Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 0.0e+00 1322.0 662 100.0
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 2.4e-223 779.2 660 61.4
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 2.8e-211 739.2 642 61.8
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 8.1e-203 711.1 653 58.3
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 2.9e-200 702.6 642 58.6
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 1.1e-199 700.7 654 57.0
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 1.4e-199 700.3 651 56.7
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 1.4e-199 700.3 647 59.2
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 3.9e-197 692.2 654 57.8
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 1.6e-195 686.8 649 57.6
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 2.1e-195 686.4 668 57.6
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 3.7e-195 685.6 662 56.6
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 2.6e-193 679.5 644 57.5
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 2.2e-192 676.4 657 55.4
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 2.5e-191 672.9 662 56.3
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 4.2e-191 672.2 637 56.4
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 1.2e-190 670.6 639 56.0
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.6e-190 670.2 662 54.5
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 2.7e-190 669.5 654 56.0
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 1.8e-189 666.8 658 54.9
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 2.3e-189 666.4 643 56.1
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 2.3e-189 666.4 652 55.2
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 2.3e-189 666.4 642 56.5
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 3.9e-189 665.6 647 56.1
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 5.1e-189 665.2 646 56.2
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 4.3e-188 662.1 637 55.9
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 4.3e-188 662.1 646 55.7
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 1.2e-185 654.1 649 55.8
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 3.4e-185 652.5 643 55.5
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 1.0e-184 651.0 654 55.8
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 2.9e-184 649.4 640 55.3
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 3.8e-184 649.0 644 55.9
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 4.2e-183 645.6 632 55.7
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 5.5e-183 645.2 655 54.8
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 7.2e-183 644.8 663 53.7
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 1.2e-182 644.0 636 55.3
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 1.6e-182 643.7 646 55.3
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 2.7e-182 642.9 634 53.5
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 3.6e-182 642.5 658 54.1
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 7.9e-182 641.3 641 54.9
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 1.0e-181 641.0 647 52.7
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 1.4e-181 640.6 643 54.4
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 8.8e-181 637.9 647 55.8
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 9.7e-180 634.4 646 54.5
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 3.7e-179 632.5 636 54.6
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 6.9e-178 628.2 651 53.5
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 6.9e-178 628.2 626 55.9
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 2.0e-177 626.7 660 52.1
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 2.6e-177 626.3 675 51.3
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 3.4e-177 625.9 638 51.4
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 4.5e-177 625.5 661 52.2
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 2.2e-176 623.2 518 60.4
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 3.2e-175 619.4 633 51.5
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 5.5e-175 618.6 633 52.0
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 9.4e-175 617.8 651 51.9
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 7.9e-174 614.8 637 52.1
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 1.4e-173 614.0 641 51.6
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 2.3e-173 613.2 631 51.2
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.3e-173 613.2 631 51.2
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 3.0e-173 612.8 635 52.1
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 5.1e-173 612.1 636 53.9
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 8.8e-173 611.3 649 54.5
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 2.0e-172 610.1 639 51.5
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 3.3e-172 609.4 639 51.2
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 3.3e-172 609.4 640 51.9
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 1.7e-171 607.1 635 51.3
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 2.2e-171 606.7 630 51.3
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 4.8e-171 605.5 721 49.7
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 6.3e-171 605.1 633 51.3
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 8.2e-171 604.7 635 53.7
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 1.8e-170 603.6 632 51.4
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 2.4e-170 603.2 635 53.5
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 7.0e-170 601.7 653 50.8
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 7.0e-170 601.7 628 53.2
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 9.1e-170 601.3 642 53.9
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 2.0e-169 600.1 632 50.6
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 2.6e-169 599.7 653 51.5
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 9.4e-167 591.3 654 50.9
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 1.2e-166 590.9 656 51.4
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 5.3e-162 575.5 655 48.4
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 6.1e-150 535.4 641 48.8
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 8.8e-149 531.6 665 46.5
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 2.0e-148 530.4 442 61.1
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 2.2e-147 526.9 465 57.0
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 1.3e-144 517.7 648 45.7
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 1.2e-142 511.1 449 57.7
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.1e-142 510.4 638 48.6
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 2.9e-136 490.0 428 59.1
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 9.5e-135 485.0 397 62.5
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 8.0e-134 481.9 625 43.7
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 4.0e-133 479.6 434 57.8
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 3.4e-132 476.5 395 59.2
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 9.8e-132 474.9 878 36.2
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 8.6e-128 461.8 639 44.3
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 1.2e-124 451.4 633 43.4
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 1.8e-117 427.6 658 38.9
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 7.1e-114 415.6 475 48.2
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 2.7e-105 387.1 471 46.5
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 1.8e-101 374.4 479 43.2
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 2.4e-101 374.0 479 48.0
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.8e-100 369.4 273 67.0
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 1.9e-98 364.4 218 79.4
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 1.0e-96 358.6 477 47.0
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 1.5e-92 344.7 687 37.1
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 2.7e-89 334.0 637 35.5
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 1.9e-87 327.8 646 36.8
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.2e-84 318.5 465 41.9
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 9.3e-82 308.9 195 73.8
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 9.3e-82 308.9 195 73.8
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 7.4e-79 299.3 196 69.4
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 8.2e-78 295.8 466 44.0
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.9e-77 292.7 418 44.0
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 1.5e-71 275.0 529 33.5
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 5.7e-71 273.1 401 43.1
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 2.2e-70 271.2 195 66.7
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.4e-68 263.8 167 71.9
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 3.0e-64 250.8 185 65.9
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 5.7e-63 246.5 324 44.8
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 1.3e-62 245.4 751 27.7
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.4e-61 241.1 236 55.1
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 6.9e-61 239.6 233 56.2
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 4.5e-60 236.9 228 53.9
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.1e-58 232.3 235 51.1
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 4.7e-57 226.9 144 75.7
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 4.8e-54 216.9 487 30.4
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 3.5e-52 210.7 166 61.4
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.2e-44 185.7 187 46.5
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 1.0e-43 182.6 438 30.6
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 4.7e-41 173.7 263 41.8
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 5.7e-39 166.8 137 53.3
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.0e-35 156.0 244 42.6
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.0e-35 153.7 137 56.2
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 4.7e-33 147.1 131 56.5
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 1.1e-29 136.0 76 85.5
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 4.0e-24 117.5 78 76.9
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 6.8e-24 116.7 173 46.2
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 2.0e-23 115.2 173 45.7
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 9.8e-23 112.8 149 43.0
BcaB01g04944 Brassica carinata HOM05D004183 ORTHO05D005022 8.3e-22 109.8 189 40.2
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.0e-20 105.1 82 63.4
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 9.5e-18 96.3 425 23.5
SEGI_41292 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.3e-16 91.7 204 34.3
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 3.4e-15 87.8 78 52.6
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 3.5e-12 77.8 135 39.3
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 4.6e-12 77.4 75 44.0
BcaC08g45519 Brassica carinata HOM05D004183 ORTHO05D005022 2.8e-09 68.2 108 35.2
Psat5g100440 Pisum sativum HOM05D004183 ORTHO05D005022 2.8e-09 68.2 145 37.2
Hma1.2p1_0197F.1_g085110 Hydrangea macrophylla HOM05D004183 ORTHO05D008470 3.6e-09 67.8 45 68.9


User provided reference genes

Program Settings