Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 0.0e+00 1926.8 958 100.0
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 5.8e-258 894.8 1108 46.4
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 9.8e-258 894.0 1106 46.2
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 2.3e-254 882.9 912 51.6
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 8.6e-254 880.9 1115 45.6
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 1.9e-253 879.8 1102 44.7
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 6.2e-252 874.8 918 50.3
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 3.4e-250 869.0 927 50.9
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 5.2e-243 845.1 905 49.2
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 1.7e-241 840.1 908 49.3
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 2.2e-241 839.7 919 49.3
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 4.9e-241 838.6 912 49.1
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 3.5e-239 832.4 912 49.6
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 3.3e-237 825.9 910 48.8
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 1.8e-235 820.1 921 48.4
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 2.4e-235 819.7 921 48.2
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 1.5e-234 817.0 901 47.9
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 9.9e-234 814.3 913 47.2
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 8.4e-233 811.2 912 49.3
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 1.6e-231 807.0 905 48.1
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 1.7e-230 803.5 1097 43.2
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 5.1e-230 802.0 913 48.1
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 8.7e-230 801.2 904 48.7
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 5.6e-229 798.5 1052 44.5
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 1.2e-228 797.3 919 49.5
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 1.6e-228 797.0 873 49.6
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 1.1e-227 794.3 913 47.5
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 1.1e-227 794.3 913 47.8
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 1.5e-226 790.4 905 47.1
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 3.4e-226 789.3 907 48.5
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 3.4e-226 789.3 905 48.2
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 3.8e-225 785.8 907 47.7
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 3.2e-224 782.7 907 48.1
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 4.6e-223 778.9 905 47.1
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 1.9e-221 773.5 863 50.3
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 6.7e-214 748.4 917 44.8
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 1.3e-212 744.2 911 45.7
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 8.1e-212 741.5 921 43.3
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 3.1e-211 739.6 911 45.0
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 4.0e-211 739.2 919 45.0
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 2.9e-209 733.0 918 44.8
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 2.9e-209 733.0 912 44.4
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 6.4e-209 731.9 918 44.7
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 1.1e-208 731.1 914 43.8
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 1.4e-208 730.7 906 44.2
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 5.5e-208 728.8 1094 39.7
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.6e-207 727.2 910 45.2
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 6.0e-207 725.3 913 45.0
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 3.0e-206 723.0 914 44.5
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 1.1e-205 721.1 909 44.9
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 1.5e-205 720.7 916 44.5
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.8e-204 716.5 906 44.4
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 1.4e-203 714.1 902 43.7
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 2.4e-203 713.4 908 44.7
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 3.4e-202 709.5 915 47.2
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 1.3e-201 707.6 905 45.7
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 1.7e-201 707.2 909 43.6
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 2.9e-201 706.4 834 47.7
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 3.8e-201 706.1 862 46.4
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 6.5e-201 705.3 904 42.6
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 8.4e-201 704.9 906 43.6
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 1.9e-200 703.7 906 43.4
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 6.0e-199 698.7 905 43.5
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 1.0e-198 698.0 904 44.6
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 1.3e-198 697.6 909 42.6
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 8.7e-198 694.9 905 44.2
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 2.2e-196 690.3 928 42.7
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 3.1e-195 686.4 905 44.4
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 2.0e-194 683.7 901 43.8
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 3.4e-194 682.9 798 45.9
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 5.9e-194 682.2 1090 38.7
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 2.2e-193 680.2 916 43.0
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 2.5e-184 650.2 924 40.7
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 3.6e-183 646.4 925 40.6
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 3.6e-183 646.4 824 45.4
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 2.3e-182 643.7 1069 38.4
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 5.1e-182 642.5 864 43.8
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 2.2e-180 637.1 643 52.3
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 1.3e-177 627.9 772 45.3
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 2.5e-176 623.6 912 41.4
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 1.1e-173 614.8 915 41.3
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 2.8e-172 610.1 1036 37.6
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 2.5e-168 597.0 645 49.8
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 7.2e-168 595.5 931 39.2
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 9.1e-163 578.6 965 35.5
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 5.9e-162 575.9 815 42.2
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 2.9e-161 573.5 485 57.9
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 1.2e-159 568.2 968 36.4
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 5.7e-157 559.3 705 45.0
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 9.8e-157 558.5 1135 34.4
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 4.1e-155 553.1 862 39.3
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 1.0e-150 538.5 811 40.0
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 2.3e-145 520.8 900 36.3
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 6.2e-135 486.1 705 41.7
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 7.5e-133 479.2 513 49.9
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 3.7e-132 476.9 948 34.3
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 6.4e-132 476.1 525 47.8
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 6.0e-130 469.5 560 46.2
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 3.2e-123 447.2 625 41.4
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.1e-120 438.7 617 40.2
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 1.6e-114 418.3 952 31.2
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 3.9e-113 413.7 946 31.1
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 9.6e-112 409.1 730 35.9
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 2.6e-109 401.0 567 42.3
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 4.5e-101 373.6 1193 27.0
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 1.4e-99 368.6 597 36.0
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 6.9e-86 323.2 383 46.2
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 1.9e-83 315.1 469 40.5
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 4.2e-83 313.9 676 34.2
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 2.7e-82 311.2 362 45.3
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 2.8e-79 301.2 814 29.4
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 8.8e-73 279.6 932 26.5
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 9.1e-70 269.6 333 49.2
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 6.5e-68 263.5 262 54.6
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 1.9e-67 261.9 367 42.0
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 8.2e-63 246.5 195 61.5
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 1.4e-57 229.2 159 67.9
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.1e-54 219.5 215 52.1
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 1.2e-53 216.1 301 41.5
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 3.5e-53 214.5 194 56.7
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 1.2e-50 206.1 198 54.5
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 3.6e-50 204.5 203 52.2
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 9.8e-48 196.4 369 36.0
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.7e-44 185.7 656 26.4
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 2.5e-43 181.8 262 40.5
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 5.2e-41 174.1 343 32.9
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 4.7e-34 151.0 842 21.6
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 6.4e-31 140.6 108 61.1
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 5.4e-22 110.9 77 63.6
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 2.0e-21 109.0 79 63.3
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 7.3e-19 100.5 122 43.4
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 2.1e-18 99.0 208 30.8
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 4.1e-14 84.7 142 34.5
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 1.5e-11 76.3 90 47.8
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 8.9e-09 67.0 169 29.0


User provided reference genes

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