Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 3.0e-238 828.2 433 100.0
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.1e-175 619.4 430 75.3
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.1e-171 605.1 432 74.3
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 1.5e-168 596.7 433 72.3
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 1.5e-168 596.7 433 72.5
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 9.5e-168 594.0 432 72.9
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 1.6e-167 593.2 430 70.9
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.1e-167 592.8 430 73.5
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 3.6e-167 592.0 431 72.9
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.3e-166 589.3 434 70.3
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 8.9e-166 587.4 427 70.3
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 7.5e-165 584.3 432 71.8
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 8.3e-164 580.9 428 70.6
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 1.4e-163 580.1 447 70.0
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 7.0e-163 577.8 418 70.8
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 1.2e-162 577.0 426 71.4
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 1.2e-162 577.0 432 69.2
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 1.6e-162 576.6 435 68.3
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 2.7e-162 575.9 432 68.1
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 4.6e-162 575.1 428 69.4
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 1.3e-161 573.5 429 71.1
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 5.0e-161 571.6 432 68.3
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 1.5e-160 570.1 434 68.7
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 2.5e-160 569.3 434 68.0
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 3.3e-160 568.9 428 68.7
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 5.6e-160 568.2 434 68.2
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 1.8e-158 563.1 422 69.0
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 1.5e-157 560.1 428 66.4
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 4.4e-157 558.5 431 68.0
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 7.5e-157 557.8 431 66.8
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 7.5e-157 557.8 431 66.6
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 1.3e-156 557.0 431 67.7
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 2.2e-156 556.2 433 68.1
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 6.4e-156 554.7 422 68.0
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 8.3e-156 554.3 432 66.7
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 5.4e-155 551.6 436 68.3
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.1e-154 549.7 435 67.6
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 2.1e-154 549.7 430 65.6
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 2.7e-154 549.3 371 77.1
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 4.6e-154 548.5 429 66.0
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.0e-153 547.4 430 65.1
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 1.3e-153 547.0 430 65.3
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 2.3e-153 546.2 429 65.5
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 5.1e-153 545.0 433 65.4
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 6.6e-153 544.7 417 64.7
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.9e-152 543.1 468 63.2
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 2.5e-152 542.7 431 65.4
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.1e-150 537.3 438 67.4
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 1.8e-150 536.6 428 64.5
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 3.1e-150 535.8 429 65.7
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 1.5e-149 533.5 433 64.7
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 2.6e-149 532.7 429 65.5
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 3.4e-149 532.3 431 65.2
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 4.4e-149 531.9 411 67.4
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 1.3e-148 530.4 433 64.7
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 1.7e-148 530.0 428 63.3
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 6.4e-148 528.1 428 66.4
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 6.4e-148 528.1 429 65.0
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 1.1e-147 527.3 428 65.7
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 2.4e-147 526.2 432 65.0
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 4.1e-147 525.4 412 66.7
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 1.2e-146 523.9 429 63.4
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 2.1e-146 523.1 432 64.8
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 2.1e-146 523.1 439 64.0
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 2.7e-146 522.7 425 64.0
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 3.5e-146 522.3 429 63.6
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 4.6e-146 521.9 412 67.0
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 4.6e-146 521.9 412 67.0
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 7.8e-146 521.2 430 63.7
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 7.8e-146 521.2 429 63.9
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 1.0e-145 520.8 430 64.7
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 1.3e-145 520.4 430 64.4
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 5.1e-145 518.5 478 62.6
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 1.2e-143 513.8 426 65.0
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 1.2e-143 513.8 426 65.0
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 1.6e-143 513.5 415 62.4
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 1.6e-143 513.5 431 63.3
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 1.6e-143 513.5 424 64.6
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 2.1e-143 513.1 417 63.5
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 6.2e-143 511.5 435 62.1
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 8.1e-143 511.1 416 62.7
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 8.1e-143 511.1 438 61.6
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 8.1e-143 511.1 417 68.3
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 8.1e-143 511.1 427 64.2
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 4.0e-142 508.8 438 61.0
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 5.2e-142 508.4 425 66.8
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 6.8e-142 508.1 518 56.6
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 1.2e-141 507.3 437 61.1
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 6.4e-140 501.5 415 62.7
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 8.4e-140 501.1 424 62.0
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 7.1e-139 498.0 426 63.1
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 1.0e-137 494.2 438 60.3
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 1.3e-137 493.8 438 59.8
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 1.3e-137 493.8 418 62.9
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 1.1e-136 490.7 414 63.3
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 1.9e-136 490.0 427 62.1
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 2.5e-136 489.6 427 62.1
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 4.8e-135 485.3 427 61.6
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 6.2e-135 485.0 432 59.0
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 6.9e-134 481.5 438 58.4
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 9.0e-134 481.1 413 62.2
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.5e-133 480.3 409 63.8
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 2.0e-133 479.9 438 58.2
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 9.9e-133 477.6 437 57.4
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 9.9e-133 477.6 420 59.8
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 2.2e-132 476.5 436 58.7
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 2.2e-132 476.5 387 64.1
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 8.4e-132 474.6 437 57.4
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 1.9e-131 473.4 408 63.0
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 9.3e-131 471.1 434 57.6
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 2.1e-130 469.9 431 60.8
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 2.7e-130 469.5 385 63.6
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.5e-128 463.0 433 62.8
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.5e-128 463.0 427 60.0
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 4.8e-127 458.8 432 56.5
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 5.3e-126 455.3 432 57.2
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 5.3e-126 455.3 524 52.9
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 9.9e-125 451.1 432 56.7
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 2.4e-123 446.4 428 56.1
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.2e-122 444.1 421 58.0
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 1.4e-118 430.6 314 72.9
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 1.4e-110 404.1 430 52.8
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 4.5e-109 399.1 322 69.6
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 3.7e-103 379.4 429 51.5
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 4.8e-103 379.0 294 65.3
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 5.9e-101 372.1 344 59.0
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 1.9e-99 367.1 300 62.7
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.5e-96 356.7 408 47.8
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 8.5e-92 341.7 282 62.4
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 3.2e-91 339.7 409 46.0
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 3.3e-80 303.1 251 62.9
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 2.8e-79 300.1 322 54.3
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.7e-76 290.8 420 44.8
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 8.0e-74 282.0 202 74.3
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 9.1e-70 268.5 179 74.9
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 1.2e-61 241.5 179 68.2
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 2.8e-58 230.3 188 63.3
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.2e-56 224.9 178 65.2
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.9e-55 220.3 161 73.9
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 1.2e-48 198.4 153 64.7
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.9e-46 191.0 147 72.8
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 4.0e-41 173.3 138 60.1
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 2.2e-39 167.5 242 44.6
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 3.6e-34 150.2 120 66.7
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 2.1e-26 124.4 112 59.8
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 1.2e-24 118.6 83 69.9
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 7.1e-22 109.4 97 60.8
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.1e-19 102.1 127 47.2
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 1.1e-19 102.1 79 68.4
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.6e-18 98.2 105 53.3
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 3.2e-14 84.0 435 25.7
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 7.9e-13 79.3 325 26.5
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 3.0e-12 77.4 386 24.1
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 8.1e-10 69.3 53 66.0
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 8.4e-07 59.3 43 65.1
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 1.1e-06 58.9 247 24.3
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 1.4e-06 58.5 284 20.1
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 4.2e-06 57.0 194 26.3
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 4.2e-06 57.0 201 25.4
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 5.5e-06 56.6 195 25.6


User provided reference genes

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