Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 1.6e-118 429.5 219 100.0
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 2.3e-109 399.1 219 95.4
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 1.7e-77 293.1 219 69.4
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 1.1e-55 220.7 220 53.6
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 8.2e-51 204.5 215 53.5
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 2.2e-48 196.4 231 49.8
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 4.2e-47 192.2 224 48.7
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 6.1e-46 188.3 224 47.8
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 1.0e-45 187.6 221 49.3
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 3.0e-45 186.0 212 48.1
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 5.1e-45 185.3 215 46.5
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 1.5e-44 183.7 212 48.1
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 5.7e-44 181.8 218 48.2
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 7.4e-44 181.4 220 46.8
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 9.7e-44 181.0 214 47.7
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 9.7e-44 181.0 218 48.6
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 1.3e-43 180.6 219 47.5
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 1.3e-43 180.6 223 46.6
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 1.3e-43 180.6 213 46.9
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 1.7e-43 180.3 213 48.4
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 2.2e-43 179.9 215 47.0
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 2.2e-43 179.9 213 47.4
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 2.8e-43 179.5 217 47.0
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 3.7e-43 179.1 213 47.4
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 8.2e-43 177.9 218 48.2
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 1.1e-42 177.6 215 47.0
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 1.8e-42 176.8 214 46.7
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 1.8e-42 176.8 219 45.7
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 2.4e-42 176.4 215 48.8
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 2.4e-42 176.4 214 48.6
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 4.1e-42 175.6 178 53.4
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 5.3e-42 175.3 223 45.3
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 5.3e-42 175.3 219 45.7
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 6.9e-42 174.9 225 47.6
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 1.2e-41 174.1 215 46.5
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 2.0e-41 173.3 225 47.1
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 2.0e-41 173.3 219 46.1
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 3.4e-41 172.6 217 45.6
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 4.5e-41 172.2 214 45.3
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 5.9e-41 171.8 220 46.4
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 5.9e-41 171.8 219 47.9
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 7.7e-41 171.4 220 44.1
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 1.0e-40 171.0 173 52.0
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.0e-40 171.0 173 52.0
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 1.0e-40 171.0 215 45.6
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.0e-40 171.0 213 45.5
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 1.3e-40 170.6 219 45.7
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 1.7e-40 170.2 225 48.0
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 2.9e-40 169.5 215 47.0
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 5.0e-40 168.7 217 46.5
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 6.5e-40 168.3 215 47.0
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 6.5e-40 168.3 173 52.6
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 1.1e-39 167.5 207 46.9
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 1.4e-39 167.2 223 45.7
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 1.9e-39 166.8 217 46.1
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 2.5e-39 166.4 171 53.8
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 3.2e-39 166.0 219 46.1
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 5.5e-39 165.2 224 45.5
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 5.5e-39 165.2 213 43.7
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 7.2e-39 164.9 223 44.8
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 9.4e-39 164.5 222 44.6
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 2.7e-38 162.9 191 48.7
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 6.1e-38 161.8 220 43.6
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 7.9e-38 161.4 178 50.0
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 1.0e-37 161.0 217 46.5
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 2.3e-37 159.8 218 42.7
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 3.0e-37 159.5 220 43.2
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 6.7e-37 158.3 220 42.7
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 8.8e-37 157.9 225 44.0
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.1e-36 157.5 176 47.2
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 1.5e-36 157.1 224 44.2
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 7.4e-36 154.8 223 43.9
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 9.7e-36 154.5 223 43.0
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.7e-35 153.7 219 41.6
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 8.2e-35 151.4 221 43.9
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 3.1e-34 149.4 220 42.3
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 5.3e-34 148.7 162 49.4
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 2.0e-33 146.7 216 41.2
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 2.6e-33 146.4 136 58.1
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 4.5e-33 145.6 218 41.7
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 5.9e-33 145.2 218 41.7
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 7.7e-33 144.8 199 44.7
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 7.7e-33 144.8 176 47.2
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 2.9e-32 142.9 304 34.5
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 2.7e-30 136.3 173 46.8
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 6.1e-30 135.2 221 38.9
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 6.1e-30 135.2 210 42.9
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 1.0e-29 134.4 213 41.3
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 2.3e-29 133.3 173 42.8
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 2.3e-29 133.3 190 41.1
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 3.0e-29 132.9 221 40.3
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 6.7e-29 131.7 217 39.6
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 6.7e-29 131.7 191 40.3
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 1.5e-28 130.6 216 39.4
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 1.7e-27 127.1 137 49.6
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 3.7e-27 125.9 111 56.8
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 3.7e-27 125.9 162 44.4
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 4.8e-27 125.6 138 47.8
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 8.2e-27 124.8 213 37.1
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 1.1e-26 124.4 138 47.8
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 1.4e-26 124.0 113 56.6
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 1.8e-26 123.6 144 48.6
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 4.1e-26 122.5 222 36.9
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 5.3e-26 122.1 162 43.8
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 5.3e-26 122.1 173 42.2
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 2.7e-25 119.8 212 36.8
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 7.7e-25 118.2 171 43.9
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 1.0e-24 117.9 183 41.0
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 1.3e-24 117.5 141 46.8
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 1.3e-24 117.5 192 38.0
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 1.7e-24 117.1 217 36.4
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 5.0e-24 115.5 209 37.3
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 5.0e-24 115.5 141 41.8
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 6.5e-24 115.2 193 36.3
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 6.5e-24 115.2 81 65.4
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 6.5e-24 115.2 126 46.8
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 8.5e-24 114.8 177 39.5
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 8.5e-24 114.8 135 45.9
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 8.5e-24 114.8 123 44.7
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 8.5e-24 114.8 142 43.0
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 1.1e-23 114.4 170 39.4
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 1.5e-23 114.0 209 36.4
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 1.9e-23 113.6 135 45.9
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 3.2e-23 112.8 114 48.2
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 3.2e-23 112.8 200 34.5
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 5.5e-23 112.1 170 40.0
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 7.2e-23 111.7 81 64.2
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 1.2e-22 110.9 194 37.1
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.6e-22 110.5 129 48.1
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 2.1e-22 110.2 176 39.8
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 4.7e-22 109.0 131 45.8
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 8.0e-22 108.2 171 36.8
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 1.0e-21 107.8 171 36.8
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 1.4e-21 107.5 161 41.6
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 1.8e-21 107.1 151 43.0
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 8.8e-21 104.8 143 44.1
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 1.5e-20 104.0 112 47.3
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 7.5e-20 101.7 120 47.5
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 2.4e-18 96.7 176 34.7
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 4.1e-18 95.9 146 43.2
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 7.0e-18 95.1 79 62.0
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 4.5e-17 92.4 75 58.7
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 5.9e-17 92.0 125 38.4
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 1.7e-16 90.5 154 35.1
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 5.0e-16 89.0 179 34.6
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 4.2e-15 85.9 200 32.5
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 1.6e-14 84.0 123 39.0
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 3.6e-14 82.8 105 40.0
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 1.8e-13 80.5 63 57.1
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.5e-12 77.4 118 37.3
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.3e-11 74.3 132 40.9
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 2.4e-10 70.1 134 34.3
FvH4_3g19550 Fragaria vesca HOM05D004603 ORTHO05D005244 4.1e-10 69.3 87 44.8
Dinv31495 Davidia involucrata HOM05D004603 ORTHO05D005244 5.4e-10 68.9 73 47.9
FAN11G0237 Fragaria x ananassa HOM05D004603 ORTHO05D005244 5.4e-10 68.9 87 44.8
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 1.6e-09 67.4 112 35.7
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 2.0e-09 67.0 89 43.8
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 4.5e-09 65.9 79 43.0
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 4.5e-09 65.9 176 32.4
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 1.0e-08 64.7 39 71.8
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 5.0e-08 62.4 86 36.0
Nn3g18490 Nelumbo nucifera HOM05D051960 ORTHO05D005244 2.1e-06 57.0 79 36.7
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 4.7e-06 55.8 103 36.9


User provided reference genes

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