Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008767 Daucus carota HOM05D002134 ORTHO05D008658 0.0e+00 1441.8 908 100.0
Dinv36064 Davidia involucrata HOM05D002134 ORTHO05D008658 2.3e-155 553.9 641 54.0
Actinidia38014 Actinidia chinensis HOM05D002134 ORTHO05D008658 6.9e-152 542.3 581 57.7
GSVIVG01009687001 Vitis vinifera HOM05D002134 ORTHO05D008658 4.0e-144 516.5 628 51.9
vmacro04518 Vaccinium macrocarpon HOM05D002134 ORTHO05D008658 4.2e-141 506.5 714 49.3
CSS0008789 Camellia sinensis var. sinensis HOM05D002134 ORTHO05D008658 1.8e-139 501.1 722 47.0
Cfa018138 Carpinus fangiana HOM05D002134 ORTHO05D008658 4.8e-137 493.0 738 46.1
CiPaw.15G075800 Carya illinoinensis HOM05D002134 ORTHO05D008658 8.4e-134 482.3 604 50.7
QL02p007944 Quercus lobata HOM05D002134 ORTHO05D008658 2.5e-133 480.7 700 48.1
Haze_17986 Corylus avellana HOM05D002134 ORTHO05D008658 6.7e-131 472.6 779 44.5
Nn5g29542 Nelumbo nucifera HOM05D002134 ORTHO05D008658 1.4e-128 464.9 667 48.9
Nitab4.5_0006995g0020 Nicotiana tabacum HOM05D002134 ORTHO05D008658 1.4e-128 464.9 933 40.1
Nitab4.5_0000523g0050 Nicotiana tabacum HOM05D002134 ORTHO05D008658 3.1e-128 463.8 704 44.5
Rhsim07G0237200 Rhododendron simsii HOM05D002134 ORTHO05D008658 1.9e-125 454.5 754 44.3
Peaxi162Scf00925g00033 Petunia axillaris HOM05D002134 ORTHO05D008658 9.3e-125 452.2 704 45.0
Cc10_g03060 Coffea canephora HOM05D002134 ORTHO05D008658 1.3e-123 448.4 765 42.7
TAR376G0546 Trochodendron aralioides HOM05D002134 ORTHO05D008658 4.8e-121 439.9 598 50.3
TWI12G0094 Tripterygium wilfordii HOM05D002134 ORTHO05D008658 1.1e-120 438.7 638 47.0
ECA247G2410 Erigeron canadensis HOM05D002134 ORTHO05D008658 4.1e-120 436.8 670 46.0
Manes.05G161600 Manihot esculenta HOM05D002134 ORTHO05D008658 9.1e-120 435.6 586 48.0
Migut.C00708 Erythranthe guttata HOM05D002134 ORTHO05D008658 1.3e-118 431.8 753 42.9
Eucgr.F01907 Eucalyptus grandis HOM05D002134 ORTHO05D008658 5.0e-118 429.9 719 43.9
SalBow7G3154 Salvia bowleyana HOM05D002134 ORTHO05D008658 1.1e-117 428.7 597 47.7
Atru.chr8.2604 Acer truncatum HOM05D002134 ORTHO05D008658 2.1e-116 424.5 661 45.1
Atru.chr13.512 Acer truncatum HOM05D002134 ORTHO05D008658 1.0e-115 422.2 664 45.0
Sopen07g013310 Solanum pennellii HOM05D002134 ORTHO05D008658 1.1e-114 418.7 695 43.3
SGA_v2.0_scaffold48G18075 Striga asiatica HOM05D002134 ORTHO05D008658 2.0e-114 417.9 651 45.8
Duzib116G0898 Durio zibethinus HOM05D002134 ORTHO05D008658 1.7e-113 414.8 624 46.0
Sabra02G0199600 Salix brachista HOM05D002134 ORTHO05D008658 2.2e-113 414.5 609 45.0
Ciclev10000375m.g Citrus clementina HOM05D002134 ORTHO05D008658 4.8e-113 413.3 583 45.8
Ca_15521_v3 Cicer arietinum L. HOM05D002134 ORTHO05D008658 8.2e-113 412.5 635 43.9
Solyc07g025380.3 Solanum lycopersicum HOM05D002134 ORTHO05D008658 7.7e-111 406.0 695 42.3
Lj1g0006718 Lotus japonicus HOM05D002134 ORTHO05D008658 1.3e-110 405.2 642 42.7
MD08G1033500 Malus domestica HOM05D002134 ORTHO05D008658 3.8e-110 403.7 686 43.4
Potri.002G262800 Populus trichocarpa HOM05D002134 ORTHO05D008658 3.8e-110 403.7 645 43.7
Medtr3g111740 Medicago truncatula HOM05D002134 ORTHO05D008658 8.5e-110 402.5 596 44.8
PGSC0003DMG400007581 Solanum tuberosum HOM05D002134 ORTHO05D008658 3.2e-109 400.6 606 45.0
Duzib093G1270 Durio zibethinus HOM05D002134 ORTHO05D008658 3.0e-107 394.0 613 44.4
Thecc.08G024500 Theobroma cacao HOM05D002134 ORTHO05D008658 6.7e-107 392.9 715 42.4
Aqoxy6G01051 Aquilegia oxysepala HOM05D002134 ORTHO05D008658 1.5e-106 391.7 568 47.2
Lsat_1_v5_gn_1_17581 Lactuca sativa HOM05D002134 ORTHO05D008658 3.3e-106 390.6 655 42.4
CAN.G52.14 Capsicum annuum HOM05D002134 ORTHO05D008658 1.3e-105 388.7 725 41.0
Phvul.009G057000 Phaseolus vulgaris HOM05D002134 ORTHO05D008658 4.8e-105 386.7 577 44.5
CANSAT25G1781 Cannabis sativa HOM05D002134 ORTHO05D008658 1.1e-104 385.6 723 41.4
PGR031G3893 Punica granatum HOM05D002134 ORTHO05D008658 1.1e-104 385.6 582 44.8
HanXRQChr04g0105601 Helianthus annuus HOM05D002134 ORTHO05D008658 4.1e-104 383.6 601 44.4
Lj4A785T29 Lonicera japonica HOM05D002134 ORTHO05D008658 4.1e-104 383.6 529 50.1
Gohir.D01G104800 Gossypium hirsutum HOM05D002134 ORTHO05D008658 1.2e-103 382.1 665 43.9
MBI16_g17456_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 1.2e-103 382.1 595 45.5
Prupe.1G381400 Prunus persica HOM05D002134 ORTHO05D008658 1.6e-103 381.7 696 40.7
Gorai.002G128800 Gossypium raimondii HOM05D002134 ORTHO05D008658 2.6e-103 380.9 672 43.8
Gohir.A01G116400 Gossypium hirsutum HOM05D002134 ORTHO05D008658 3.5e-103 380.6 708 41.8
arahy.Tifrunner.gnm1.ann1.20CGAG Arachis hypogaea HOM05D002134 ORTHO05D008658 7.7e-103 379.4 600 43.8
Lalb_Chr23g0266641 Lupinus albus HOM05D002134 ORTHO05D008658 1.0e-102 379.0 686 40.1
MD15G1030200 Malus domestica HOM05D002134 ORTHO05D008658 1.3e-102 378.6 617 44.6
Glyma.04G033100 Glycine max HOM05D002134 ORTHO05D008658 2.2e-102 377.9 583 44.3
TPR.G12392 Trifolium pratense HOM05D002134 ORTHO05D008658 2.5e-101 374.4 690 42.3
Glyma.06G033100 Glycine max HOM05D002134 ORTHO05D008658 4.2e-101 373.6 671 40.2
Psat0s2660g0080 Pisum sativum HOM05D002134 ORTHO05D008658 1.2e-100 372.1 579 44.2
CsaV3_3G045010 Cucumis sativus L. HOM05D002134 ORTHO05D008658 4.7e-100 370.2 672 41.2
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 5.2e-99 366.7 570 43.2
MELO3C003852.2 Cucumis melo HOM05D002134 ORTHO05D008658 2.0e-98 364.8 671 41.0
FAN27G2069 Fragaria x ananassa HOM05D002134 ORTHO05D008658 9.7e-98 362.5 611 46.0
FvH4_2g39970 Fragaria vesca HOM05D002134 ORTHO05D008658 1.3e-97 362.1 580 47.1
ClCG05G019130 Citrullus lanatus HOM05D002134 ORTHO05D008658 7.0e-96 356.3 763 38.9
Sed0018102 Sechium edule HOM05D002134 ORTHO05D008658 7.0e-96 356.3 674 40.1
arahy.Tifrunner.gnm1.ann1.6UHH7V Arachis hypogaea HOM05D002134 ORTHO05D008658 8.5e-94 349.4 584 42.6
RcHm_v2.0_Chr6g0300781 Rosa chinensis HOM05D002134 ORTHO05D008658 1.1e-93 349.0 566 46.6
PSO541G2605 Papaver somniferum HOM05D002134 ORTHO05D008658 8.0e-92 342.8 689 41.2
PSO675G8956 Papaver somniferum HOM05D002134 ORTHO05D008658 2.8e-89 334.3 672 40.6
FAN20G2431 Fragaria x ananassa HOM05D002134 ORTHO05D003893 2.5e-85 321.2 586 44.0
FAN15G0789 Fragaria x ananassa HOM05D002134 ORTHO05D003893 2.8e-84 317.8 583 44.3
Hma1.2p1_0203F.1_g086500 Hydrangea macrophylla HOM05D002134 ORTHO05D008658 5.2e-83 313.5 289 63.3
THA.LOC104813840 Tarenaya hassleriana HOM05D002134 ORTHO05D008658 1.2e-82 312.4 630 40.6
ATR0733G232 Amborella trichopoda HOM05D002134 ORTHO05D008658 4.4e-82 310.5 589 43.1
Hund27548 Selenicereus undatus HOM05D002134 ORTHO05D008658 2.4e-80 304.7 558 42.8
Hund27550 Selenicereus undatus HOM05D002134 ORTHO05D008658 2.4e-80 304.7 558 42.8
Lalb_Chr08g0245851 Lupinus albus HOM05D002134 ORTHO05D008658 9.5e-77 292.7 628 36.6
Sed0020001 Sechium edule HOM05D002134 ORTHO05D008658 4.1e-72 277.3 519 39.5
unitig_37.g12967 Utricularia gibba HOM05D002134 ORTHO05D008658 1.2e-68 265.8 702 35.2
Sc02g0006290 Simmondsia chinensis HOM05D002134 ORTHO05D008658 6.8e-67 260.0 491 40.3
CDE02G0502 Ceratophyllum demersum HOM05D002134 ORTHO05D008658 2.9e-65 254.6 605 36.9
MBI16_g45959_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 1.1e-64 252.7 533 41.3
Zm00001eb061990 Zea mays HOM05D002134 ORTHO05D008658 1.4e-64 252.3 603 37.8
EL10Ac1g01833 Beta vulgaris HOM05D002134 ORTHO05D008658 4.6e-63 247.3 654 35.2
AL2G35050 Arabidopsis lyrata HOM05D002134 ORTHO05D008658 1.0e-62 246.1 720 34.0
DCAR_011210 Daucus carota HOM05D001893 ORTHO05D008658 1.3e-62 245.7 291 57.7
BraA07t31617Z Brassica rapa HOM05D002134 ORTHO05D008658 1.7e-62 245.4 653 35.1
Aa31LG4G5340 Aethionema arabicum HOM05D002134 ORTHO05D008658 6.6e-62 243.4 669 33.3
A07p40750 Brassica napus HOM05D002134 ORTHO05D008658 1.9e-61 241.9 651 34.1
SEGI_00628 Sequoiadendron giganteum HOM05D002134 ORTHO05D008658 2.5e-61 241.5 665 34.6
Sp5g30280 Schrenkiella parvula HOM05D002134 ORTHO05D008658 1.2e-58 232.6 656 33.7
Carub.0002s2196 Capsella rubella HOM05D002134 ORTHO05D008658 3.4e-58 231.1 722 33.5
Thhalv10019843m.g Eutrema salsugineum HOM05D002134 ORTHO05D008658 4.4e-58 230.7 626 34.3
AT1G75150 Arabidopsis thaliana HOM05D002134 ORTHO05D008658 6.4e-57 226.9 638 33.5
C06p49130 Brassica napus HOM05D002134 ORTHO05D008658 3.2e-56 224.6 659 33.5
BolC6t39947H Brassica oleracea HOM05D002134 ORTHO05D008658 3.2e-56 224.6 659 33.5
BcaC08g46941 Brassica carinata HOM05D000061 ORTHO05D008658 4.1e-56 224.2 661 33.9
CARHR068480 Cardamine hirsuta HOM05D002134 ORTHO05D008658 4.6e-55 220.7 729 32.9
AUR62034948 Chenopodium quinoa HOM05D002134 ORTHO05D008658 1.7e-54 218.8 616 33.3
BcaC08g46976 Brassica carinata HOM05D002134 ORTHO05D008658 6.2e-52 210.3 640 31.4
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 1.8e-51 208.8 467 36.2
AUR62035457 Chenopodium quinoa HOM05D002134 ORTHO05D008658 7.6e-50 203.4 632 32.6
Ah.11g043170 Amaranthus hybridus HOM05D002134 ORTHO05D008658 1.2e-47 196.1 688 31.4
SHI17315 Sapria himalayana HOM05D002134 ORTHO05D008658 4.9e-41 174.1 607 31.1
Cpa.g.sc64.74 Carica papaya HOM05D002134 ORTHO05D008658 1.3e-38 166.0 393 38.9
Oeu036193.1 Olea europaea HOM05D002134 ORTHO05D008658 2.5e-37 161.8 252 42.5
SMO144G0024 Selaginella moellendorffii HOM05D002134 ORTHO05D008658 2.9e-33 148.3 614 31.6
HPP92_018472 Vanilla planifolia HOM05D002134 ORTHO05D008658 9.3e-32 143.3 448 33.9
Mapoly0032s0034 Marchantia polymorpha HOM05D002134 ORTHO05D008658 2.7e-31 141.7 674 28.2
Cpa.g.sc64.73 Carica papaya HOM05D002134 ORTHO05D008658 1.8e-27 129.0 198 43.4
Pp3c7_550 Physcomitrium patens HOM05D002134 ORTHO05D008658 3.1e-27 128.3 690 26.8
Pp3c7_551 Physcomitrium patens HOM05D002134 ORTHO05D008658 3.1e-27 128.3 690 26.8
DCAR_013979 Daucus carota HOM05D000231 ORTHO05D000132 4.5e-26 124.4 401 32.9
Actinidia29830 Actinidia chinensis HOM05D002134 ORTHO05D008658 6.7e-14 84.0 152 43.4
HPP92_018471 Vanilla planifolia HOM05D002134 ORTHO05D008658 1.6e-12 79.3 183 38.8
Peaxi162Scf00162g00213 Petunia axillaris HOM05D000561 ORTHO05D000514 2.2e-12 79.0 170 38.2


User provided reference genes

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