Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 0.0e+00 1866.7 1005 100.0
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 6.6e-188 662.1 1087 42.3
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 5.3e-161 572.8 1077 39.6
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 5.3e-161 572.8 1043 40.8
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 3.0e-156 557.0 1095 39.6
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 4.8e-154 549.7 1041 38.1
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 9.9e-152 542.0 1102 38.2
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 1.1e-150 538.5 1065 37.9
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 3.9e-140 503.4 1078 37.5
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 9.6e-139 498.8 1096 36.7
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 1.5e-136 491.5 1098 35.1
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 3.4e-136 490.3 1098 34.0
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 7.6e-136 489.2 1055 36.5
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 5.5e-134 483.0 1098 36.3
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 5.1e-132 476.5 1088 35.4
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 8.7e-132 475.7 1089 34.6
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 5.7e-131 473.0 1087 36.3
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 9.7e-131 472.2 1094 34.8
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 1.3e-130 471.9 1080 35.1
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 2.8e-130 470.7 1042 36.5
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 1.8e-129 468.0 1086 35.8
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 4.1e-129 466.8 1091 34.6
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.0e-127 462.2 1090 34.5
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 3.8e-127 460.3 1090 34.2
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 5.5e-126 456.4 1100 34.9
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 9.4e-126 455.7 1082 36.0
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 1.2e-125 455.3 1041 36.2
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 1.1e-123 448.7 1087 35.2
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 2.8e-122 444.1 1065 35.9
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 4.8e-122 443.4 1011 35.6
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 6.3e-122 443.0 1098 34.4
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 1.7e-119 434.9 1049 35.3
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 4.2e-118 430.3 1091 33.8
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 2.6e-115 421.0 1069 32.9
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 9.7e-115 419.1 1042 34.8
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 6.3e-114 416.4 1121 33.1
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 8.2e-114 416.0 1091 33.8
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 1.8e-113 414.8 1090 33.3
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 7.7e-112 409.5 1038 34.1
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 5.5e-110 403.3 1108 33.9
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 3.9e-108 397.1 1033 33.0
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 5.2e-108 396.7 1090 33.0
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 2.6e-107 394.4 1017 33.4
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 2.2e-106 391.3 1055 33.1
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 4.8e-106 390.2 931 36.4
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 4.8e-106 390.2 853 37.2
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 1.8e-105 388.3 1093 32.3
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 3.5e-104 384.0 1099 32.9
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 1.1e-102 379.0 1060 32.5
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 1.0e-100 372.5 1098 34.2
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 1.1e-97 362.5 1037 32.2
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 2.4e-97 361.3 1082 32.7
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 9.1e-97 359.4 1037 32.2
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 1.3e-95 355.5 1076 31.4
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 1.3e-95 355.5 1050 32.5
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 3.2e-94 350.9 1104 30.9
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 9.4e-94 349.4 1075 32.4
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 9.4e-94 349.4 1049 31.1
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 1.6e-93 348.6 1076 31.6
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 4.4e-91 340.5 1047 31.5
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 9.8e-91 339.3 1039 32.0
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 9.8e-91 339.3 1067 31.5
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 8.3e-90 336.3 1087 31.7
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 8.3e-90 336.3 1050 30.9
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 1.4e-89 335.5 1066 30.7
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 1.6e-88 332.0 1110 31.2
ECA246G4903 Erigeron canadensis HOM05D006788 ORTHO05D008265 5.9e-88 330.1 1027 32.3
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 1.7e-87 328.6 1021 30.2
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 3.0e-84 317.8 1075 30.0
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 7.0e-81 306.6 1036 31.2
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 1.0e-79 302.8 1093 31.7
THA.LOC104798640 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 2.9e-79 301.2 1065 28.7
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 8.0e-77 293.1 1016 29.7
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 1.2e-75 289.3 852 32.3
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 7.5e-75 286.6 1066 30.3
Gohir.D05G197766 Gossypium hirsutum HOM05D006788 ORTHO05D008265 9.8e-75 286.2 948 31.0
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 9.5e-70 269.6 1011 29.4
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 2.8e-69 268.1 427 43.6
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 6.2e-69 266.9 915 30.2
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 1.5e-67 262.3 1075 28.9
TPR.G1461 Trifolium pratense HOM05D006788 ORTHO05D008265 1.2e-64 252.7 1037 30.0
Medtr8g107730 Medicago truncatula HOM05D006788 ORTHO05D008265 8.6e-63 246.5 1035 29.6
Sed0005360 Sechium edule HOM05D006788 ORTHO05D008265 1.1e-62 246.1 850 32.2
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 7.3e-62 243.4 745 32.1
Sp2g07230 Schrenkiella parvula HOM05D006788 ORTHO05D008265 9.5e-62 243.0 1038 28.2
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 3.1e-60 238.0 1029 27.8
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 1.2e-59 236.1 1028 27.4
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 2.6e-59 235.0 1024 28.0
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 2.6e-59 235.0 1027 27.7
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 7.6e-59 233.4 1029 27.8
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 3.2e-57 228.0 1019 27.2
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 5.4e-57 227.3 1013 27.4
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 2.1e-56 225.3 1011 26.7
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 1.1e-54 219.5 1010 26.4
Gohir.A03G078650 Gossypium hirsutum HOM05D006788 ORTHO05D008265 3.3e-54 218.0 1024 27.2
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 9.6e-54 216.5 1019 26.1
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 4.9e-50 204.1 985 26.6
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 1.1e-49 203.0 1015 25.8
Lalb_Chr05g0221391 Lupinus albus HOM05D006788 ORTHO05D008265 1.9e-49 202.2 636 30.3
AT5G42710 Arabidopsis thaliana HOM05D006788 ORTHO05D008265 1.9e-46 192.2 1015 25.1
Cpa.g.sc36.70 Carica papaya HOM05D006788 ORTHO05D008265 2.4e-44 185.3 235 44.3
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 6.9e-44 183.7 370 37.0
RcHm_v2.0_Chr6g0300941 Rosa chinensis HOM05D006788 ORTHO05D008265 4.2e-41 174.5 201 47.8
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 2.7e-40 171.8 1041 25.6
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 6.9e-36 157.1 1231 24.0
Hma1.2p1_2195F.1_g316830 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 7.6e-35 153.7 386 34.7
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 4.9e-34 151.0 558 30.6
Os03g0775700 Oryza sativa ssp. japonica HOM05D006788 ORTHO05D008265 2.9e-26 125.2 1051 23.0
Zm00001eb213730 Zea mays HOM05D006788 ORTHO05D008265 3.2e-25 121.7 1046 23.4
Atru.chr13.490 Acer truncatum HOM05D006788 ORTHO05D008265 6.7e-23 114.0 125 50.4
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 6.2e-21 107.5 1011 22.8
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 3.8e-18 98.2 898 23.1
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 9.7e-14 83.6 173 32.9
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 8.2e-13 80.5 212 32.1
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 4.1e-12 78.2 884 21.0
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 2.6e-11 75.5 216 30.6
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 1.0e-10 73.6 215 31.6
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 2.2e-10 72.4 120 38.3
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 2.9e-10 72.0 889 24.2
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 2.9e-10 72.0 93 44.1
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 1.4e-09 69.7 889 22.4
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 3.2e-09 68.6 881 22.5
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 4.2e-09 68.2 244 30.7
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 5.5e-09 67.8 71 45.1
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 5.5e-09 67.8 901 23.4
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 9.4e-09 67.0 899 22.8
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 1.6e-08 66.2 125 34.4
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 2.1e-08 65.9 878 22.0
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 2.1e-08 65.9 888 21.8
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 2.1e-08 65.9 113 37.2
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 2.7e-08 65.5 240 28.3
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 6.1e-08 64.3 206 27.7
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 7.9e-08 63.9 259 26.6
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 7.9e-08 63.9 872 23.4
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.0e-07 63.5 892 22.8
CDE04G2912 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 1.4e-07 63.2 272 26.1
unitig_578.g16070 Utricularia gibba HOM05D006788 ORTHO05D008265 1.4e-07 63.2 559 23.6
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 2.3e-07 62.4 108 39.8
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 2.3e-07 62.4 168 28.0
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 2.3e-07 62.4 208 28.8
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 2.3e-07 62.4 888 21.2
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 3.0e-07 62.0 890 23.3
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 3.0e-07 62.0 550 23.1
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 6.7e-07 60.8 923 21.7
PGR142G3553 Punica granatum HOM05D005593 ORTHO05D006515 8.8e-07 60.5 189 29.6
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 1.1e-06 60.1 870 20.5
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 2.0e-06 59.3 879 22.8
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 2.0e-06 59.3 874 21.5
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 2.5e-06 58.9 225 30.2
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 2.5e-06 58.9 208 27.9
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 4.3e-06 58.2 888 21.3
Sc08g0007580 Simmondsia chinensis HOM05D005593 ORTHO05D006515 4.3e-06 58.2 208 29.8


User provided reference genes

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