Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009512 Daucus carota HOM05D003173 ORTHO05D003546 5.8e-127 457.6 235 100.0
DCAR_025088 Daucus carota HOM05D003173 ORTHO05D003546 1.0e-46 191.0 260 51.5
DCAR_016740 Daucus carota HOM05D000228 ORTHO05D001545 3.6e-28 129.4 272 35.7
Oeu026120.1 Olea europaea HOM05D003173 ORTHO05D003546 8.0e-28 128.3 240 40.0
Cc10_g01130 Coffea canephora HOM05D003173 ORTHO05D003546 3.7e-25 119.4 267 36.3
CSS0028811 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 1.4e-24 117.5 256 38.3
CSS0021479 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 2.4e-24 116.7 255 36.9
MSTRG.24229 Avicennia marina HOM05D003173 ORTHO05D003546 2.7e-23 113.2 252 36.5
Manes.18G009300 Manihot esculenta HOM05D003173 ORTHO05D003546 3.5e-23 112.8 256 36.7
COL.COLO4_26083 Corchorus olitorius HOM05D003173 ORTHO05D003546 2.3e-22 110.2 252 38.1
Nn6g31907 Nelumbo nucifera HOM05D003173 ORTHO05D003546 2.9e-22 109.8 247 34.4
CiPaw.07G143600 Carya illinoinensis HOM05D003173 ORTHO05D003546 1.1e-21 107.8 261 35.2
Migut.N03186 Erythranthe guttata HOM05D003173 ORTHO05D003546 1.5e-21 107.5 254 35.4
Manes.05G142500 Manihot esculenta HOM05D003173 ORTHO05D003546 1.5e-21 107.5 257 35.4
Actinidia29769 Actinidia chinensis HOM05D000228 ORTHO05D001545 2.5e-21 106.7 237 38.8
TAR376G0945 Trochodendron aralioides HOM05D003173 ORTHO05D003546 3.3e-21 106.3 260 36.2
Rhsim06G0012200 Rhododendron simsii HOM05D003173 ORTHO05D003546 7.3e-21 105.1 249 37.8
Ciclev10002153m.g Citrus clementina HOM05D003173 ORTHO05D003546 1.2e-20 104.4 211 36.0
SalBow7G1496 Salvia bowleyana HOM05D003173 ORTHO05D003546 1.6e-20 104.0 247 37.7
Gohir.A05G182800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 2.8e-20 103.2 255 37.6
Eucgr.J02492 Eucalyptus grandis HOM05D003173 ORTHO05D003546 4.7e-20 102.4 245 34.3
TAR381G1677 Trochodendron aralioides HOM05D003173 ORTHO05D003546 6.1e-20 102.1 254 35.0
Actinidia15462 Actinidia chinensis HOM05D003173 ORTHO05D003546 1.4e-19 100.9 253 34.8
MELO3C003727.2 Cucumis melo HOM05D003173 ORTHO05D003546 1.4e-19 100.9 233 36.1
TAR628G1607 Trochodendron aralioides HOM05D003173 ORTHO05D003546 1.4e-19 100.9 259 35.1
Haze_22703 Corylus avellana HOM05D003173 ORTHO05D003546 5.2e-19 99.0 262 34.7
Aqoxy6G01958 Aquilegia oxysepala HOM05D003173 ORTHO05D003546 6.8e-19 98.6 248 34.7
ClCG05G015410 Citrullus lanatus HOM05D003173 ORTHO05D003546 6.8e-19 98.6 234 35.5
Duzib093G0730 Durio zibethinus HOM05D003173 ORTHO05D003546 6.8e-19 98.6 257 35.4
Gorai.009G191200 Gossypium raimondii HOM05D003173 ORTHO05D003546 6.8e-19 98.6 255 37.6
QL02p012938 Quercus lobata HOM05D003173 ORTHO05D003546 8.9e-19 98.2 264 33.3
Oeu057579.1 Olea europaea HOM05D003173 ORTHO05D003546 1.2e-18 97.8 246 35.4
CSS0006148 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 1.5e-18 97.4 263 35.0
Lsat_1_v5_gn_8_29221 Lactuca sativa HOM05D003173 ORTHO05D003546 1.5e-18 97.4 298 33.6
Peaxi162Scf00744g00026 Petunia axillaris HOM05D003173 ORTHO05D003546 1.5e-18 97.4 256 36.7
vmacro04379 Vaccinium macrocarpon HOM05D003173 ORTHO05D003546 1.5e-18 97.4 264 34.1
CiPaw.08G069200 Carya illinoinensis HOM05D003173 ORTHO05D003546 2.6e-18 96.7 266 35.7
Oeu051144.1 Olea europaea HOM05D003173 ORTHO05D003546 3.4e-18 96.3 252 33.3
Gohir.D05G185800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 4.4e-18 95.9 255 36.1
Cfa014008 Carpinus fangiana HOM05D003173 ORTHO05D003546 5.7e-18 95.5 263 34.6
Phvul.009G019900 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 7.5e-18 95.1 257 31.9
Thecc.08G051800 Theobroma cacao HOM05D003173 ORTHO05D003546 7.5e-18 95.1 256 35.5
Oeu039861.1 Olea europaea HOM05D003173 ORTHO05D003546 9.8e-18 94.7 246 35.0
Dinv31893 Davidia involucrata HOM05D003173 ORTHO05D003546 1.3e-17 94.4 261 36.8
Lsat_1_v5_gn_2_6961 Lactuca sativa HOM05D003173 ORTHO05D003546 2.2e-17 93.6 288 33.0
Peaxi162Scf00174g00083 Petunia axillaris HOM05D003173 ORTHO05D003546 3.7e-17 92.8 258 36.0
Gohir.D05G257500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 4.9e-17 92.4 258 33.3
Peaxi162Scf00064g00081 Petunia axillaris HOM05D003173 ORTHO05D003546 6.4e-17 92.0 262 31.7
Phvul.001G002200 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 6.4e-17 92.0 259 32.4
VMungo0647G1822 Vigna mungo HOM05D003173 ORTHO05D003546 8.3e-17 91.7 259 32.4
Gorai.009G268900 Gossypium raimondii HOM05D003173 ORTHO05D003546 1.4e-16 90.9 257 33.1
Glyma.14G222400 Glycine max HOM05D003173 ORTHO05D003546 2.4e-16 90.1 259 30.9
Atru.chr13.216 Acer truncatum HOM05D003173 ORTHO05D003546 5.4e-16 89.0 291 33.0
Gohir.A05G255800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 5.4e-16 89.0 259 31.3
TWI56G0288 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 5.4e-16 89.0 243 32.1
FAN20G0850 Fragaria x ananassa HOM05D003173 ORTHO05D003546 9.2e-16 88.2 269 35.3
CANSAT25G2829 Cannabis sativa HOM05D003173 ORTHO05D003546 1.2e-15 87.8 267 30.7
ECA233G2815 Erigeron canadensis HOM05D003173 ORTHO05D003546 1.2e-15 87.8 250 34.0
RcHm_v2.0_Chr6g0303671 Rosa chinensis HOM05D003173 ORTHO05D003546 1.2e-15 87.8 266 33.8
FvH4_2g37950 Fragaria vesca HOM05D003173 ORTHO05D003546 1.6e-15 87.4 269 33.5
Potri.002G016500 Populus trichocarpa HOM05D003173 ORTHO05D003546 2.0e-15 87.0 264 34.8
Duzib116G0616 Durio zibethinus HOM05D003173 ORTHO05D003546 2.7e-15 86.7 257 33.1
Hma1.2p1_0023F.1_g015790 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 2.7e-15 86.7 244 34.4
Nitab4.5_0000498g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 3.5e-15 86.3 267 32.6
Nitab4.5_0002353g0090 Nicotiana tabacum HOM05D003173 ORTHO05D003546 3.5e-15 86.3 268 33.6
Cpa.g.sc26.264 Carica papaya HOM05D003173 ORTHO05D003546 4.6e-15 85.9 257 31.9
PGR031G0086 Punica granatum HOM05D003173 ORTHO05D003546 5.9e-15 85.5 279 30.8
Medtr3g114750 Medicago truncatula HOM05D003173 ORTHO05D003546 7.8e-15 85.1 261 31.4
Glyma.06G020800 Glycine max HOM05D003173 ORTHO05D003546 1.0e-14 84.7 263 30.4
PGR102G2057 Punica granatum HOM05D003173 ORTHO05D003546 1.0e-14 84.7 265 31.7
PGSC0003DMG400029419 Solanum tuberosum HOM05D003173 ORTHO05D003546 1.3e-14 84.3 275 30.2
FAN15G3480 Fragaria x ananassa HOM05D003173 ORTHO05D003546 1.7e-14 84.0 268 34.3
VMungo1309G1265 Vigna mungo HOM05D003173 ORTHO05D003546 1.7e-14 84.0 257 31.9
Solyc04g081960.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 2.3e-14 83.6 262 32.4
FAN27G2702 Fragaria x ananassa HOM05D003173 ORTHO05D003546 3.0e-14 83.2 269 34.6
Lalb_Chr03g0033561 Lupinus albus HOM05D003173 ORTHO05D003546 5.0e-14 82.4 258 29.1
Nn5g30846 Nelumbo nucifera HOM05D003173 ORTHO05D003546 5.0e-14 82.4 247 30.8
PSO541G5041 Papaver somniferum HOM05D003173 ORTHO05D003546 6.6e-14 82.0 252 32.5
Prupe.1G359400 Prunus persica HOM05D003173 ORTHO05D003546 6.6e-14 82.0 252 32.9
Lalb_Chr23g0265991 Lupinus albus HOM05D003173 ORTHO05D003546 8.6e-14 81.6 253 28.9
Sabra02G0013200 Salix brachista HOM05D003173 ORTHO05D003546 8.6e-14 81.6 260 30.8
Carub.0001s1981 Capsella rubella HOM05D003173 ORTHO05D003546 1.1e-13 81.3 246 28.0
Migut.C00894 Erythranthe guttata HOM05D003173 ORTHO05D003546 1.1e-13 81.3 249 33.7
TWI12G1263 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 1.1e-13 81.3 254 31.5
Sopen04g035610 Solanum pennellii HOM05D003173 ORTHO05D003546 1.5e-13 80.9 266 32.0
MBI09_g01020_MAGBIO Magnolia biondii HOM05D003173 ORTHO05D003546 2.5e-13 80.1 258 31.4
Actinidia37954 Actinidia chinensis HOM05D003173 ORTHO05D003546 3.3e-13 79.7 201 35.8
Lalb_Chr19g0131611 Lupinus albus HOM05D003173 ORTHO05D003546 3.3e-13 79.7 282 29.1
PGSC0003DMG400009955 Solanum tuberosum HOM05D003173 ORTHO05D003546 4.3e-13 79.3 267 32.2
Potri.005G245600 Populus trichocarpa HOM05D003173 ORTHO05D003546 5.6e-13 79.0 210 32.9
Sopen12g031280 Solanum pennellii HOM05D003173 ORTHO05D003546 5.6e-13 79.0 272 28.7
AT1G20310 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 7.3e-13 78.6 249 29.3
Medtr1g026110 Medicago truncatula HOM05D003173 ORTHO05D003546 7.3e-13 78.6 261 28.7
Dinv39556 Davidia involucrata HOM05D003173 ORTHO05D003546 9.5e-13 78.2 191 37.2
Glyma.17G261300 Glycine max HOM05D003173 ORTHO05D003546 9.5e-13 78.2 236 30.9
EL10Ac1g02082 Beta vulgaris HOM05D003173 ORTHO05D003546 1.2e-12 77.8 244 31.6
CARHR069610 Cardamine hirsuta HOM05D003173 ORTHO05D003546 1.6e-12 77.4 259 29.3
Sp1g18040 Schrenkiella parvula HOM05D003173 ORTHO05D003546 1.6e-12 77.4 258 31.4
SGA_v2.0_scaffold19G08585 Striga asiatica HOM05D003173 ORTHO05D003546 1.6e-12 77.4 251 32.3
Duzib264G0532 Durio zibethinus HOM05D003173 ORTHO05D003546 2.1e-12 77.0 231 33.8
THA.LOC104811444 Tarenaya hassleriana HOM05D003173 ORTHO05D003546 2.1e-12 77.0 255 29.4
TWI73G0798 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 2.8e-12 76.6 228 31.1
COL.COLO4_22498 Corchorus olitorius HOM05D003173 ORTHO05D003546 3.6e-12 76.3 178 37.6
Solyc12g094390.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 3.6e-12 76.3 264 30.7
HanXRQChr14g0428491 Helianthus annuus HOM05D003173 ORTHO05D003546 4.7e-12 75.9 271 29.9
Psat6g001080 Pisum sativum HOM05D003173 ORTHO05D003546 6.2e-12 75.5 266 29.3
Glyma.04G020700 Glycine max HOM05D003173 ORTHO05D003546 8.0e-12 75.1 264 29.2
Sc15g0004670 Simmondsia chinensis HOM05D003173 ORTHO05D003546 1.0e-11 74.7 246 33.3
Nitab4.5_0003030g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 1.8e-11 73.9 203 37.4
AL2G36110 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 2.3e-11 73.6 267 28.8
CsaV3_3G046130 Cucumis sativus L. HOM05D003173 ORTHO05D003546 2.3e-11 73.6 217 33.2
Ca_13485_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 4.0e-11 72.8 262 30.5
CAN.G401.21 Capsicum annuum HOM05D003173 ORTHO05D003546 8.9e-11 71.6 275 30.2
Psat5g012200 Pisum sativum HOM05D003173 ORTHO05D003546 8.9e-11 71.6 255 29.0
A06p16390 Brassica napus HOM05D003173 ORTHO05D003546 1.5e-10 70.9 265 29.8
Carub.0002s2296 Capsella rubella HOM05D003173 ORTHO05D003546 1.5e-10 70.9 266 29.3
TPR.G26427 Trifolium pratense HOM05D003173 ORTHO05D003546 1.5e-10 70.9 264 27.7
BcaC08g47100 Brassica carinata HOM05D003173 ORTHO05D003546 2.0e-10 70.5 267 29.2
Sabra05G0189700 Salix brachista HOM05D003173 ORTHO05D003546 2.0e-10 70.5 261 30.7
BcaB07g32036 Brassica carinata HOM05D003173 ORTHO05D003546 2.6e-10 70.1 265 30.2
ECA238G0569 Erigeron canadensis HOM05D000315 ORTHO05D000527 2.6e-10 70.1 280 27.1
Thhalv10009337m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 2.6e-10 70.1 261 28.0
Hma1.2p1_1598F.1_g292960 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 2.6e-10 70.1 205 34.6
Lj5g0013533 Lotus japonicus HOM05D003173 ORTHO05D003546 2.6e-10 70.1 257 27.6
Thecc.01G011100 Theobroma cacao HOM05D003173 ORTHO05D003546 2.6e-10 70.1 248 32.3
arahy.Tifrunner.gnm1.ann1.S3QWAM Arachis hypogaea HOM05D003173 ORTHO05D003546 3.4e-10 69.7 293 29.7
BraA06t24743Z Brassica rapa HOM05D003173 ORTHO05D003546 4.4e-10 69.3 262 28.6
BraA07t31692Z Brassica rapa HOM05D003173 ORTHO05D003546 5.8e-10 68.9 266 29.3
Cfa007032 Carpinus fangiana HOM05D003173 ORTHO05D003546 5.8e-10 68.9 201 33.3
Sed0006911 Sechium edule HOM05D003173 ORTHO05D003546 7.5e-10 68.6 229 28.8
AT1G76070 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 9.8e-10 68.2 265 27.9
FvH4_1g11060 Fragaria vesca HOM05D003173 ORTHO05D003546 1.7e-09 67.4 236 30.9
arahy.Tifrunner.gnm1.ann1.YK013F Arachis hypogaea HOM05D003173 ORTHO05D003546 2.2e-09 67.0 294 30.3
BolC6t40040H Brassica oleracea HOM05D003173 ORTHO05D003546 2.2e-09 67.0 266 28.9
CARHR020790 Cardamine hirsuta HOM05D003173 ORTHO05D003546 2.2e-09 67.0 247 29.6
Thhalv10018992m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 2.2e-09 67.0 271 29.2
BraA07t29310Z Brassica rapa HOM05D003173 ORTHO05D003546 3.7e-09 66.2 250 30.4
Sp5g31190 Schrenkiella parvula HOM05D003173 ORTHO05D003546 3.7e-09 66.2 262 28.2
BcaB03g14324 Brassica carinata HOM05D003173 ORTHO05D003546 4.9e-09 65.9 250 30.0
AL1G33140 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 6.4e-09 65.5 205 29.3
A07p15840 Brassica napus HOM05D003173 ORTHO05D003546 6.4e-09 65.5 250 30.0
PSO675G7160 Papaver somniferum HOM05D003173 ORTHO05D003546 8.3e-09 65.1 248 30.6
Aa31LG4G6190 Aethionema arabicum HOM05D003173 ORTHO05D003546 1.1e-08 64.7 277 27.4
A07p15740 Brassica napus HOM05D003173 ORTHO05D003546 1.1e-08 64.7 205 30.7
A07p41630 Brassica napus HOM05D003173 ORTHO05D003546 1.1e-08 64.7 267 28.5
BolC7t42850H Brassica oleracea HOM05D003173 ORTHO05D003546 1.1e-08 64.7 255 29.0
BolC5t30588H Brassica oleracea HOM05D003173 ORTHO05D003546 2.4e-08 63.5 266 29.3
Gohir.D12G058500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 3.2e-08 63.2 216 29.6
arahy.Tifrunner.gnm1.ann1.WLLD0D Arachis hypogaea HOM05D003173 ORTHO05D003546 4.1e-08 62.8 287 26.1
Gorai.008G061700 Gossypium raimondii HOM05D003173 ORTHO05D003546 4.1e-08 62.8 216 29.6
Lalb_Chr08g0246301 Lupinus albus HOM05D003173 ORTHO05D003546 4.1e-08 62.8 203 28.6
Os09g0542900 Oryza sativa ssp. japonica HOM05D003173 ORTHO05D003546 4.1e-08 62.8 207 28.5
BcaC08g47302 Brassica carinata HOM05D003173 ORTHO05D003546 7.0e-08 62.0 254 29.5
CDE05G3154 Ceratophyllum demersum HOM05D001535 ORTHO05D003710 1.2e-07 61.2 247 27.5
TPR.G38194 Trifolium pratense HOM05D003173 ORTHO05D003546 1.2e-07 61.2 256 27.3
BcaC05g25935 Brassica carinata HOM05D003173 ORTHO05D003546 1.6e-07 60.8 266 28.6
C05p18890 Brassica napus HOM05D003173 ORTHO05D003546 1.6e-07 60.8 266 28.6
Haze_03701 Corylus avellana HOM05D003173 ORTHO05D003546 2.0e-07 60.5 112 35.7
Medtr8g074760 Medicago truncatula HOM05D003173 ORTHO05D003546 2.7e-07 60.1 180 33.9
BcaNung03372 Brassica carinata HOM05D003173 ORTHO05D003546 3.5e-07 59.7 255 28.6
C07p23130 Brassica napus HOM05D003173 ORTHO05D003546 3.5e-07 59.7 255 28.6
HanXRQChr12g0366681 Helianthus annuus HOM05D003173 ORTHO05D003546 3.5e-07 59.7 213 30.5
TPR.G32014 Trifolium pratense HOM05D003173 ORTHO05D003546 4.6e-07 59.3 77 49.4
C02p33480 Brassica napus HOM05D003173 ORTHO05D003546 6.0e-07 58.9 263 26.6
ATR0661G366 Amborella trichopoda HOM05D003173 ORTHO05D003546 1.0e-06 58.2 249 31.3
BraA02t07073Z Brassica rapa HOM05D003173 ORTHO05D003546 1.0e-06 58.2 262 27.5
Gohir.A12G058500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 1.0e-06 58.2 223 29.1
BolC2t09356H Brassica oleracea HOM05D003173 ORTHO05D003546 1.7e-06 57.4 264 27.3
Gorai.003G005600 Gossypium raimondii HOM05D036397 ORTHO05D047284 3.0e-06 56.6 140 34.3
BcaC03g15643 Brassica carinata HOM05D003173 ORTHO05D003546 3.9e-06 56.2 264 26.9
Nn1g08396 Nelumbo nucifera HOM05D003173 ORTHO05D003546 3.9e-06 56.2 76 38.2
CiPaw.07G063500 Carya illinoinensis HOM05D003173 ORTHO05D003546 5.0e-06 55.8 160 35.0
MBI17_g07971_MAGBIO Magnolia biondii HOM05D003173 ORTHO05D003546 8.6e-06 55.1 71 43.7


User provided reference genes

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