Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 1.3e-45 186.0 91 100.0
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 7.2e-17 90.5 84 56.0
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 8.8e-15 83.6 93 50.5
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 1.1e-14 83.2 80 56.2
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 1.5e-14 82.8 93 51.6
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 1.5e-14 82.8 87 52.9
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 2.5e-14 82.0 76 55.3
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 3.3e-14 81.6 86 47.7
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 4.3e-14 81.3 92 51.1
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 9.7e-14 80.1 88 53.4
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.3e-13 79.7 74 55.4
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 1.7e-13 79.3 82 56.1
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 3.7e-13 78.2 80 55.0
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 3.7e-13 78.2 79 54.4
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 4.8e-13 77.8 74 60.8
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 8.2e-13 77.0 91 50.5
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 2.4e-12 75.5 65 60.0
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.4e-12 75.5 76 51.3
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 2.4e-12 75.5 76 52.6
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 3.1e-12 75.1 59 64.4
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 6.9e-12 73.9 92 44.6
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 6.9e-12 73.9 77 54.5
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 9.1e-12 73.6 79 50.6
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 1.2e-11 73.2 75 52.0
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.2e-11 73.2 75 54.7
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 1.5e-11 72.8 88 47.7
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 2.0e-11 72.4 69 56.5
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.0e-11 72.4 64 56.2
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.0e-11 72.4 78 52.6
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 2.0e-11 72.4 79 50.6
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 2.0e-11 72.4 79 50.6
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 2.0e-11 72.4 88 47.7
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 3.4e-11 71.6 79 48.1
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 3.4e-11 71.6 77 53.2
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 3.4e-11 71.6 72 52.8
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 3.4e-11 71.6 77 57.1
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 4.5e-11 71.2 92 45.7
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 5.9e-11 70.9 76 50.0
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 5.9e-11 70.9 76 50.0
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 5.9e-11 70.9 82 45.1
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 5.9e-11 70.9 77 51.9
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 5.9e-11 70.9 79 48.1
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 1.0e-10 70.1 83 48.2
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.7e-10 69.3 86 47.7
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.7e-10 69.3 86 50.0
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 2.2e-10 68.9 79 53.2
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 2.2e-10 68.9 93 44.1
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 2.9e-10 68.6 76 55.3
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 3.8e-10 68.2 79 48.1
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 5.0e-10 67.8 76 55.3
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 5.0e-10 67.8 68 58.8
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 8.5e-10 67.0 84 45.2
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 1.1e-09 66.6 75 50.7
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 1.1e-09 66.6 82 43.9
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 1.1e-09 66.6 82 50.0
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 1.1e-09 66.6 60 55.0
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.4e-09 66.2 68 48.5
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.4e-09 66.2 76 53.9
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 1.4e-09 66.2 85 48.2
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 1.9e-09 65.9 80 45.0
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.9e-09 65.9 84 44.0
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 2.5e-09 65.5 61 54.1
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 2.5e-09 65.5 38 78.9
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 2.5e-09 65.5 69 55.1
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 2.5e-09 65.5 119 38.7
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 3.2e-09 65.1 83 44.6
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.2e-09 65.1 83 44.6
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.2e-09 65.1 83 44.6
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 4.2e-09 64.7 59 54.2
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 5.5e-09 64.3 83 43.4
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 9.4e-09 63.5 68 47.1
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.2e-08 63.2 66 48.5
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.2e-08 63.2 90 41.1
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.6e-08 62.8 68 47.1
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.6e-08 62.8 76 44.7
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 2.1e-08 62.4 76 50.0
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 2.1e-08 62.4 85 48.2
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 2.7e-08 62.0 73 46.6
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 2.7e-08 62.0 64 50.0
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.6e-08 61.6 83 43.4
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 3.6e-08 61.6 65 47.7
Aqoxy5G00895 Aquilegia oxysepala HOM05D003189 ORTHO05D003449 4.7e-08 61.2 63 54.0
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 6.1e-08 60.8 44 61.4
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 6.1e-08 60.8 75 46.7
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 6.1e-08 60.8 86 45.3
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 7.9e-08 60.5 95 41.1
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 1.0e-07 60.1 44 61.4
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 1.0e-07 60.1 84 45.2
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 1.4e-07 59.7 35 74.3
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 1.8e-07 59.3 38 68.4
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 2.3e-07 58.9 58 53.4
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 2.3e-07 58.9 72 51.4
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 2.3e-07 58.9 76 44.7
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 3.0e-07 58.5 81 44.4
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 3.9e-07 58.2 86 40.7
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 5.1e-07 57.8 43 60.5
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 6.7e-07 57.4 44 59.1
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 6.7e-07 57.4 64 46.9
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 1.1e-06 56.6 66 51.5
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 1.1e-06 56.6 65 47.7
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 1.5e-06 56.2 53 54.7
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 1.5e-06 56.2 45 60.0
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 1.5e-06 56.2 70 45.7
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 2.0e-06 55.8 38 68.4
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 2.0e-06 55.8 40 72.5
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 2.0e-06 55.8 63 49.2
AUR62024064 Chenopodium quinoa HOM05D004288 ORTHO05D004997 4.4e-06 54.7 62 51.6
ECA246G3669 Erigeron canadensis HOM05D002841 ORTHO05D003158 5.7e-06 54.3 39 64.1
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 7.4e-06 53.9 71 43.7
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 7.4e-06 53.9 68 36.8
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 9.7e-06 53.5 51 51.0
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 9.7e-06 53.5 65 47.7


User provided reference genes

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