOM05D005868 ORTHO05D006964 1.0e-05 55.1 55 52.7


User provided reference genes

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