Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 0.0e+00 1116.7 556 100.0
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 2.3e-267 925.2 556 82.0
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 1.7e-257 892.5 556 79.5
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 6.7e-251 870.5 552 77.4
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 3.3e-250 868.2 557 77.4
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 1.7e-249 865.9 554 77.4
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 2.2e-249 865.5 559 76.0
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 2.8e-249 865.1 560 76.2
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 2.8e-249 865.1 559 76.2
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 3.7e-249 864.8 558 76.2
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 1.1e-248 863.2 556 75.5
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 1.4e-248 862.8 561 76.1
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 2.4e-248 862.1 559 76.4
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 5.3e-248 860.9 558 75.8
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 9.1e-248 860.1 558 74.9
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 5.9e-247 857.4 557 76.3
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 5.9e-247 857.4 558 76.0
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 7.7e-247 857.1 557 76.3
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 7.7e-247 857.1 577 73.7
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 7.7e-247 857.1 564 74.8
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 2.9e-246 855.1 557 75.6
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 5.0e-246 854.4 564 74.6
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 6.5e-246 854.0 557 75.9
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 1.1e-245 853.2 557 76.3
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 1.1e-245 853.2 563 74.6
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 1.1e-245 853.2 554 75.3
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 1.1e-245 853.2 559 74.8
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 1.9e-245 852.4 558 76.0
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 3.2e-245 851.7 561 75.4
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 2.1e-244 849.0 556 74.6
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 2.7e-244 848.6 555 74.2
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 3.6e-244 848.2 556 74.6
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 3.6e-244 848.2 579 72.5
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 4.7e-244 847.8 557 74.0
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 2.3e-243 845.5 565 73.6
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 2.3e-243 845.5 557 75.9
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 4.0e-243 844.7 580 72.8
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 5.2e-243 844.3 563 74.6
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 5.2e-243 844.3 557 74.5
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.0e-242 842.4 564 74.1
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 3.4e-242 841.6 557 74.7
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 3.4e-242 841.6 559 74.2
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.7e-241 839.3 584 71.2
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 2.2e-241 839.0 557 75.0
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 2.2e-241 839.0 526 79.5
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 2.2e-241 839.0 556 74.5
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 3.7e-241 838.2 559 73.5
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 3.7e-241 838.2 557 73.4
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 6.3e-241 837.4 563 72.5
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 6.3e-241 837.4 556 74.6
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 3.1e-240 835.1 556 73.6
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 5.4e-240 834.3 554 73.8
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 9.1e-240 833.6 538 76.0
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 9.1e-240 833.6 556 73.2
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 1.2e-239 833.2 557 75.2
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 2.0e-239 832.4 555 73.3
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 3.5e-239 831.6 557 72.9
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 7.7e-239 830.5 558 72.8
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 1.0e-238 830.1 558 72.8
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 1.0e-238 830.1 546 74.5
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 1.7e-238 829.3 558 72.6
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 2.2e-238 828.9 560 72.9
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 2.9e-238 828.6 559 73.3
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 5.0e-238 827.8 540 75.6
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 8.5e-238 827.0 541 73.8
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 1.9e-237 825.9 556 72.1
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 4.2e-237 824.7 558 73.5
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 3.6e-236 821.6 557 72.7
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 4.7e-236 821.2 538 74.0
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 1.0e-235 820.1 556 72.5
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 1.4e-235 819.7 556 73.4
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 6.8e-235 817.4 557 71.6
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 6.8e-235 817.4 557 71.8
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 2.0e-234 815.8 556 72.5
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 2.0e-234 815.8 556 72.1
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 1.7e-233 812.8 534 76.2
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 3.1e-232 808.5 557 72.4
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 5.4e-232 807.7 556 71.8
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 4.5e-231 804.7 558 71.7
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.9e-231 804.3 556 71.8
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.9e-231 804.3 556 71.8
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.9e-231 804.3 556 71.8
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 1.3e-230 803.1 562 71.2
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.7e-230 802.7 558 72.4
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 2.3e-230 802.4 560 71.8
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 6.6e-230 800.8 556 71.2
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 8.6e-230 800.4 519 76.1
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 1.1e-229 800.0 549 70.7
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 1.1e-229 800.0 556 71.4
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 1.5e-229 799.7 556 71.4
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 7.3e-229 797.3 556 71.4
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 1.6e-228 796.2 557 70.6
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 1.5e-226 789.6 562 70.5
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 1.5e-226 789.6 559 69.9
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.5e-226 789.6 600 67.5
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 9.8e-226 786.9 574 69.0
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 1.7e-225 786.2 560 70.0
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 5.4e-224 781.2 550 69.6
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 9.2e-224 780.4 573 69.3
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 2.0e-223 779.2 560 69.3
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 6.6e-222 774.2 559 68.9
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 1.9e-221 772.7 550 69.1
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 5.6e-221 771.2 599 66.8
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 4.7e-220 768.1 560 68.2
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 2.3e-219 765.8 554 68.4
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 6.0e-215 751.1 561 70.1
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 1.7e-214 749.6 557 67.0
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 1.1e-213 746.9 562 66.4
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 4.0e-211 738.4 556 67.1
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 6.8e-211 737.6 543 67.6
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 8.3e-209 730.7 557 63.9
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 1.9e-208 729.6 488 74.0
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 4.1e-208 728.4 563 65.2
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.0e-206 723.8 535 68.2
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 6.8e-203 711.1 490 71.0
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 9.2e-200 700.7 536 66.6
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 1.3e-198 696.8 443 77.2
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.7e-198 696.4 563 63.6
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 3.9e-198 695.3 549 61.4
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 5.1e-182 641.7 548 56.4
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 3.8e-177 625.5 390 77.4
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 7.1e-176 621.3 566 57.8
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 4.6e-175 618.6 390 75.9
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 1.3e-172 610.5 541 56.7
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 2.8e-172 609.4 433 71.1
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 4.8e-172 608.6 391 74.4
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 1.6e-164 583.6 563 54.7
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 2.7e-159 566.2 546 53.3
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 2.7e-159 566.2 484 56.4
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 3.8e-153 545.8 322 80.7
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 2.2e-137 493.4 308 78.2
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 2.9e-129 466.5 290 79.0
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 1.5e-125 454.1 320 70.0
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 5.4e-123 445.7 291 73.2
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 3.5e-122 443.0 336 66.1
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 2.9e-121 439.9 323 66.6
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 3.6e-111 406.4 271 75.3
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 1.5e-104 384.4 274 70.4
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 1.5e-96 357.8 239 74.5
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.5e-93 347.8 246 70.3
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 2.3e-89 334.0 243 67.9
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 6.8e-86 322.4 240 67.1
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 2.4e-78 297.4 266 57.5
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.1e-54 218.8 139 75.5
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 5.3e-54 216.5 137 74.5
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.5e-53 214.9 139 73.4
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.0e-53 214.5 138 73.9
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 2.3e-49 201.1 179 57.0
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.5e-48 197.6 128 73.4
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 7.4e-48 196.1 140 70.0
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 1.9e-35 154.8 98 73.5
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 1.6e-34 151.8 98 72.4
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 1.2e-26 125.6 105 60.0
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 2.0e-21 108.2 63 73.0
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 2.0e-21 108.2 63 74.6
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 7.7e-21 106.3 63 73.0
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 1.0e-20 105.9 71 64.8
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 4.2e-19 100.5 63 74.6
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.2e-18 99.0 63 73.0
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 3.0e-17 94.4 57 66.7
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 4.0e-17 94.0 243 27.6
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 5.2e-17 93.6 73 60.3
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 2.2e-15 88.2 488 25.2
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 2.7e-13 81.3 54 66.7
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 1.1e-11 75.9 494 23.7
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 5.2e-09 67.0 54 53.7
PRCOL_00006907 Prasinoderma coloniale HOM05D013921 ORTHO05D014814 1.1e-06 59.3 226 27.4
FvH4_5g33600 Fragaria vesca HOM05D001656 ORTHO05D005043 2.4e-06 58.2 49 57.1
FAN18G3130 Fragaria x ananassa HOM05D001656 ORTHO05D005043 2.4e-06 58.2 49 57.1
Thecc.03G047200 Theobroma cacao HOM05D000075 ORTHO05D408647 3.1e-06 57.8 64 60.9


User provided reference genes

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