Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 0.0e+00 2134.0 1165 100.0
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 2.4e-251 873.2 1141 48.7
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 8.1e-162 575.9 1031 38.2
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 2.1e-146 524.6 1012 37.5
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 2.7e-133 481.1 1005 36.6
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 1.9e-131 474.9 1004 36.0
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 1.1e-99 369.4 1028 30.9
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.4e-92 345.9 986 30.2
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.4e-92 345.9 988 31.6
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 2.3e-92 345.1 986 32.0
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 5.7e-91 340.5 987 30.6
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 1.7e-90 339.0 1010 31.1
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 7.0e-89 333.6 935 31.2
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 4.5e-88 330.9 988 31.2
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 1.2e-83 316.2 1000 29.4
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 9.8e-83 313.2 1044 29.4
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 4.5e-80 304.3 964 30.1
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 1.3e-79 302.8 733 32.9
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 9.5e-78 296.6 1020 30.1
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 2.8e-77 295.0 1014 29.7
Lj1A1029T62 Lonicera japonica HOM05D006657 ORTHO05D005964 5.4e-73 280.8 479 40.3
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 1.0e-71 276.6 1001 28.2
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 2.9e-71 275.0 989 29.9
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 6.6e-71 273.9 1086 27.8
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 2.3e-68 265.4 989 29.5
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 5.2e-68 264.2 1012 28.2
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 1.2e-67 263.1 988 29.6
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 5.4e-65 254.2 1007 27.9
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 1.2e-64 253.1 1008 28.4
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.6e-64 252.7 1034 27.4
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 2.3e-63 248.8 1020 28.5
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 6.6e-63 247.3 1028 26.8
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.1e-62 246.5 1001 28.1
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 1.5e-62 246.1 1061 27.0
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 2.5e-62 245.4 992 27.7
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 2.5e-62 245.4 1030 26.7
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 2.5e-62 245.4 986 27.7
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 2.5e-62 245.4 980 27.8
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 2.5e-62 245.4 980 27.7
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.1e-61 242.3 1037 26.7
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 2.1e-61 242.3 987 28.7
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 6.2e-61 240.7 1011 26.6
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 4.0e-60 238.0 1011 28.9
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 9.8e-59 233.4 1076 26.0
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 3.2e-57 228.4 994 27.4
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 4.1e-57 228.0 1004 27.2
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 4.1e-57 228.0 1014 27.4
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 1.6e-56 226.1 1000 27.6
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 1.6e-56 226.1 960 28.1
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 2.0e-56 225.7 955 26.8
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 8.6e-55 220.3 997 26.8
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 3.3e-54 218.4 934 25.3
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 2.1e-53 215.7 1041 26.4
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 1.1e-52 213.4 661 28.6
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 5.2e-52 211.1 992 27.1
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 2.6e-51 208.8 986 26.9
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 1.7e-50 206.1 999 26.0
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 1.9e-49 202.6 977 26.6
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 2.7e-48 198.7 979 25.8
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 4.6e-48 198.0 848 27.9
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 1.1e-44 186.8 984 25.7
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 2.0e-43 182.6 989 25.1
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 1.7e-42 179.5 965 25.9
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 1.0e-39 170.2 609 26.6
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 1.2e-37 163.3 996 24.6
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 1.2e-37 163.3 1020 24.2
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 6.9e-36 157.5 995 24.2
Oeu029332.2 Olea europaea HOM05D006657 ORTHO05D005964 5.8e-35 154.5 514 28.6
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 9.9e-35 153.7 990 24.9
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 8.4e-34 150.6 1031 25.2
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 4.6e-32 144.8 642 25.5
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 3.0e-31 142.1 575 28.7
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 1.1e-30 140.2 961 24.0
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 2.5e-30 139.0 627 26.3
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 3.3e-30 138.7 1076 21.9
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 1.6e-29 136.3 977 24.5
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 1.6e-29 136.3 764 25.3
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 5.3e-28 131.3 286 33.6
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 2.0e-27 129.4 571 26.1
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 3.4e-27 128.6 614 24.1
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 5.8e-27 127.9 1031 23.3
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 2.9e-26 125.6 286 31.8
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 6.4e-26 124.4 832 24.4
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 2.4e-25 122.5 1010 23.9
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 3.2e-25 122.1 1079 23.4
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 3.2e-25 122.1 1079 23.4
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 9.3e-25 120.6 626 25.6
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 2.1e-24 119.4 1072 23.3
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 1.8e-20 106.3 216 34.3
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 4.0e-20 105.1 796 23.0
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 1.2e-19 103.6 1041 21.6
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.6e-19 102.4 280 27.9
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 3.4e-19 102.1 158 37.3
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 5.8e-19 101.3 189 36.5
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.3e-18 100.1 990 23.1
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.7e-18 99.8 203 30.0
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 2.2e-18 99.4 584 23.6
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 1.6e-16 93.2 1045 21.2
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 2.1e-16 92.8 519 25.4
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 4.6e-16 91.7 932 22.5
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 5.1e-15 88.2 897 23.3
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 1.1e-14 87.0 1020 21.5
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 5.6e-14 84.7 338 25.4
CiPaw.06G039800 Carya illinoinensis HOM05D006657 ORTHO05D005964 1.3e-13 83.6 204 35.8
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 2.1e-13 82.8 1003 21.8
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 8.2e-13 80.9 281 28.1
MBI12_g20086_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.0e-10 73.9 225 35.1
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 1.3e-10 73.6 231 26.0
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 4.9e-10 71.6 231 24.7
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 8.4e-10 70.9 206 27.7
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 8.4e-10 70.9 206 27.7
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 8.4e-10 70.9 206 27.7
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 1.1e-09 70.5 380 23.4
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 1.4e-09 70.1 188 28.7
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 2.5e-09 69.3 309 26.2
CDE02G0079 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 4.2e-09 68.6 515 21.9
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 7.1e-09 67.8 190 28.9
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 7.1e-09 67.8 190 28.9
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 9.3e-09 67.4 284 25.0
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 9.3e-09 67.4 185 28.6
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 9.3e-09 67.4 185 28.6
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 9.3e-09 67.4 278 23.4
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 1.2e-08 67.0 185 30.8
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 4.6e-08 65.1 284 23.2
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 1.0e-07 63.9 207 28.0
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 1.0e-07 63.9 207 28.0
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 1.3e-07 63.5 283 24.0
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 1.8e-07 63.2 205 26.3
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 1.8e-07 63.2 556 23.9
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 3.0e-07 62.4 206 27.2
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 3.0e-07 62.4 206 27.2
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 3.0e-07 62.4 464 21.6
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 5.1e-07 61.6 207 25.6
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 5.1e-07 61.6 207 25.6
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 5.1e-07 61.6 519 20.4
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 6.7e-07 61.2 207 25.6
arahy.Tifrunner.gnm1.ann1.69Z0CE Arachis hypogaea HOM05D013241 ORTHO05D011012 1.5e-06 60.1 397 20.4
arahy.Tifrunner.gnm1.ann1.62N0H4 Arachis hypogaea HOM05D000074 ORTHO05D011012 3.3e-06 58.9 432 20.6
Lalb_Chr18g0054711 Lupinus albus HOM05D013241 ORTHO05D011012 3.3e-06 58.9 408 23.0
MELO3C024862.2 Cucumis melo HOM05D006657 ORTHO05D005964 4.3e-06 58.5 278 25.2


User provided reference genes

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