Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 6.7e-66 253.8 124 100.0
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 7.6e-54 213.8 124 78.2
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 5.0e-53 211.1 124 75.8
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 6.5e-53 210.7 124 77.4
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 6.5e-53 210.7 124 76.6
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 8.4e-53 210.3 124 79.0
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 1.1e-52 209.9 124 76.6
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 2.5e-52 208.8 124 75.0
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 3.2e-52 208.4 124 79.8
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 3.2e-52 208.4 124 76.6
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 5.5e-52 207.6 124 79.0
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 7.2e-52 207.2 124 76.6
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 9.3e-52 206.8 124 76.6
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 2.1e-51 205.7 124 78.2
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 2.7e-51 205.3 124 75.0
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 3.5e-51 204.9 124 78.2
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 3.5e-51 204.9 124 79.0
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 4.6e-51 204.5 126 75.4
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 4.6e-51 204.5 126 75.4
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 4.6e-51 204.5 126 76.2
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 1.0e-50 203.4 124 76.6
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 1.3e-50 203.0 124 77.4
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 1.3e-50 203.0 126 74.6
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 1.3e-50 203.0 125 76.8
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 1.3e-50 203.0 124 77.4
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 1.8e-50 202.6 124 75.0
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 1.8e-50 202.6 124 77.4
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 1.8e-50 202.6 124 77.4
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 2.3e-50 202.2 124 77.4
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 3.0e-50 201.8 124 77.4
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 3.0e-50 201.8 124 77.4
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 3.0e-50 201.8 124 77.4
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 3.0e-50 201.8 124 76.6
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 3.9e-50 201.4 124 75.8
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 3.9e-50 201.4 125 73.6
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 5.1e-50 201.1 125 76.0
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 5.1e-50 201.1 125 75.2
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 5.1e-50 201.1 122 76.2
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 6.7e-50 200.7 125 74.4
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 6.7e-50 200.7 125 76.0
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 6.7e-50 200.7 125 76.0
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 6.7e-50 200.7 125 74.4
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 6.7e-50 200.7 124 76.6
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 8.7e-50 200.3 124 76.6
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 8.7e-50 200.3 124 73.4
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 1.1e-49 199.9 124 75.0
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 1.1e-49 199.9 124 72.6
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 1.5e-49 199.5 125 75.2
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 1.5e-49 199.5 124 76.6
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 1.5e-49 199.5 124 75.8
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 1.5e-49 199.5 123 72.4
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 1.9e-49 199.1 125 74.4
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 1.9e-49 199.1 124 74.2
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 2.5e-49 198.7 124 72.6
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 2.5e-49 198.7 124 75.0
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 2.5e-49 198.7 124 75.8
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 2.5e-49 198.7 124 75.8
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 2.5e-49 198.7 124 75.8
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 2.5e-49 198.7 124 76.6
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 3.3e-49 198.4 128 72.7
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 3.3e-49 198.4 128 72.7
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 3.3e-49 198.4 124 75.8
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 3.3e-49 198.4 124 74.2
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 3.3e-49 198.4 125 75.2
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 3.3e-49 198.4 124 72.6
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 4.3e-49 198.0 129 72.1
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 4.3e-49 198.0 124 75.8
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 4.3e-49 198.0 124 73.4
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 4.3e-49 198.0 124 75.8
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 5.7e-49 197.6 124 75.8
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 5.7e-49 197.6 124 74.2
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 7.4e-49 197.2 124 73.4
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 7.4e-49 197.2 124 73.4
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 7.4e-49 197.2 124 76.6
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 9.7e-49 196.8 124 72.6
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 1.3e-48 196.4 124 71.8
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 1.3e-48 196.4 124 74.2
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 1.6e-48 196.1 127 70.9
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 1.6e-48 196.1 127 70.9
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 1.6e-48 196.1 124 74.2
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 1.6e-48 196.1 124 71.8
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 2.2e-48 195.7 125 72.8
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 2.2e-48 195.7 124 74.2
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 2.2e-48 195.7 124 74.2
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 2.2e-48 195.7 124 71.8
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 4.8e-48 194.5 125 72.8
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 4.8e-48 194.5 124 74.2
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 4.8e-48 194.5 123 71.5
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 6.3e-48 194.1 122 72.1
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 8.2e-48 193.7 125 70.4
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 8.2e-48 193.7 125 72.8
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 8.2e-48 193.7 124 71.8
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 1.1e-47 193.4 124 71.8
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 1.1e-47 193.4 127 70.1
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.1e-47 193.4 124 70.2
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 1.4e-47 193.0 124 71.0
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 1.4e-47 193.0 124 70.2
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 1.8e-47 192.6 124 71.0
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.8e-47 192.6 123 69.9
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 3.1e-47 191.8 124 69.4
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 4.1e-47 191.4 124 70.2
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 5.3e-47 191.0 126 70.6
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 5.3e-47 191.0 124 72.6
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 9.0e-47 190.3 122 72.1
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 9.0e-47 190.3 125 72.0
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 1.2e-46 189.9 124 71.0
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 2.0e-46 189.1 123 69.9
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 2.0e-46 189.1 118 75.4
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 2.6e-46 188.7 125 71.2
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 3.4e-46 188.3 125 68.0
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 4.5e-46 188.0 125 71.2
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 7.7e-46 187.2 124 71.0
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 1.0e-45 186.8 117 73.5
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 1.0e-45 186.8 124 71.0
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 1.0e-45 186.8 123 71.5
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 1.3e-45 186.4 124 70.2
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.3e-45 186.4 125 70.4
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 1.7e-45 186.0 125 68.0
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 1.7e-45 186.0 122 68.9
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 2.9e-45 185.3 117 75.2
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 3.8e-45 184.9 125 69.6
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 3.8e-45 184.9 125 67.2
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 6.5e-45 184.1 124 71.0
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 1.9e-44 182.6 117 74.4
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 2.5e-44 182.2 124 66.1
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 2.5e-44 182.2 124 70.2
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 3.2e-44 181.8 125 67.2
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 5.5e-44 181.0 124 66.9
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 5.5e-44 181.0 124 66.1
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 9.4e-44 180.3 117 70.9
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 3.6e-43 178.3 113 73.5
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 1.8e-42 176.0 125 65.6
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 3.0e-42 175.3 123 65.9
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 3.0e-42 175.3 123 65.9
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 3.9e-42 174.9 122 66.4
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 6.7e-42 174.1 124 66.9
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 8.8e-42 173.7 124 63.7
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 5.7e-41 171.0 125 64.8
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 7.4e-41 170.6 123 64.2
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 4.8e-40 167.9 124 61.3
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 1.1e-39 166.8 123 62.6
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 1.4e-39 166.4 116 64.7
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 1.4e-39 166.4 119 62.2
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 3.1e-39 165.2 124 66.9
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 4.1e-39 164.9 122 63.1
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 1.5e-38 162.9 124 60.5
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 2.0e-38 162.5 115 68.7
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 3.4e-38 161.8 124 60.5
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 4.5e-38 161.4 122 63.1
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 3.6e-35 151.8 89 79.8
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 4.7e-35 151.4 110 60.9
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 7.9e-35 150.6 117 59.8
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 2.6e-33 145.6 123 55.3
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 1.8e-31 139.4 132 49.2
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 1.6e-30 136.3 124 54.0
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 1.0e-29 133.7 123 50.4
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 1.0e-29 133.7 131 47.3
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 4.2e-28 128.3 107 57.9
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 7.2e-28 127.5 123 53.7
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 1.8e-26 122.9 132 46.2
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 4.1e-23 111.7 123 47.2
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.6e-22 109.8 107 52.3
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 2.0e-22 109.4 116 49.1
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 2.2e-21 105.9 68 66.2
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 2.5e-20 102.4 123 43.9
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 4.0e-18 95.1 64 62.5
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 5.9e-14 81.3 58 60.3
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 1.5e-09 66.6 39 66.7


User provided reference genes

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