Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 2.3e-240 835.1 412 100.0
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 2.3e-131 473.0 373 65.7
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 3.7e-129 465.7 448 55.6
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 7.7e-127 458.0 428 57.0
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 1.6e-124 450.3 437 57.2
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.8e-123 446.8 449 54.6
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 4.4e-122 442.2 332 66.0
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 5.7e-122 441.8 345 65.8
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 1.4e-120 437.2 439 55.1
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 1.8e-120 436.8 433 54.0
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 1.8e-120 436.8 411 56.9
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 7.0e-120 434.9 336 64.6
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 7.0e-120 434.9 376 58.2
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 3.5e-119 432.6 338 65.1
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 4.5e-119 432.2 344 64.5
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 4.5e-119 432.2 344 64.5
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 1.3e-118 430.6 337 65.0
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 1.7e-118 430.3 334 64.4
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 1.7e-118 430.3 340 64.4
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 3.8e-118 429.1 357 59.9
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 5.0e-118 428.7 356 59.8
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 6.6e-118 428.3 343 63.3
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 2.5e-117 426.4 356 59.0
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 7.2e-117 424.9 370 61.1
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 2.8e-116 422.9 344 62.8
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 2.8e-116 422.9 344 62.8
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 4.7e-116 422.2 344 62.8
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 4.7e-116 422.2 336 64.6
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 4.7e-116 422.2 331 65.3
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 1.4e-115 420.6 428 53.7
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 2.3e-115 419.9 335 64.2
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 3.0e-115 419.5 428 55.4
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 4.0e-115 419.1 368 57.9
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 6.8e-115 418.3 336 62.5
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 1.2e-114 417.5 399 57.4
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 1.2e-114 417.5 381 58.3
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 1.5e-114 417.2 333 61.3
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 1.5e-114 417.2 336 62.2
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 3.4e-114 416.0 346 61.6
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 9.8e-114 414.5 341 62.2
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 3.7e-113 412.5 339 62.2
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 1.1e-112 411.0 336 63.1
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 1.1e-112 411.0 324 66.0
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 1.8e-112 410.2 329 64.7
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 3.2e-112 409.5 340 63.2
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 2.7e-111 406.4 338 62.4
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 1.7e-110 403.7 341 61.9
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 3.9e-110 402.5 330 62.1
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 5.0e-110 402.1 324 64.8
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 8.6e-110 401.4 350 61.4
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 1.5e-109 400.6 328 63.4
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.9e-109 400.2 327 60.6
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.5e-109 399.8 333 59.5
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 2.5e-109 399.8 345 60.0
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 3.3e-109 399.4 338 60.9
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 3.3e-109 399.4 338 60.9
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 3.3e-109 399.4 337 62.0
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 5.6e-109 398.7 337 62.9
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 9.5e-109 397.9 340 60.3
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.1e-108 396.7 326 60.4
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 3.6e-108 396.0 340 61.2
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 2.3e-107 393.3 338 62.1
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 3.1e-107 392.9 438 51.1
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 8.9e-107 391.3 252 74.2
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 1.5e-106 390.6 343 59.5
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 2.6e-106 389.8 327 61.5
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 2.6e-106 389.8 324 62.7
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 4.4e-106 389.0 317 61.2
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 4.4e-106 389.0 366 57.1
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 4.9e-105 385.6 385 55.6
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 4.9e-105 385.6 349 58.7
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 3.2e-104 382.9 325 61.2
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 4.1e-104 382.5 360 56.4
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 3.5e-103 379.4 328 61.9
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 7.8e-103 378.3 246 75.2
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 1.3e-102 377.5 335 57.9
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 3.0e-102 376.3 355 57.5
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 5.0e-102 375.6 336 57.1
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 3.3e-101 372.9 325 58.8
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 1.6e-100 370.5 321 58.6
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 3.6e-100 369.4 343 58.3
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 1.2e-98 364.4 353 55.2
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 2.0e-98 363.6 330 57.0
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 9.8e-98 361.3 354 55.6
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 4.9e-97 359.0 339 58.1
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 4.1e-96 355.9 327 58.1
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 2.0e-90 337.0 380 51.1
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 2.6e-90 336.7 343 52.2
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 1.2e-87 327.8 325 53.2
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 4.6e-87 325.9 243 65.4
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 8.6e-86 321.6 327 54.1
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 1.2e-84 317.8 230 67.8
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 1.2e-82 311.2 327 54.4
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 2.0e-82 310.5 354 47.5
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 7.6e-82 308.5 317 53.3
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 2.7e-79 300.1 192 72.4
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 2.1e-76 290.4 306 51.3
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 4.4e-74 282.7 283 52.3
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 2.2e-73 280.4 273 56.0
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.4e-72 277.7 174 74.1
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 2.4e-67 260.4 271 50.2
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 9.9e-66 255.0 303 44.2
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 2.9e-65 253.4 335 48.1
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 5.6e-61 239.2 196 58.7
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 2.5e-56 223.8 123 81.3
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 9.3e-56 221.9 115 81.7
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 1.8e-54 217.6 231 48.5
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 1.2e-47 194.9 114 78.9
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 7.9e-47 192.2 303 40.3
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 3.3e-45 186.8 112 75.9
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 4.6e-39 166.4 192 50.0
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.0e-38 165.2 172 52.9
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 2.6e-37 160.6 183 50.8
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 4.1e-35 153.3 189 46.0
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 5.3e-35 152.9 268 38.1
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 3.2e-32 143.7 173 48.0
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 2.7e-31 140.6 195 39.5
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 5.3e-27 126.3 99 63.6
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.6e-26 124.8 145 49.0
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 3.5e-26 123.6 62 87.1
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 1.0e-22 112.1 100 60.0
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 2.0e-21 107.8 299 28.1
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 2.6e-21 107.5 73 71.2
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 3.3e-21 107.1 166 44.6
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 4.4e-21 106.7 56 78.6
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 1.2e-18 98.6 61 78.7
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 3.5e-18 97.1 63 76.2
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.9e-16 91.3 195 34.9
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 1.6e-15 88.2 78 57.7
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 8.8e-14 82.4 77 62.3
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 1.8e-11 74.7 159 36.5
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 1.3e-09 68.6 53 69.8
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 1.3e-09 68.6 101 39.6
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 3.8e-09 67.0 53 67.9
Cpa.g.sc67.52 Carica papaya HOM05D002799 ORTHO05D007076 3.2e-08 63.9 175 32.0
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 1.2e-07 62.0 47 61.7


User provided reference genes

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