Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009199 Daucus carota HOM05D002549 ORTHO05D002755 6.4e-51 203.8 101 100.0
DCAR_017826 Daucus carota HOM05D002549 ORTHO05D002755 1.4e-18 96.3 108 56.5
Hma1.2p1_0665F.1_g199110 Hydrangea macrophylla HOM05D002549 ORTHO05D002755 4.2e-18 94.7 97 58.8
Cc06_g08750 Coffea canephora HOM05D002549 ORTHO05D002755 5.1e-16 87.8 103 53.4
Dinv41529 Davidia involucrata HOM05D002549 ORTHO05D002755 5.7e-15 84.3 94 55.3
MSTRG.11120 Avicennia marina HOM05D002549 ORTHO05D002755 4.1e-13 78.2 118 43.2
CAN.G377.7 Capsicum annuum HOM05D002549 ORTHO05D002755 9.1e-13 77.0 97 50.5
Peaxi162Scf00641g00003 Petunia axillaris HOM05D002549 ORTHO05D002755 9.1e-13 77.0 95 48.4
Actinidia26401 Actinidia chinensis HOM05D002549 ORTHO05D002755 1.2e-12 76.6 102 51.0
Ah.14g080260 Amaranthus hybridus HOM05D002549 ORTHO05D002755 1.2e-12 76.6 96 51.0
CSS0001526 Camellia sinensis var. sinensis HOM05D002549 ORTHO05D002755 1.6e-12 76.3 96 49.0
CSS0031007 Camellia sinensis var. sinensis HOM05D002549 ORTHO05D002755 1.6e-12 76.3 96 49.0
ClCG07G012770 Citrullus lanatus HOM05D002549 ORTHO05D002755 2.0e-12 75.9 119 46.2
Lsat_1_v5_gn_5_97080 Lactuca sativa HOM05D002549 ORTHO05D002755 2.0e-12 75.9 103 46.6
Sed0016403 Sechium edule HOM05D002549 ORTHO05D002755 4.5e-12 74.7 116 44.8
Medtr4g011060 Medicago truncatula HOM05D002549 ORTHO05D002755 5.9e-12 74.3 105 47.6
Oeu063538.1 Olea europaea HOM05D002549 ORTHO05D002755 5.9e-12 74.3 99 46.5
Peaxi162Scf00984g00014 Petunia axillaris HOM05D002549 ORTHO05D002755 5.9e-12 74.3 101 45.5
Hma1.2p1_0018F.1_g012630 Hydrangea macrophylla HOM05D002549 ORTHO05D002755 1.0e-11 73.6 96 49.0
Actinidia07432 Actinidia chinensis HOM05D002549 ORTHO05D002755 3.8e-11 71.6 101 49.5
Nn8g39394 Nelumbo nucifera HOM05D002549 ORTHO05D002755 3.8e-11 71.6 112 42.9
Lsat_1_v5_gn_7_45781 Lactuca sativa HOM05D002549 ORTHO05D002755 5.0e-11 71.2 105 49.5
Nitab4.5_0004056g0010 Nicotiana tabacum HOM05D002549 ORTHO05D002755 5.0e-11 71.2 97 46.4
EL10Ac8g18620 Beta vulgaris HOM05D002549 ORTHO05D002755 1.5e-10 69.7 97 43.3
Duzib168G1278 Durio zibethinus HOM05D002549 ORTHO05D002755 1.5e-10 69.7 105 48.6
Sc18g0000680 Simmondsia chinensis HOM05D002549 ORTHO05D002755 1.5e-10 69.7 88 48.9
Duzib235G0326 Durio zibethinus HOM05D002549 ORTHO05D002755 1.9e-10 69.3 132 42.4
Lj3g0000921 Lotus japonicus HOM05D002549 ORTHO05D002755 1.9e-10 69.3 105 45.7
TAR625G1243 Trochodendron aralioides HOM05D002549 ORTHO05D002755 1.9e-10 69.3 114 43.0
Potri.003G062200 Populus trichocarpa HOM05D002549 ORTHO05D002755 2.5e-10 68.9 130 38.5
arahy.Tifrunner.gnm1.ann1.62RLPM Arachis hypogaea HOM05D002549 ORTHO05D002755 3.2e-10 68.6 102 45.1
COL.COLO4_05774 Corchorus olitorius HOM05D002549 ORTHO05D002755 3.2e-10 68.6 89 50.6
MELO3C017897.2 Cucumis melo HOM05D002549 ORTHO05D002755 3.2e-10 68.6 117 42.7
Sopen12g002570 Solanum pennellii HOM05D002549 ORTHO05D002755 4.2e-10 68.2 97 47.4
AUR62011092 Chenopodium quinoa HOM05D002549 ORTHO05D002755 7.2e-10 67.4 103 44.7
Glyma.07G031900 Glycine max HOM05D002549 ORTHO05D002755 7.2e-10 67.4 105 45.7
Gorai.009G018700 Gossypium raimondii HOM05D002549 ORTHO05D002755 7.2e-10 67.4 103 44.7
Thecc.06G070600 Theobroma cacao HOM05D002549 ORTHO05D002755 7.2e-10 67.4 134 40.3
arahy.Tifrunner.gnm1.ann1.CZ6M1X Arachis hypogaea HOM05D002549 ORTHO05D002755 9.4e-10 67.0 99 49.5
CiPaw.02G155200 Carya illinoinensis HOM05D002549 ORTHO05D002755 9.4e-10 67.0 120 40.0
Gohir.A05G017400 Gossypium hirsutum HOM05D002549 ORTHO05D002755 9.4e-10 67.0 103 44.7
Nn2g11971 Nelumbo nucifera HOM05D002549 ORTHO05D002755 9.4e-10 67.0 105 44.8
CsaV3_4G001430 Cucumis sativus L. HOM05D002549 ORTHO05D002755 1.2e-09 66.6 119 42.0
PGSC0003DMG400020666 Solanum tuberosum HOM05D002549 ORTHO05D002755 1.2e-09 66.6 92 51.1
HPP92_009843 Vanilla planifolia HOM05D005526 ORTHO05D006802 1.2e-09 66.6 103 42.7
Gohir.D07G038900 Gossypium hirsutum HOM05D002549 ORTHO05D002755 1.6e-09 66.2 97 47.4
Gorai.001G041000 Gossypium raimondii HOM05D002549 ORTHO05D002755 1.6e-09 66.2 97 47.4
Gohir.D05G018300 Gossypium hirsutum HOM05D002549 ORTHO05D002755 2.7e-09 65.5 103 43.7
Sed0026525 Sechium edule HOM05D002549 ORTHO05D002755 2.7e-09 65.5 100 44.0
Dinv30577 Davidia involucrata HOM05D002549 ORTHO05D002755 3.6e-09 65.1 110 40.9
Glyma.08G210800 Glycine max HOM05D002549 ORTHO05D002755 3.6e-09 65.1 99 44.4
Prupe.7G240000 Prunus persica HOM05D002549 ORTHO05D002755 3.6e-09 65.1 112 41.1
Atru.chr7.2390 Acer truncatum HOM05D002549 ORTHO05D002755 4.7e-09 64.7 102 43.1
CiPaw.01G245100 Carya illinoinensis HOM05D002549 ORTHO05D002755 6.1e-09 64.3 118 40.7
Sabra01G0139600 Salix brachista HOM05D002549 ORTHO05D002755 6.1e-09 64.3 116 37.9
TPR.G38685 Trifolium pratense HOM05D002549 ORTHO05D002755 6.1e-09 64.3 94 50.0
TAR383G0202 Trochodendron aralioides HOM05D002549 ORTHO05D002755 6.1e-09 64.3 112 39.3
Duzib187G0701 Durio zibethinus HOM05D002549 ORTHO05D002755 8.0e-09 63.9 107 43.0
MD02G1035000 Malus domestica HOM05D002549 ORTHO05D002755 8.0e-09 63.9 110 41.8
Aqoxy7G02107 Aquilegia oxysepala HOM05D002549 ORTHO05D002755 1.0e-08 63.5 95 44.2
Migut.I00796 Erythranthe guttata HOM05D002549 ORTHO05D002755 1.0e-08 63.5 109 40.4
Manes.11G053601 Manihot esculenta HOM05D002549 ORTHO05D002755 1.0e-08 63.5 118 38.1
Oeu033467.1 Olea europaea HOM05D002549 ORTHO05D002755 1.0e-08 63.5 105 41.9
Psat7g255840 Pisum sativum HOM05D002549 ORTHO05D002755 1.0e-08 63.5 118 44.1
Sed0003846 Sechium edule HOM05D002549 ORTHO05D002755 1.0e-08 63.5 104 42.3
CSS0010325 Camellia sinensis var. sinensis HOM05D002549 ORTHO05D002755 1.4e-08 63.2 114 37.7
CSS0036416 Camellia sinensis var. sinensis HOM05D002549 ORTHO05D002755 1.4e-08 63.2 114 37.7
Haze_16521 Corylus avellana HOM05D002549 ORTHO05D002755 1.4e-08 63.2 109 40.4
Oeu015240.1 Olea europaea HOM05D002549 ORTHO05D002755 1.4e-08 63.2 96 41.7
QL05p027977 Quercus lobata HOM05D002549 ORTHO05D002755 1.4e-08 63.2 120 37.5
Gohir.A07G034900 Gossypium hirsutum HOM05D002549 ORTHO05D002755 1.8e-08 62.8 99 47.5
Potri.001G172100 Populus trichocarpa HOM05D002549 ORTHO05D002755 2.3e-08 62.4 117 38.5
Atru.chr7.1209 Acer truncatum HOM05D002549 ORTHO05D002755 3.0e-08 62.0 111 45.0
MSTRG.22728 Avicennia marina HOM05D002549 ORTHO05D002755 3.0e-08 62.0 114 37.7
Manes.14G130728 Manihot esculenta HOM05D002549 ORTHO05D002755 3.0e-08 62.0 89 51.7
PGR031G0796 Punica granatum HOM05D002549 ORTHO05D002755 4.0e-08 61.6 102 43.1
TWI75G0818 Tripterygium wilfordii HOM05D002549 ORTHO05D002755 4.0e-08 61.6 115 35.7
TAR626G1731 Trochodendron aralioides HOM05D002549 ORTHO05D002755 4.0e-08 61.6 107 38.3
Manes.04G115900 Manihot esculenta HOM05D002549 ORTHO05D002755 5.2e-08 61.2 108 38.0
Psat7g255880 Pisum sativum HOM05D002549 ORTHO05D002755 5.2e-08 61.2 113 40.7
RcHm_v2.0_Chr2g0089091 Rosa chinensis HOM05D002549 ORTHO05D002755 5.2e-08 61.2 106 41.5
Glyma.13G364000 Glycine max HOM05D002549 ORTHO05D002755 8.8e-08 60.5 111 38.7
Gohir.A06G057200 Gossypium hirsutum HOM05D002549 ORTHO05D002755 8.8e-08 60.5 93 48.4
Gorai.011G081600 Gossypium raimondii HOM05D002549 ORTHO05D002755 8.8e-08 60.5 127 35.4
AUR62033481 Chenopodium quinoa HOM05D002549 ORTHO05D002755 1.1e-07 60.1 88 43.2
Ciclev10010562m.g Citrus clementina HOM05D002549 ORTHO05D002755 1.1e-07 60.1 92 45.7
Gohir.D05G126500 Gossypium hirsutum HOM05D002549 ORTHO05D002755 1.5e-07 59.7 126 38.1
Gohir.D06G055500 Gossypium hirsutum HOM05D002549 ORTHO05D002755 1.5e-07 59.7 90 42.2
Gorai.010G064800 Gossypium raimondii HOM05D002549 ORTHO05D002755 1.5e-07 59.7 90 42.2
MBI01_g37816_MAGBIO Magnolia biondii HOM05D002549 ORTHO05D002755 1.5e-07 59.7 93 39.8
SGA_v2.0_scaffold5G02666 Striga asiatica HOM05D002549 ORTHO05D002755 1.5e-07 59.7 124 39.5
TWI12G0179 Tripterygium wilfordii HOM05D002549 ORTHO05D002755 1.5e-07 59.7 118 39.8
Ah.09g225880 Amaranthus hybridus HOM05D002549 ORTHO05D002755 2.0e-07 59.3 107 40.2
Gohir.A10G075800 Gossypium hirsutum HOM05D002549 ORTHO05D002755 2.0e-07 59.3 127 33.9
Gohir.D10G075600 Gossypium hirsutum HOM05D002549 ORTHO05D002755 2.0e-07 59.3 127 33.9
Gorai.009G130500 Gossypium raimondii HOM05D002549 ORTHO05D002755 2.0e-07 59.3 126 38.1
Gohir.A05G125500 Gossypium hirsutum HOM05D002549 ORTHO05D002755 2.6e-07 58.9 126 38.1
Hma1.2p1_0515F.1_g170200 Hydrangea macrophylla HOM05D002549 ORTHO05D002755 2.6e-07 58.9 119 37.8
SGA_v2.0_scaffold37G14785 Striga asiatica HOM05D002549 ORTHO05D002755 2.6e-07 58.9 103 38.8
CiPaw.03G242300 Carya illinoinensis HOM05D002549 ORTHO05D002755 3.3e-07 58.5 115 41.7
Lalb_Chr13g0301951 Lupinus albus HOM05D002549 ORTHO05D002755 3.3e-07 58.5 109 40.4
Glyma.13G168400 Glycine max HOM05D002549 ORTHO05D002755 4.4e-07 58.2 101 39.6
TWI18G0054 Tripterygium wilfordii HOM05D002549 ORTHO05D002755 4.4e-07 58.2 113 37.2
CANSAT56G3753 Cannabis sativa HOM05D002549 ORTHO05D002755 5.7e-07 57.8 117 35.9
Lalb_Chr25g0279471 Lupinus albus HOM05D002549 ORTHO05D002755 5.7e-07 57.8 114 37.7
THA.LOC104812501 Tarenaya hassleriana HOM05D002549 ORTHO05D002755 5.7e-07 57.8 137 35.8
Thecc.09G123500 Theobroma cacao HOM05D002549 ORTHO05D002755 5.7e-07 57.8 100 45.0
Cc04_g04130 Coffea canephora HOM05D002549 ORTHO05D002755 7.5e-07 57.4 148 35.8
Medtr4g114050 Medicago truncatula HOM05D002549 ORTHO05D002755 7.5e-07 57.4 110 46.4
Oeu052277.1 Olea europaea HOM05D002549 ORTHO05D002755 7.5e-07 57.4 120 37.5
Solyc03g116490.1 Solanum lycopersicum HOM05D002549 ORTHO05D002755 7.5e-07 57.4 121 38.8
Duzib150G0928 Durio zibethinus HOM05D002549 ORTHO05D002755 9.7e-07 57.0 95 43.2
Duzib160G0907 Durio zibethinus HOM05D002549 ORTHO05D002755 9.7e-07 57.0 131 35.9
VMungo0331G1840 Vigna mungo HOM05D002549 ORTHO05D002755 9.7e-07 57.0 110 40.0
CANSAT11G2695 Cannabis sativa HOM05D002549 ORTHO05D002755 1.3e-06 56.6 115 38.3
COL.COLO4_12915 Corchorus olitorius HOM05D002549 ORTHO05D002755 1.3e-06 56.6 137 32.8
TPR.G10706 Trifolium pratense HOM05D002549 ORTHO05D002755 1.3e-06 56.6 103 42.7
Rhsim12G0192900 Rhododendron simsii HOM05D002549 ORTHO05D002755 1.7e-06 56.2 123 39.0
Zm00001eb155470 Zea mays HOM05D002549 ORTHO05D002755 2.2e-06 55.8 100 39.0
Actinidia08809 Actinidia chinensis HOM05D002549 ORTHO05D002755 2.8e-06 55.5 102 39.2
Ciclev10009953m.g Citrus clementina HOM05D002549 ORTHO05D002755 2.8e-06 55.5 100 43.0
FAN26G2275 Fragaria x ananassa HOM05D002549 ORTHO05D002755 2.8e-06 55.5 107 39.3
Phvul.010G154100 Phaseolus vulgaris HOM05D002549 ORTHO05D002755 2.8e-06 55.5 103 38.8
Dinv38101 Davidia involucrata HOM05D002549 ORTHO05D002755 3.7e-06 55.1 117 37.6
Eucgr.C04182 Eucalyptus grandis HOM05D002549 ORTHO05D002755 3.7e-06 55.1 115 38.3
Sopen03g035380 Solanum pennellii HOM05D002549 ORTHO05D002755 3.7e-06 55.1 121 38.0
TPR.G8449 Trifolium pratense HOM05D002549 ORTHO05D002755 3.7e-06 55.1 115 36.5
VMungo1080G1223 Vigna mungo HOM05D002549 ORTHO05D002755 3.7e-06 55.1 115 38.3
CAN.G407.104 Capsicum annuum HOM05D002549 ORTHO05D002755 4.8e-06 54.7 121 35.5
Hma1.2p1_0007F.1_g005060 Hydrangea macrophylla HOM05D002549 ORTHO05D002755 4.8e-06 54.7 90 40.0
PGSC0003DMG400000607 Solanum tuberosum HOM05D002549 ORTHO05D002755 4.8e-06 54.7 119 37.0
Thhalv10015056m.g Eutrema salsugineum HOM05D002549 ORTHO05D002755 6.3e-06 54.3 110 38.2
FAN19G0542 Fragaria x ananassa HOM05D002549 ORTHO05D002755 6.3e-06 54.3 112 38.4
FAN28G0195 Fragaria x ananassa HOM05D002549 ORTHO05D002755 6.3e-06 54.3 112 38.4
Nitab4.5_0007260g0050 Nicotiana tabacum HOM05D002549 ORTHO05D002755 6.3e-06 54.3 77 46.8
PGR102G2540 Punica granatum HOM05D002549 ORTHO05D002755 6.3e-06 54.3 121 34.7


User provided reference genes

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