Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009350 Daucus carota HOM05D006400 ORTHO05D008039 1.3e-155 553.5 401 100.0
Lj3C13G5 Lonicera japonica HOM05D006400 ORTHO05D008039 1.4e-59 234.6 394 58.1
Sabra01G0124300 Salix brachista HOM05D006400 ORTHO05D008039 2.6e-58 230.3 391 60.9
Sabra01G0124400 Salix brachista HOM05D006400 ORTHO05D008039 2.6e-58 230.3 391 60.9
Sabra01G0124500 Salix brachista HOM05D006400 ORTHO05D008039 2.6e-58 230.3 391 60.9
Prupe.4G276000 Prunus persica HOM05D006400 ORTHO05D008039 4.8e-57 226.1 397 61.5
CAN.G1312.18 Capsicum annuum HOM05D006400 ORTHO05D008039 1.4e-56 224.6 394 52.8
Oeu052953.1 Olea europaea HOM05D006400 ORTHO05D008039 1.1e-53 214.9 391 60.4
RcHm_v2.0_Chr7g0204361 Rosa chinensis HOM05D006400 ORTHO05D008039 9.4e-53 211.8 401 53.9
Potri.001G154901 Populus trichocarpa HOM05D006400 ORTHO05D008039 2.7e-52 210.3 391 58.6
Phvul.011G001300 Phaseolus vulgaris HOM05D006400 ORTHO05D008039 6.1e-52 209.1 392 51.3
TAR628G0792 Trochodendron aralioides HOM05D006400 ORTHO05D008039 1.0e-51 208.4 392 59.2
VMungo1127G0679 Vigna mungo HOM05D006400 ORTHO05D008039 1.8e-51 207.6 392 52.8
Ca_22891_v3 Cicer arietinum L. HOM05D006400 ORTHO05D008039 3.0e-51 206.8 391 60.6
CSS0025678 Camellia sinensis var. sinensis HOM05D006400 ORTHO05D008039 1.5e-50 204.5 392 60.5
TAR628G0558 Trochodendron aralioides HOM05D006400 ORTHO05D008039 1.3e-49 201.4 391 59.3
Haze_02836 Corylus avellana HOM05D006400 ORTHO05D008039 2.8e-49 200.3 401 57.1
vmacro00015 Vaccinium macrocarpon HOM05D006400 ORTHO05D008039 2.8e-49 200.3 391 60.1
Glyma.08G238900 Glycine max HOM05D006400 ORTHO05D008039 4.8e-49 199.5 392 51.3
Glyma.15G265000 Glycine max HOM05D006400 ORTHO05D008039 4.8e-49 199.5 392 51.8
Thhalv10000870m.g Eutrema salsugineum HOM05D006400 ORTHO05D008039 6.3e-49 199.1 394 43.7
AL8G10680 Arabidopsis lyrata HOM05D006400 ORTHO05D008039 1.8e-48 197.6 396 44.9
Gohir.A02G148300 Gossypium hirsutum HOM05D006400 ORTHO05D008039 3.1e-48 196.8 395 54.7
Manes.14G149022 Manihot esculenta HOM05D006400 ORTHO05D008039 3.1e-48 196.8 401 36.9
A06p45130 Brassica napus HOM05D006400 ORTHO05D008039 4.1e-48 196.4 393 45.0
BraA06t27383Z Brassica rapa HOM05D006400 ORTHO05D008039 4.1e-48 196.4 393 45.0
Dinv25846 Davidia involucrata HOM05D006400 ORTHO05D008039 9.1e-48 195.3 393 58.5
THA.LOC104810088 Tarenaya hassleriana HOM05D006400 ORTHO05D008039 9.1e-48 195.3 389 49.9
BolC7t43646H Brassica oleracea HOM05D006400 ORTHO05D008039 1.2e-47 194.9 393 44.8
Lj3g0022967 Lotus japonicus HOM05D006400 ORTHO05D008039 2.0e-47 194.1 390 54.1
PGR042G3373 Punica granatum HOM05D006400 ORTHO05D008039 2.0e-47 194.1 390 59.2
EL10Ac5g12550 Beta vulgaris HOM05D006400 ORTHO05D008039 3.5e-47 193.4 384 58.3
MSTRG.24505 Avicennia marina HOM05D006400 ORTHO05D008039 4.5e-47 193.0 397 56.9
AT5G47360 Arabidopsis thaliana HOM05D006400 ORTHO05D008039 7.7e-47 192.2 396 48.2
C07p31010 Brassica napus HOM05D006400 ORTHO05D008039 7.7e-47 192.2 393 44.8
Carub.0008s0042 Capsella rubella HOM05D006400 ORTHO05D008039 1.0e-46 191.8 396 43.4
Nitab4.5_0002601g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 1.7e-46 191.0 392 50.3
Sp2g12080 Schrenkiella parvula HOM05D006400 ORTHO05D008039 2.2e-46 190.7 393 46.3
CARHR174040 Cardamine hirsuta HOM05D006400 ORTHO05D008039 1.5e-45 188.0 394 43.4
Lalb_Chr09g0323451 Lupinus albus HOM05D006400 ORTHO05D008039 2.5e-45 187.2 391 54.2
Nitab4.5_0007283g0050 Nicotiana tabacum HOM05D006400 ORTHO05D008039 2.5e-45 187.2 394 60.4
Solyc08g078280.1 Solanum lycopersicum HOM05D006400 ORTHO05D008039 3.2e-45 186.8 393 50.9
Migut.N02973 Erythranthe guttata HOM05D006400 ORTHO05D008039 5.5e-45 186.0 390 51.5
SHI09587 Sapria himalayana HOM05D006400 ORTHO05D008039 7.2e-45 185.7 383 44.6
Aa31csc39G30 Aethionema arabicum HOM05D006400 ORTHO05D008039 1.2e-44 184.9 392 47.4
Gohir.D03G032200 Gossypium hirsutum HOM05D006400 ORTHO05D008039 3.6e-44 183.3 395 58.0
Gorai.003G033700 Gossypium raimondii HOM05D006400 ORTHO05D008039 4.7e-44 183.0 395 58.0
BcaC06g31395 Brassica carinata HOM05D006400 ORTHO05D008039 6.1e-44 182.6 391 47.6
QL09p046276 Quercus lobata HOM05D006400 ORTHO05D008039 8.0e-44 182.2 398 54.3
Gorai.007G029300 Gossypium raimondii HOM05D006400 ORTHO05D008039 1.8e-43 181.0 391 57.5
Cc08_g12000 Coffea canephora HOM05D006400 ORTHO05D008039 4.0e-43 179.9 397 56.9
Ah.01g005640 Amaranthus hybridus HOM05D006400 ORTHO05D008039 6.7e-43 179.1 391 53.7
Gohir.D11G026800 Gossypium hirsutum HOM05D006400 ORTHO05D008039 2.0e-42 177.6 391 57.3
HanXRQChr17g0533241 Helianthus annuus HOM05D006400 ORTHO05D008039 5.7e-42 176.0 397 56.4
Peaxi162Scf00017g03140 Petunia axillaris HOM05D006400 ORTHO05D008039 5.7e-42 176.0 380 58.9
TWI15G0916 Tripterygium wilfordii HOM05D006400 ORTHO05D008039 5.7e-42 176.0 393 55.5
Medtr4g021220 Medicago truncatula HOM05D006400 ORTHO05D008039 3.7e-41 173.3 386 58.3
CANSAT25G0610 Cannabis sativa HOM05D006400 ORTHO05D008039 4.8e-41 172.9 398 54.5
Nitab4.5_0010304g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 1.8e-40 171.0 387 59.9
Hma1.2p1_1196F.1_g266040 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 2.4e-40 170.6 346 63.3
arahy.Tifrunner.gnm1.ann1.S7MQ4D Arachis hypogaea HOM05D006400 ORTHO05D008039 2.7e-39 167.2 398 47.2
MD04G1061400 Malus domestica HOM05D006400 ORTHO05D008039 1.3e-38 164.9 397 53.9
Peaxi162Scf00346g00056 Petunia axillaris HOM05D006400 ORTHO05D008039 1.7e-38 164.5 395 55.7
GSVIVG01007151001 Vitis vinifera HOM05D006400 ORTHO05D008039 2.9e-38 163.7 393 56.5
FvH4_5g19630 Fragaria vesca HOM05D006400 ORTHO05D008039 2.5e-37 160.6 396 54.8
Ciclev10019985m.g Citrus clementina HOM05D006400 ORTHO05D008039 4.2e-37 159.8 394 54.1
Eucgr.E00397 Eucalyptus grandis HOM05D006400 ORTHO05D008039 4.2e-37 159.8 391 53.7
FAN08G3355 Fragaria x ananassa HOM05D006400 ORTHO05D008039 4.2e-37 159.8 396 52.0
FAN18G2780 Fragaria x ananassa HOM05D006400 ORTHO05D008039 5.5e-37 159.5 390 53.8
TPR.G5570 Trifolium pratense HOM05D006400 ORTHO05D008039 9.4e-37 158.7 391 56.0
Manes.02G042000 Manihot esculenta HOM05D006400 ORTHO05D008039 1.2e-36 158.3 371 56.6
Thecc.03G246700 Theobroma cacao HOM05D006400 ORTHO05D008039 1.2e-36 158.3 397 55.2
Aqoxy3G01604 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 4.7e-36 156.4 398 55.0
ClCG06G010030 Citrullus lanatus HOM05D006400 ORTHO05D008039 1.8e-35 154.5 392 53.1
MD06G1055200 Malus domestica HOM05D006400 ORTHO05D008039 3.0e-35 153.7 394 48.2
SGA_v2.0_scaffold54G19637 Striga asiatica HOM05D006400 ORTHO05D008039 5.2e-35 152.9 395 46.3
PGSC0003DMG400039297 Solanum tuberosum HOM05D006400 ORTHO05D008039 6.8e-35 152.5 393 43.8
Atru.chr9.1257 Acer truncatum HOM05D006400 ORTHO05D008039 8.8e-35 152.1 397 51.1
DCAR_028626 Daucus carota HOM05D006400 ORTHO05D008039 1.5e-34 151.4 355 59.7
Lsat_1_v5_gn_4_109281 Lactuca sativa HOM05D006400 ORTHO05D008039 2.0e-34 151.0 375 57.6
PGR042G3592 Punica granatum HOM05D006400 ORTHO05D008039 4.4e-34 149.8 390 55.4
CsaV3_2G011310 Cucumis sativus L. HOM05D006400 ORTHO05D008039 5.7e-34 149.4 394 47.0
Sed0010566 Sechium edule HOM05D006400 ORTHO05D008039 2.2e-33 147.5 401 47.6
Cpa.g.sc89.62 Carica papaya HOM05D006400 ORTHO05D008039 1.8e-32 144.4 397 47.4
COL.COLO4_37104 Corchorus olitorius HOM05D006400 ORTHO05D008039 1.2e-31 141.7 381 55.4
Sopen08g026780 Solanum pennellii HOM05D006400 ORTHO05D008039 1.6e-31 141.4 393 46.6
MBI10_g34776_MAGBIO Magnolia biondii HOM05D000931 ORTHO05D001924 5.9e-31 139.4 394 53.3
Rhsim13G0212900 Rhododendron simsii HOM05D006400 ORTHO05D008039 1.0e-30 138.7 370 57.3
CiPaw.16G085600 Carya illinoinensis HOM05D006400 ORTHO05D008039 2.3e-30 137.5 394 52.8
Hund12818 Selenicereus undatus HOM05D006400 ORTHO05D008039 1.1e-29 135.2 391 53.7
BcaC06g34259 Brassica carinata HOM05D006400 ORTHO05D008039 2.5e-29 134.0 348 31.6
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 2.5e-29 134.0 343 58.0
Hma1.2p1_1196F.1_g266060 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 7.2e-29 132.5 92 66.3
Sc01g0008230 Simmondsia chinensis HOM05D006400 ORTHO05D008039 9.5e-29 132.1 328 61.0
SalBow1G4333 Salvia bowleyana HOM05D006400 ORTHO05D008039 1.6e-28 131.3 363 55.1
AUR62018329 Chenopodium quinoa HOM05D006400 ORTHO05D008039 3.0e-27 127.1 138 46.4
AUR62035870 Chenopodium quinoa HOM05D006400 ORTHO05D008039 8.8e-27 125.6 342 45.0
MELO3C008512.2 Cucumis melo HOM05D006400 ORTHO05D008039 2.6e-26 124.0 394 43.7
Actinidia14396 Actinidia chinensis HOM05D006400 ORTHO05D008039 3.4e-26 123.6 83 67.5
Gohir.A11G027600 Gossypium hirsutum HOM05D006400 ORTHO05D008039 3.4e-26 123.6 129 47.3
Duzib068G0402 Durio zibethinus HOM05D006400 ORTHO05D008039 9.8e-26 122.1 345 58.8
AUR62035872 Chenopodium quinoa HOM05D000268 ORTHO05D008039 1.1e-24 118.6 130 47.7
ECA236G1262 Erigeron canadensis HOM05D006400 ORTHO05D008039 4.1e-24 116.7 298 62.4
QL01p026672 Quercus lobata HOM05D006400 ORTHO05D008039 9.2e-24 115.5 97 58.8
Gorai.005G166300 Gossypium raimondii HOM05D006400 ORTHO05D008039 5.9e-23 112.8 216 54.2
Nn4g24039 Nelumbo nucifera HOM05D006400 ORTHO05D008039 7.8e-23 112.5 98 54.1
Gohir.D02G148280 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.0e-22 112.1 216 54.6
BcaC06g31398 Brassica carinata HOM05D006400 ORTHO05D008039 3.8e-22 110.2 138 42.0
Gohir.A03G125450 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.9e-21 107.8 119 45.4
VMungo0251G3116 Vigna mungo HOM05D006400 ORTHO05D008039 3.3e-21 107.1 135 43.7
Peaxi162Scf00242g00094 Petunia axillaris HOM05D006400 ORTHO05D008039 5.2e-19 99.8 87 57.5
Aqoxy6G02102 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 9.2e-16 89.0 123 39.8
TPR.G39692 Trifolium pratense HOM05D006400 ORTHO05D008039 9.2e-16 89.0 66 62.1
FAN13G1818 Fragaria x ananassa HOM05D006400 ORTHO05D008039 8.6e-14 82.4 106 39.6
ATR0697G201 Amborella trichopoda HOM05D006400 ORTHO05D008039 1.5e-13 81.6 95 43.2
Zm00001eb009290 Zea mays HOM05D006400 ORTHO05D008039 5.6e-13 79.7 140 37.1
Psat7g239440 Pisum sativum HOM05D006400 ORTHO05D008039 7.3e-13 79.3 194 46.4
Lsat_1_v5_gn_4_109201 Lactuca sativa HOM05D006400 ORTHO05D008039 1.1e-11 75.5 77 51.9
PSO541G3795 Papaver somniferum HOM05D006400 ORTHO05D008039 2.0e-10 71.2 113 38.1
SEGI_21761 Sequoiadendron giganteum HOM05D006400 ORTHO05D008039 2.6e-10 70.9 81 40.7
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 3.7e-09 67.0 60 58.3
SEGI_12141 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 4.1e-08 63.5 97 33.0
BraA10t45038Z Brassica rapa HOM05D006596 ORTHO05D008497 9.2e-08 62.4 109 27.5
FvH4_5g25662 Fragaria vesca HOM05D000424 ORTHO05D000355 1.6e-07 61.6 105 29.5
PSO675G7384 Papaver somniferum HOM05D006400 ORTHO05D008039 2.0e-07 61.2 125 32.0
SEGI_34039 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 2.0e-07 61.2 106 31.1
C09p70390 Brassica napus HOM05D006596 ORTHO05D008497 3.5e-07 60.5 109 25.7
SGA_v2.0_scaffold105G30402 Striga asiatica HOM05D000424 ORTHO05D000355 3.5e-07 60.5 105 29.5
RhsimUnG0134300 Rhododendron simsii HOM05D000424 ORTHO05D000355 6.0e-07 59.7 108 27.8
RhsimUnG0143400 Rhododendron simsii HOM05D000424 ORTHO05D000355 6.0e-07 59.7 108 27.8
Ciclev10000789m.g Citrus clementina HOM05D000424 ORTHO05D000355 1.0e-06 58.9 106 28.3
Ciclev10010964m.g Citrus clementina HOM05D006596 ORTHO05D008497 1.0e-06 58.9 109 26.6
FAN04G1593 Fragaria x ananassa HOM05D006400 ORTHO05D008039 1.0e-06 58.9 52 55.8
MBI18_g10377_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 1.0e-06 58.9 105 32.4
Prupe.1G490700 Prunus persica HOM05D000424 ORTHO05D000355 1.0e-06 58.9 105 28.6
Thecc.08G051600 Theobroma cacao HOM05D000424 ORTHO05D000355 1.0e-06 58.9 106 28.3
Cc03_g13390 Coffea canephora HOM05D007128 ORTHO05D009059 1.3e-06 58.5 106 32.1
Aqoxy3G00841 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 1.7e-06 58.2 105 30.5
RcHm_v2.0_Chr7g0215971 Rosa chinensis HOM05D000424 ORTHO05D000355 1.7e-06 58.2 105 27.6
SHI09190 Sapria himalayana HOM05D000424 ORTHO05D000355 1.7e-06 58.2 105 30.5
TWI36G0926 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 1.7e-06 58.2 106 29.2
MSTRG.26768 Avicennia marina HOM05D007128 ORTHO05D009059 2.3e-06 57.8 112 25.9
Eucgr.F03831 Eucalyptus grandis HOM05D000424 ORTHO05D000355 2.3e-06 57.8 105 29.5
Nn1g07956 Nelumbo nucifera HOM05D000424 ORTHO05D000355 2.3e-06 57.8 106 28.3
Sp6g36450 Schrenkiella parvula HOM05D006596 ORTHO05D008497 2.3e-06 57.8 109 25.7
TAR374G0752 Trochodendron aralioides HOM05D000424 ORTHO05D000355 2.3e-06 57.8 105 30.5
CSS0046383 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 3.0e-06 57.4 108 31.5
Solyc11g070040.3 Solanum lycopersicum HOM05D000424 ORTHO05D000355 3.0e-06 57.4 105 30.5
Sopen11g028720 Solanum pennellii HOM05D000424 ORTHO05D000355 3.0e-06 57.4 105 30.5
PGSC0003DMG400025520 Solanum tuberosum HOM05D000424 ORTHO05D000355 3.0e-06 57.4 105 30.5
Dinv27276 Davidia involucrata HOM05D000424 ORTHO05D000355 3.9e-06 57.0 105 29.5
LjContig00408g0001360 Lotus japonicus HOM05D000424 ORTHO05D000355 3.9e-06 57.0 104 30.8
PGR042G3217 Punica granatum HOM05D000424 ORTHO05D000355 3.9e-06 57.0 105 28.6
CSS0003119 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 5.0e-06 56.6 108 31.5
MD05G1026300 Malus domestica HOM05D000424 ORTHO05D000355 5.0e-06 56.6 105 27.6
RcHm_v2.0_Chr7g0216001 Rosa chinensis HOM05D000424 ORTHO05D000355 5.0e-06 56.6 105 26.7
Gohir.A05G183000 Gossypium hirsutum HOM05D000424 ORTHO05D000355 6.6e-06 56.2 106 27.4
Gorai.009G191300 Gossypium raimondii HOM05D000424 ORTHO05D000355 6.6e-06 56.2 106 27.4
Cpa.g.sc26.266 Carica papaya HOM05D000424 ORTHO05D000355 8.6e-06 55.8 106 26.4
CDE10G0902 Ceratophyllum demersum HOM05D000424 ORTHO05D000355 8.6e-06 55.8 105 29.5


User provided reference genes

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