Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 1.7e-213 745.7 367 100.0
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 1.7e-157 559.7 363 75.8
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 1.2e-155 553.5 324 80.2
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 1.3e-154 550.1 363 74.9
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 3.9e-154 548.5 363 75.2
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 6.6e-154 547.7 363 74.9
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 3.3e-153 545.4 364 74.5
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 2.8e-152 542.3 370 73.2
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 3.6e-152 542.0 363 74.1
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 8.1e-152 540.8 374 71.4
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 8.1e-152 540.8 372 73.9
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 8.1e-152 540.8 299 84.9
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 1.1e-151 540.4 366 71.6
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 1.2e-150 537.0 371 72.8
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 1.5e-150 536.6 370 72.7
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 2.6e-150 535.8 311 80.4
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 2.6e-150 535.8 315 80.6
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 3.4e-150 535.4 368 73.6
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 4.4e-150 535.0 371 72.2
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 5.8e-150 534.6 367 73.0
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 5.8e-150 534.6 366 73.0
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 7.6e-150 534.3 374 70.6
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 7.6e-150 534.3 365 74.0
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 1.3e-149 533.5 376 72.3
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 1.3e-149 533.5 349 75.6
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 2.2e-149 532.7 360 73.9
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 4.9e-149 531.6 361 71.2
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 1.1e-148 530.4 365 71.8
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 1.9e-148 529.6 320 77.8
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 3.2e-148 528.9 366 72.4
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 7.1e-148 527.7 367 70.3
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 1.6e-147 526.6 360 72.5
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 3.5e-147 525.4 367 71.7
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 3.5e-147 525.4 363 72.2
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 6.0e-147 524.6 372 71.5
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 6.0e-147 524.6 370 72.2
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 6.0e-147 524.6 364 70.9
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 7.8e-147 524.2 368 72.6
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 1.3e-146 523.5 352 72.7
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.3e-146 523.5 364 71.2
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 1.3e-146 523.5 371 69.5
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 2.3e-146 522.7 352 73.0
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 3.0e-146 522.3 372 70.4
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 3.9e-146 521.9 370 68.9
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 6.6e-146 521.2 368 71.5
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 6.6e-146 521.2 297 80.8
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 1.1e-145 520.4 385 68.3
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.5e-145 520.0 365 70.4
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 2.5e-145 519.2 363 70.8
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 2.5e-145 519.2 368 70.9
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 2.5e-145 519.2 368 70.4
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 4.3e-145 518.5 347 73.5
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 5.6e-145 518.1 319 75.9
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 9.6e-145 517.3 365 70.7
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 9.6e-145 517.3 356 72.8
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 9.6e-145 517.3 367 71.1
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 1.2e-144 516.9 365 69.0
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.6e-144 516.5 362 71.3
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 1.6e-144 516.5 373 72.7
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 2.1e-144 516.2 365 70.1
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 2.8e-144 515.8 369 70.5
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 3.6e-144 515.4 372 69.1
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 8.1e-144 514.2 360 69.4
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 1.4e-143 513.5 319 75.2
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 1.4e-143 513.5 366 69.9
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 1.8e-143 513.1 365 69.3
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 3.1e-143 512.3 314 77.1
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 4.0e-143 511.9 348 71.0
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 5.2e-143 511.5 321 75.7
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 5.2e-143 511.5 316 76.3
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 5.2e-143 511.5 348 71.0
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 5.2e-143 511.5 374 69.5
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 6.9e-143 511.1 357 71.1
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 6.9e-143 511.1 318 76.1
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 1.2e-142 510.4 373 71.8
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 2.0e-142 509.6 316 75.0
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 3.4e-142 508.8 363 69.7
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 4.4e-142 508.4 349 69.3
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 4.4e-142 508.4 349 69.3
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 4.4e-142 508.4 369 66.9
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 5.8e-142 508.1 356 70.8
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 1.7e-141 506.5 365 69.3
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 1.7e-141 506.5 364 68.4
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 2.2e-141 506.1 356 70.5
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 2.2e-141 506.1 356 70.5
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 2.2e-141 506.1 352 69.9
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.2e-141 506.1 357 71.1
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 2.9e-141 505.8 369 68.3
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 3.8e-141 505.4 354 71.5
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 1.4e-140 503.4 381 67.2
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 3.2e-140 502.3 366 66.4
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 3.2e-140 502.3 363 68.3
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 1.6e-139 500.0 320 74.7
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 6.0e-139 498.0 363 66.7
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 7.8e-139 497.7 369 68.0
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.5e-137 493.4 352 69.6
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 1.3e-136 490.3 359 66.6
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 1.3e-136 490.3 360 68.3
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 1.6e-136 490.0 374 67.9
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 2.1e-136 489.6 312 74.4
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.1e-135 487.3 362 68.0
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 5.3e-135 485.0 355 70.1
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 9.0e-135 484.2 318 74.2
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.9e-133 479.2 483 54.7
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 7.1e-132 474.6 333 67.6
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 7.1e-132 474.6 396 64.1
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 2.8e-128 462.6 325 71.1
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 1.9e-124 449.9 392 60.2
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.6e-123 446.8 329 68.1
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 5.1e-122 441.8 292 73.6
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 9.6e-121 437.6 277 76.9
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 3.1e-119 432.6 308 65.9
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 1.3e-117 427.2 323 65.9
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 2.1e-112 409.8 316 66.1
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 2.1e-112 409.8 287 68.3
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 3.7e-112 409.1 283 67.1
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 2.7e-107 392.9 286 65.7
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 1.3e-106 390.6 288 68.4
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.8e-106 390.2 244 74.6
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 1.8e-103 380.2 287 63.4
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 3.4e-102 375.9 282 66.7
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 9.4e-100 367.9 293 61.1
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 8.5e-93 344.7 256 71.1
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 9.4e-92 341.3 275 59.6
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.6e-91 340.5 294 55.8
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 4.4e-89 332.4 261 66.3
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 5.9e-86 322.0 278 61.5
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 3.7e-80 302.8 288 53.8
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 1.3e-77 294.3 168 82.1
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 1.3e-72 277.7 150 86.7
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 2.0e-62 243.8 229 55.0
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 3.6e-59 233.0 127 83.5
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 4.0e-58 229.6 125 81.6
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.9e-48 196.8 327 39.8
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 1.3e-45 188.0 146 62.3
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.4e-42 177.9 100 78.0
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 1.5e-41 174.5 146 59.6
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 5.4e-39 166.0 146 58.2
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 5.1e-37 159.5 95 69.5
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 6.8e-34 149.1 146 52.7
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.3e-32 144.8 110 60.9
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 2.7e-30 137.1 72 90.3
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.9e-20 104.4 64 79.7
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 1.3e-19 101.7 117 49.6
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 1.2e-17 95.1 57 70.2
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 3.2e-15 87.0 67 59.7
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 3.2e-15 87.0 67 59.7
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 6.0e-14 82.8 44 79.5
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 1.3e-13 81.6 44 79.5
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 2.3e-13 80.9 43 81.4
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 3.3e-12 77.0 41 78.0
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 3.1e-10 70.5 35 80.0
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 1.3e-08 65.1 40 77.5
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 1.2e-06 58.5 116 29.3
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 4.6e-06 56.6 70 45.7


User provided reference genes

Program Settings