Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009091 Daucus carota HOM05D005060 ORTHO05D005975 8.9e-57 223.8 149 100.0
TAR369G0553 Trochodendron aralioides HOM05D005060 ORTHO05D005975 8.4e-23 110.9 149 65.1
CAN.G128.101 Capsicum annuum HOM05D005060 ORTHO05D005975 1.4e-22 110.2 149 53.7
PSO339G2385 Papaver somniferum HOM05D005060 ORTHO05D005975 1.9e-22 109.8 150 58.7
Solyc10g081100.3 Solanum lycopersicum HOM05D005060 ORTHO05D005975 1.6e-21 106.7 153 55.6
Sopen10g031600 Solanum pennellii HOM05D005060 ORTHO05D005975 1.6e-21 106.7 153 55.6
Oeu023007.1 Olea europaea HOM05D005060 ORTHO05D005975 1.0e-20 104.0 153 62.1
Nitab4.5_0003286g0020 Nicotiana tabacum HOM05D005060 ORTHO05D005975 1.3e-20 103.6 149 48.3
PGSC0003DMG400028107 Solanum tuberosum HOM05D005060 ORTHO05D005975 2.3e-20 102.8 153 54.2
Nitab4.5_0000062g0300 Nicotiana tabacum HOM05D005060 ORTHO05D005975 3.9e-20 102.1 149 58.4
PSO384G0259 Papaver somniferum HOM05D005060 ORTHO05D005975 4.3e-19 98.6 150 56.7
GSVIVG01025849001 Vitis vinifera HOM05D005060 ORTHO05D005975 1.3e-18 97.1 125 63.2
Peaxi162Scf00153g01321 Petunia axillaris HOM05D005060 ORTHO05D005975 1.6e-18 96.7 149 59.1
MSTRG.6293 Avicennia marina HOM05D005060 ORTHO05D005975 1.1e-17 94.0 144 62.5
Cc06_g22810 Coffea canephora HOM05D005060 ORTHO05D005975 1.4e-17 93.6 138 64.5
Migut.J01559 Erythranthe guttata HOM05D005060 ORTHO05D005975 2.4e-17 92.8 149 55.7
Ciclev10013047m.g Citrus clementina HOM05D005060 ORTHO05D005975 3.1e-17 92.4 148 57.4
Lj1C23T21 Lonicera japonica HOM05D005060 ORTHO05D005975 6.9e-17 91.3 117 53.8
Rhsim04G0118500 Rhododendron simsii HOM05D005060 ORTHO05D005975 2.6e-16 89.4 150 43.3
Aqoxy1G00045 Aquilegia oxysepala HOM05D005060 ORTHO05D005975 4.5e-16 88.6 141 59.6
Hma1.2p1_0031F.1_g018400 Hydrangea macrophylla HOM05D005060 ORTHO05D005975 3.8e-15 85.5 144 59.0
Hma1.2p1_2089F.1_g313840 Hydrangea macrophylla HOM05D005060 ORTHO05D005975 3.8e-15 85.5 144 59.0
Nn7g37114 Nelumbo nucifera HOM05D005060 ORTHO05D005975 4.9e-15 85.1 147 55.1
SGA_v2.0_scaffold69G23194 Striga asiatica HOM05D005060 ORTHO05D005975 1.1e-14 84.0 102 67.6
ECA236G1981 Erigeron canadensis HOM05D005060 ORTHO05D005975 3.2e-14 82.4 141 56.0
Actinidia24546 Actinidia chinensis HOM05D005060 ORTHO05D005975 7.1e-14 81.3 108 66.7
Cpa.g.sc33.199 Carica papaya HOM05D005060 ORTHO05D005975 7.1e-14 81.3 151 53.0
ClCG04G005980 Citrullus lanatus HOM05D005060 ORTHO05D005975 1.2e-13 80.5 142 43.0
MBI19_g25016_MAGBIO Magnolia biondii HOM05D005060 ORTHO05D005975 1.2e-13 80.5 142 56.3
Atru.chr1.1520 Acer truncatum HOM05D005060 ORTHO05D005975 1.3e-12 77.0 155 48.4
Potri.016G027600 Populus trichocarpa HOM05D005060 ORTHO05D005975 1.3e-12 77.0 143 44.1
TWI53G1989 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 2.3e-12 76.3 137 51.8
Haze_20306 Corylus avellana HOM05D005060 ORTHO05D005975 3.0e-12 75.9 133 45.1
MELO3C019148.2 Cucumis melo HOM05D005060 ORTHO05D005975 3.0e-12 75.9 127 41.7
Cfa019938 Carpinus fangiana HOM05D005060 ORTHO05D005975 5.1e-12 75.1 109 50.5
CsaV3_4G029150 Cucumis sativus L. HOM05D005060 ORTHO05D005975 5.1e-12 75.1 136 41.2
SGA_v2.0_scaffold66G22311 Striga asiatica HOM05D005060 ORTHO05D005975 6.7e-12 74.7 153 43.8
Sabra16G0032200 Salix brachista HOM05D005060 ORTHO05D005975 8.7e-12 74.3 152 44.7
Nitab4.5_0001270g0130 Nicotiana tabacum HOM05D005060 ORTHO05D005975 1.1e-11 73.9 98 69.4
Sc13g0000780 Simmondsia chinensis HOM05D005060 ORTHO05D005975 1.1e-11 73.9 120 52.5
Lsat_1_v5_gn_8_109400 Lactuca sativa HOM05D005060 ORTHO05D005975 1.9e-11 73.2 154 40.9
PGSC0003DMG400007184 Solanum tuberosum HOM05D005060 ORTHO05D005975 1.9e-11 73.2 98 68.4
ATR0787G086 Amborella trichopoda HOM05D005060 ORTHO05D005975 2.5e-11 72.8 155 54.8
Cpa.g.sc33.198 Carica papaya HOM05D005060 ORTHO05D005975 5.6e-11 71.6 140 55.7
Lj1g0025022 Lotus japonicus HOM05D005060 ORTHO05D005975 7.4e-11 71.2 153 39.9
vmacro08973 Vaccinium macrocarpon HOM05D005060 ORTHO05D005975 7.4e-11 71.2 148 39.9
Sabra16G0031900 Salix brachista HOM05D005060 ORTHO05D005975 9.6e-11 70.9 118 48.3
CSS0016899 Camellia sinensis var. sinensis HOM05D005060 ORTHO05D005975 2.1e-10 69.7 145 53.1
Eucgr.A02181 Eucalyptus grandis HOM05D005060 ORTHO05D005975 2.1e-10 69.7 140 52.1
TWI74G0004 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 2.1e-10 69.7 150 51.3
Prupe.2G065900 Prunus persica HOM05D005060 ORTHO05D005975 2.8e-10 69.3 156 47.4
Sopen10g028770 Solanum pennellii HOM05D005060 ORTHO05D005975 2.8e-10 69.3 150 54.0
CDE02G1443 Ceratophyllum demersum HOM05D005060 ORTHO05D005975 6.2e-10 68.2 141 57.4
RcHm_v2.0_Chr1g0331611 Rosa chinensis HOM05D005060 ORTHO05D005975 6.2e-10 68.2 96 53.1
CAN.G959.26 Capsicum annuum HOM05D005060 ORTHO05D005975 1.1e-09 67.4 146 52.1
FAN03G0591 Fragaria x ananassa HOM05D005060 ORTHO05D005975 1.1e-09 67.4 105 50.5
PGR042G1122 Punica granatum HOM05D005060 ORTHO05D005975 1.8e-09 66.6 86 59.3
Sed0011991 Sechium edule HOM05D005060 ORTHO05D005975 1.8e-09 66.6 153 39.9
unitig_21.g20673 Utricularia gibba HOM05D005060 ORTHO05D005975 1.8e-09 66.6 146 39.0
Gohir.A01G192800 Gossypium hirsutum HOM05D005060 ORTHO05D005975 3.1e-09 65.9 152 46.1
MD07G1060800 Malus domestica HOM05D005060 ORTHO05D005975 3.1e-09 65.9 160 42.5
HanXRQChr05g0130501 Helianthus annuus HOM05D005060 ORTHO05D005975 4.0e-09 65.5 155 45.2
CDE04G0407 Ceratophyllum demersum HOM05D005060 ORTHO05D005975 5.3e-09 65.1 141 54.6
Manes.13G072000 Manihot esculenta HOM05D005060 ORTHO05D005975 5.3e-09 65.1 150 50.0
Solyc10g077090.2 Solanum lycopersicum HOM05D005060 ORTHO05D005975 9.0e-09 64.3 150 53.3
Ah.04g150220 Amaranthus hybridus HOM05D005060 ORTHO05D005975 1.2e-08 63.9 95 54.7
Lalb_Chr24g0400621 Lupinus albus HOM05D005060 ORTHO05D005975 1.2e-08 63.9 158 36.7
Hund24512 Selenicereus undatus HOM05D005060 ORTHO05D005975 1.5e-08 63.5 134 53.0
Duzib128G1851 Durio zibethinus HOM05D005060 ORTHO05D005975 2.0e-08 63.2 152 53.3
Medtr7g088520 Medicago truncatula HOM05D005060 ORTHO05D005975 2.6e-08 62.8 139 39.6
Gohir.D01G177000 Gossypium hirsutum HOM05D005060 ORTHO05D005975 3.4e-08 62.4 155 46.5
Gorai.002G226200 Gossypium raimondii HOM05D005060 ORTHO05D005975 3.4e-08 62.4 155 46.5
FAN01G1650 Fragaria x ananassa HOM05D005060 ORTHO05D005975 4.5e-08 62.0 150 43.3
Lalb_Chr22g0358011 Lupinus albus HOM05D005060 ORTHO05D005975 5.8e-08 61.6 160 37.5
TPR.G27972 Trifolium pratense HOM05D005060 ORTHO05D005975 5.8e-08 61.6 151 39.7
AT3G56910 Arabidopsis thaliana HOM05D005060 ORTHO05D005975 7.6e-08 61.2 153 42.5
Gohir.A13G001200 Gossypium hirsutum HOM05D005060 ORTHO05D005975 7.6e-08 61.2 150 38.0
Ca_08351_v3 Cicer arietinum L. HOM05D005060 ORTHO05D005975 9.9e-08 60.8 150 36.0
Ciclev10013042m.g Citrus clementina HOM05D005060 ORTHO05D005975 1.3e-07 60.5 149 47.7
CiPaw.10G123900 Carya illinoinensis HOM05D005060 ORTHO05D005975 1.7e-07 60.1 95 64.2
Manes.08G066600 Manihot esculenta HOM05D005060 ORTHO05D005975 1.7e-07 60.1 150 43.3
TWI74G0567 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 1.7e-07 60.1 159 50.9
FAN10G4368 Fragaria x ananassa HOM05D002241 ORTHO05D002458 3.8e-07 58.9 149 43.0
MD02G1260500 Malus domestica HOM05D005060 ORTHO05D005975 3.8e-07 58.9 159 41.5
AUR62020993 Chenopodium quinoa HOM05D005060 ORTHO05D005975 4.9e-07 58.5 95 62.1
EL10Ac3g07347 Beta vulgaris HOM05D005060 ORTHO05D005975 6.4e-07 58.2 93 58.1
FvH4_7g05170 Fragaria vesca HOM05D005060 ORTHO05D005975 6.4e-07 58.2 105 47.6
FAN06G0894 Fragaria x ananassa HOM05D005060 ORTHO05D005975 6.4e-07 58.2 105 47.6
Os01g0278900 Oryza sativa ssp. japonica HOM05D005060 ORTHO05D005975 6.4e-07 58.2 158 35.4
HPP92_011298 Vanilla planifolia HOM05D065872 ORTHO05D005975 6.4e-07 58.2 93 66.7
Carub.0005s2365 Capsella rubella HOM05D005060 ORTHO05D005975 8.4e-07 57.8 155 47.1
Duzib093G0151 Durio zibethinus HOM05D005060 ORTHO05D005975 8.4e-07 57.8 150 41.3
Ah.13g077380 Amaranthus hybridus HOM05D005060 ORTHO05D005975 2.4e-06 56.2 148 43.2
CANSAT78G0005 Cannabis sativa HOM05D005060 ORTHO05D005975 3.2e-06 55.8 153 49.0
AL5G38310 Arabidopsis lyrata HOM05D005060 ORTHO05D005975 5.5e-06 55.1 154 44.8
Lalb_Chr14g0365381 Lupinus albus HOM05D005060 ORTHO05D005975 7.1e-06 54.7 158 34.8
Psat0s2745g0280 Pisum sativum HOM05D005060 ORTHO05D005975 9.3e-06 54.3 153 36.6
Thecc.05G132800 Theobroma cacao HOM05D005060 ORTHO05D005975 9.3e-06 54.3 151 41.7


User provided reference genes

Program Settings