Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 0.0e+00 1841.2 901 100.0
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 1.9e-226 790.0 880 49.7
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 2.8e-222 776.2 915 47.9
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 9.0e-221 771.2 836 49.6
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 4.2e-202 709.1 880 45.9
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 1.7e-195 687.2 898 41.6
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 5.7e-191 672.2 782 46.8
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 2.6e-188 663.3 920 42.0
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 7.7e-188 661.8 896 42.7
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 7.7e-188 661.8 900 42.3
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 1.9e-186 657.1 834 44.8
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.2e-185 654.4 895 42.7
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 3.6e-185 652.9 935 42.4
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 1.8e-184 650.6 923 41.0
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 5.2e-184 649.0 922 41.5
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 1.5e-183 647.5 815 44.2
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 2.0e-183 647.1 892 42.7
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 2.6e-183 646.7 923 41.4
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 3.4e-183 646.4 922 41.3
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 3.4e-183 646.4 923 41.3
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 1.7e-182 644.0 912 41.0
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 3.7e-182 642.9 804 45.0
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 2.4e-181 640.2 889 42.2
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 4.1e-181 639.4 890 41.7
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 9.1e-181 638.3 903 42.7
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 2.9e-179 633.3 879 41.9
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 3.2e-178 629.8 908 40.2
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 4.2e-178 629.4 903 40.2
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 8.0e-177 625.2 886 40.6
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 6.8e-176 622.1 889 40.0
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 8.3e-174 615.1 896 40.6
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 5.4e-173 612.5 919 39.7
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 7.0e-173 612.1 915 39.8
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 1.3e-171 607.8 836 41.7
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 2.5e-170 603.6 967 39.6
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 3.6e-169 599.7 904 39.3
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 1.4e-168 597.8 830 41.6
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 9.8e-167 591.7 896 41.1
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 3.7e-166 589.7 913 39.0
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 8.3e-166 588.6 923 38.8
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 5.4e-165 585.9 827 40.7
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 7.0e-165 585.5 919 38.7
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 1.2e-164 584.7 828 40.9
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 2.0e-164 583.9 942 39.7
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 7.8e-164 582.0 831 41.6
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 2.5e-162 577.0 938 38.7
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 2.5e-162 577.0 910 38.8
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 4.3e-162 576.2 911 39.2
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 4.3e-162 576.2 912 39.5
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 5.6e-162 575.9 891 38.9
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 4.7e-161 572.8 885 39.5
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 4.0e-160 569.7 834 41.1
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 6.8e-160 568.9 918 38.3
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 4.4e-159 566.2 857 40.4
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 9.8e-159 565.1 905 38.9
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 9.8e-159 565.1 920 38.2
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.9e-157 560.8 692 43.9
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 2.4e-157 560.5 885 38.3
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 3.6e-153 546.6 919 38.5
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 6.2e-153 545.8 936 38.0
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 8.0e-153 545.4 884 37.3
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 5.2e-152 542.7 841 39.6
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 1.3e-150 538.1 878 39.2
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 1.4e-149 534.6 893 38.3
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 1.6e-148 531.2 927 38.0
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 3.9e-147 526.6 855 37.4
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 7.3e-146 522.3 927 36.4
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 4.7e-145 519.6 928 37.6
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 5.2e-144 516.2 905 37.8
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 6.8e-144 515.8 891 36.4
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 8.9e-144 515.4 949 36.4
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 7.1e-141 505.8 786 39.9
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 3.5e-140 503.4 726 40.6
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 2.5e-138 497.3 748 40.9
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 2.8e-137 493.8 838 36.6
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 1.4e-133 481.5 877 36.0
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.4e-133 480.7 880 34.8
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.2e-132 478.4 748 39.2
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 2.9e-126 457.2 869 34.4
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 1.4e-125 454.9 810 36.3
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 2.3e-123 447.6 817 34.5
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 4.3e-122 443.4 895 33.2
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 7.3e-122 442.6 843 33.7
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 1.5e-119 434.9 788 35.4
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 1.9e-117 427.9 878 34.4
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 1.6e-116 424.9 848 33.6
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 3.0e-115 420.6 844 33.2
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 3.0e-115 420.6 536 44.0
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 5.1e-115 419.9 846 32.6
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 1.3e-113 415.2 844 32.7
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 3.4e-111 407.1 904 31.9
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 2.7e-108 397.5 720 34.0
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 3.9e-99 367.1 821 33.0
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 6.3e-97 359.8 391 48.3
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 8.2e-97 359.4 925 30.9
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 2.1e-92 344.7 321 50.8
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.3e-90 337.4 778 33.4
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 3.1e-88 330.9 821 32.3
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.6e-84 318.5 527 37.4
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 5.7e-82 310.1 672 31.8
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 1.1e-80 305.8 870 29.5
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 5.9e-79 300.1 872 29.6
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 2.5e-77 294.7 920 29.9
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 2.2e-73 281.6 559 33.3
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.8e-70 270.8 771 30.4
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 7.2e-69 266.5 582 32.6
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.1e-64 252.7 606 31.0
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 2.2e-62 245.0 411 37.0
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 3.8e-62 244.2 921 26.6
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 3.2e-61 241.1 943 28.2
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 1.2e-58 232.6 499 31.5
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.5e-55 220.7 435 33.8
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.6e-52 211.1 448 34.2
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 6.8e-51 206.8 358 35.2
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 7.5e-50 203.4 469 30.9
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 4.9e-49 200.7 203 50.2
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 3.2e-48 198.0 352 34.4
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 2.8e-44 184.9 182 50.5
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 1.9e-37 162.2 288 34.4
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 4.3e-37 161.0 375 32.8
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 4.3e-37 161.0 592 26.9
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.3e-29 134.8 449 29.0
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 4.3e-29 134.4 311 28.9
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 4.3e-29 134.4 311 28.9
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 2.8e-28 131.7 213 33.8
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 8.1e-28 130.2 162 42.0
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 8.1e-28 130.2 162 42.0
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 5.8e-26 124.0 249 31.7
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 6.4e-25 120.6 608 25.0
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 8.4e-25 120.2 490 24.7
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 1.1e-24 119.8 570 24.9
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 2.4e-24 118.6 93 55.9
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 2.1e-23 115.5 207 38.2
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 3.5e-23 114.8 589 24.8
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 6.6e-22 110.5 218 36.7
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 7.3e-21 107.1 286 27.6
ATR0792G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.7e-20 104.4 397 29.2
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 6.2e-20 104.0 206 33.5
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 4.4e-18 97.8 634 22.6
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 3.5e-15 88.2 182 37.4


User provided reference genes

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