Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 2.9e-135 485.3 262 100.0
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 2.6e-120 435.6 262 85.9
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 3.4e-120 435.3 262 85.9
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 4.5e-120 434.9 262 85.9
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 5.8e-120 434.5 262 85.1
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 85.9
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 86.3
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 1.3e-119 433.3 262 85.9
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 8.4e-119 430.6 262 85.5
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.1e-118 430.3 262 85.9
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 1.1e-118 430.3 262 85.9
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 85.1
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 84.0
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 84.0
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 84.0
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 9.3e-118 427.2 262 84.7
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 9.3e-118 427.2 262 84.0
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 9.3e-118 427.2 262 84.0
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 2.7e-117 425.6 262 84.0
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.7e-117 425.6 262 83.6
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 4.6e-117 424.9 262 83.6
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 84.4
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 84.0
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 85.1
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 85.1
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 84.0
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 81.3
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 1.8e-116 422.9 262 83.6
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 1.8e-116 422.9 262 81.7
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 84.4
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 84.0
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 3.9e-116 421.8 262 83.6
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 3.9e-116 421.8 262 83.6
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 83.6
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 83.6
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 6.7e-116 421.0 262 84.4
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 6.7e-116 421.0 262 85.5
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 6.7e-116 421.0 262 84.0
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 6.7e-116 421.0 262 84.0
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 6.7e-116 421.0 262 83.6
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.5e-115 419.1 262 81.3
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 83.6
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 4.3e-115 418.3 261 82.0
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 5.6e-115 417.9 262 80.5
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 7.4e-115 417.5 262 82.4
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 7.4e-115 417.5 262 80.5
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 7.4e-115 417.5 262 82.1
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 9.6e-115 417.2 262 81.7
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 9.6e-115 417.2 262 80.5
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 1.3e-114 416.8 262 80.9
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 1.6e-114 416.4 262 83.6
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.8e-114 415.6 262 80.5
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 2.8e-114 415.6 262 84.0
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 4.8e-114 414.8 262 80.2
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 6.2e-114 414.5 262 82.8
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 6.2e-114 414.5 252 85.3
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 6.2e-114 414.5 262 83.6
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 6.2e-114 414.5 262 83.6
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.1e-113 413.7 262 81.3
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 1.4e-113 413.3 262 80.5
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 1.4e-113 413.3 262 80.9
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 1.4e-113 413.3 262 80.9
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 1.8e-113 412.9 262 81.3
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 1.8e-113 412.9 262 82.4
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.8e-113 412.9 262 83.2
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 3.1e-113 412.1 262 80.5
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 3.1e-113 412.1 262 80.9
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 5.3e-113 411.4 262 80.5
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 5.3e-113 411.4 262 82.8
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 5.3e-113 411.4 263 81.0
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 6.9e-113 411.0 262 80.2
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 1.2e-112 410.2 262 79.4
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 1.2e-112 410.2 262 80.2
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 2.0e-112 409.5 262 83.2
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 3.4e-112 408.7 263 80.6
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 3.4e-112 408.7 262 79.8
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 3.4e-112 408.7 262 79.8
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 3.4e-112 408.7 262 79.8
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 4.5e-112 408.3 262 79.8
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 7.6e-112 407.5 259 82.2
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 9.9e-112 407.1 263 80.2
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 4.9e-111 404.8 262 78.6
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 6.4e-111 404.4 262 80.2
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 8.4e-111 404.1 263 79.5
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.1e-110 403.7 262 79.8
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 1.4e-110 403.3 262 77.9
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 2.5e-110 402.5 262 77.9
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 5.5e-110 401.4 263 79.1
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 7.1e-110 401.0 262 76.7
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 7.1e-110 401.0 262 78.2
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 1.0e-108 397.1 262 77.9
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.8e-108 396.4 264 76.9
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 8.7e-108 394.0 239 86.6
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 1.1e-107 393.7 262 80.2
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 77.9
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 2.5e-107 392.5 263 78.3
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 2.5e-107 392.5 264 77.3
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 3.3e-107 392.1 247 83.8
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 3.3e-107 392.1 247 83.8
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 1.6e-106 389.8 262 77.5
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 1.6e-106 389.8 262 77.5
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 2.1e-106 389.4 262 77.1
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 2.1e-106 389.4 262 77.1
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 2.1e-106 389.4 262 77.1
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 2.1e-106 389.4 262 77.1
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 2.8e-106 389.0 262 77.1
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 3.7e-106 388.7 262 77.1
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 3.7e-106 388.7 262 77.1
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 3.7e-106 388.7 264 76.5
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 4.8e-106 388.3 262 77.1
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 6.2e-106 387.9 262 76.7
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 6.2e-106 387.9 262 76.7
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 8.2e-106 387.5 262 76.7
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 1.1e-105 387.1 262 76.3
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 1.1e-105 387.1 262 76.7
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 1.1e-105 387.1 262 76.7
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 3.1e-105 385.6 262 76.3
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 1.5e-104 383.3 263 76.4
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 1.5e-104 383.3 263 76.4
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 1.5e-104 383.3 263 76.4
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 5.8e-104 381.3 255 77.6
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.1e-102 377.1 263 77.2
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 3.2e-102 375.6 263 76.8
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 4.2e-102 375.2 263 76.4
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 4.2e-102 375.2 262 77.1
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 4.2e-102 375.2 270 74.1
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 9.3e-102 374.0 264 77.3
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 2.1e-101 372.9 270 73.0
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 4.6e-101 371.7 266 77.1
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 3.9e-100 368.6 262 77.1
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 9.7e-99 364.0 248 77.8
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 2.8e-98 362.5 264 74.6
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 8.2e-98 360.9 263 74.1
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 1.8e-97 359.8 218 86.2
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.0e-95 354.0 249 73.1
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 6.1e-93 344.7 241 77.2
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 6.7e-92 341.3 234 75.2
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 5.7e-91 338.2 226 77.0
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 5.7e-91 338.2 209 83.7
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.7e-90 336.7 263 66.5
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 1.8e-89 333.2 223 77.6
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 4.1e-89 332.0 262 66.8
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.0e-88 329.7 263 64.3
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 5.9e-88 328.2 214 80.4
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 2.9e-87 325.9 218 77.5
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 3.5e-80 302.4 267 61.8
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 4.2e-78 295.4 218 68.8
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 3.9e-76 288.9 250 64.8
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 8.8e-76 287.7 232 61.2
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 2.0e-75 286.6 247 64.8
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 7.4e-75 284.6 204 74.5
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 3.1e-73 279.3 208 69.2
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 3.8e-71 272.3 250 61.2
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 1.4e-68 263.8 263 58.2
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 4.4e-67 258.8 270 56.3
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 9.7e-67 257.7 262 58.8
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 2.8e-66 256.1 209 65.6
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.2e-58 229.9 235 58.7
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 3.6e-53 212.6 244 49.6
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.4e-52 210.7 130 80.8
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.2e-50 203.4 120 85.0
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 3.2e-49 199.5 196 54.6
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 1.0e-47 194.5 138 75.4
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 6.6e-47 191.8 118 85.6
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 4.4e-43 179.1 179 54.7
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 2.8e-37 159.8 191 53.9
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 5.4e-33 145.6 127 64.6
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 3.4e-27 126.3 96 64.6
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 3.5e-24 116.3 69 87.0


User provided reference genes

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