Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 0.0e+00 2410.9 1179 100.0
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 0.0e+00 1199.5 1178 53.1
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 1092.0 1181 48.2
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 2.4e-311 1072.4 1196 47.9
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 1.3e-299 1033.5 1233 45.4
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 2.8e-294 1015.8 1063 50.5
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 3.7e-291 1005.4 1192 46.0
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 6.4e-283 978.0 1126 46.8
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 9.2e-282 974.2 1185 44.8
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 3.5e-281 972.2 1209 44.9
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 1.3e-280 970.3 1185 44.6
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 3.9e-280 968.8 1193 45.6
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 3.9e-280 968.8 1185 45.3
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 5.6e-279 964.9 1182 45.6
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 1.6e-278 963.4 1193 45.2
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 8.0e-278 961.1 1187 45.7
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 7.5e-276 954.5 1199 44.8
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 1.3e-275 953.7 1172 45.1
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 1.7e-275 953.4 1193 45.2
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 4.9e-275 951.8 1189 45.2
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 4.9e-275 951.8 1193 44.9
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 4.9e-275 951.8 1192 44.3
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 2.0e-273 946.4 1179 44.4
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 2.7e-273 946.0 1186 44.8
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 5.0e-272 941.8 1195 44.7
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 2.8e-270 936.0 1201 45.0
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 1.1e-269 934.1 1198 44.5
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.8e-269 933.3 1198 44.4
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 1.8e-269 933.3 1273 42.7
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 6.8e-269 931.4 1187 44.5
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 7.5e-268 927.9 1199 44.4
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 1.3e-267 927.2 1198 44.6
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 1.3e-264 917.1 1191 44.5
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 2.3e-264 916.4 1198 44.0
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 3.0e-264 916.0 1198 44.1
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 5.1e-264 915.2 1186 44.0
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 2.8e-262 909.4 1199 43.5
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 6.2e-262 908.3 1182 43.9
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 7.6e-260 901.4 1192 42.3
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 9.9e-260 901.0 1190 42.7
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 3.8e-259 899.0 1191 43.6
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 6.4e-259 898.3 1176 42.5
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 1.0e-256 891.0 1189 42.6
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 2.5e-255 886.3 1190 41.8
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 2.8e-254 882.9 1190 42.0
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 2.8e-254 882.9 1210 42.4
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 3.6e-254 882.5 1193 42.2
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 4.7e-254 882.1 1192 42.1
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 1.1e-253 880.9 1202 41.8
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 1.2e-252 877.5 1193 42.7
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.9e-250 870.2 1061 44.2
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 3.2e-250 869.4 1182 42.6
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 1.6e-249 867.1 1191 40.7
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 5.1e-248 862.1 1182 42.1
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 2.4e-245 853.2 1201 40.8
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 2.0e-244 850.1 1182 40.8
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 1.9e-242 843.6 1162 42.6
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 5.4e-242 842.0 1197 40.9
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 1.6e-238 830.5 1210 41.1
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 4.8e-238 828.9 1186 40.2
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 3.2e-234 816.2 1051 43.5
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 1.0e-232 811.2 1193 39.9
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 1.1e-231 807.7 1183 41.8
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 3.3e-231 806.2 1181 41.3
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 1.2e-228 797.7 1170 41.2
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 4.5e-228 795.8 1195 40.0
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 1.3e-227 794.3 1178 40.4
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 3.8e-227 792.7 1180 40.2
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 2.2e-222 776.9 1186 38.8
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 4.1e-221 772.7 1186 39.0
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 6.9e-221 771.9 1183 38.4
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 1.1e-218 764.6 1192 38.7
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 1.2e-217 761.1 1197 38.3
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 7.9e-217 758.4 1184 39.0
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 1.8e-216 757.3 1183 38.1
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 1.9e-215 753.8 1184 37.9
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 1.9e-215 753.8 1064 41.4
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 9.7e-215 751.5 1183 38.0
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 3.4e-212 743.0 1192 37.7
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 1.0e-211 741.5 1183 37.6
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 1.0e-211 741.5 1184 37.8
CARHR141910 Cardamine hirsuta HOM05D004435 ORTHO05D005103 1.0e-195 688.3 1031 39.2
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 2.6e-191 673.7 1051 39.5
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 2.0e-188 664.1 1181 35.5
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 2.1e-185 654.1 1204 36.3
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 1.1e-181 641.7 1184 35.1
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 2.2e-166 590.9 1197 32.7
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 6.6e-163 579.3 1227 32.8
Hma1.2p1_0101F.1_g049270 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 3.3e-162 577.0 673 45.6
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 5.8e-159 566.2 1232 33.4
Aa31LG1G27950 Aethionema arabicum HOM05D004435 ORTHO05D005103 5.1e-115 420.2 753 33.5
SEGI_19519 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 3.9e-107 394.0 947 30.6
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 3.9e-107 394.0 566 40.6
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 3.7e-105 387.5 605 39.2
TPR.G20227 Trifolium pratense HOM05D004435 ORTHO05D005103 1.8e-99 368.6 436 45.4
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 3.2e-85 321.2 1145 27.3
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 1.0e-83 316.2 566 35.3
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 1.3e-78 299.3 1253 23.8
BcaC02g12668 Brassica carinata HOM05D004435 ORTHO05D005103 6.8e-51 207.2 189 56.6
Aa31LG1G27960 Aethionema arabicum HOM05D004435 ORTHO05D005103 2.0e-47 195.7 190 53.7
Cpa.g.c42981 Carica papaya HOM05D004435 ORTHO05D005103 5.4e-32 144.4 250 34.8
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.0e-30 140.2 192 41.7
Psat1g001920 Pisum sativum HOM05D004435 ORTHO05D005103 1.1e-27 130.2 223 36.8
Psat5g173880 Pisum sativum HOM05D004435 ORTHO05D005103 3.4e-26 125.2 179 36.9
Psat5g173920 Pisum sativum HOM05D004435 ORTHO05D005103 3.4e-26 125.2 179 36.9
AagrBONN_evm.TU.Sc2ySwM_228.2860 Anthoceros agrestis HOM05D004435 ORTHO05D005103 5.1e-22 111.3 260 29.6
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 5.1e-22 111.3 198 37.4
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 6.6e-22 110.9 156 42.9
MapolyY_B0006 Marchantia polymorpha HOM05D004435 ORTHO05D005103 1.1e-19 103.6 300 28.7
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 1.2e-18 100.1 162 39.5
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 2.9e-17 95.5 489 22.7
BcaNung07057 Brassica carinata HOM05D004435 ORTHO05D005103 9.3e-16 90.5 166 36.1
FAN10G3206 Fragaria x ananassa HOM05D004435 ORTHO05D005103 6.0e-15 87.8 103 45.6
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 7.9e-15 87.4 158 36.7
FAN10G3182 Fragaria x ananassa HOM05D004435 ORTHO05D005103 7.9e-15 87.4 103 45.6
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 1.0e-14 87.0 158 35.4
Hma1.2p1_0101F.1_g049260 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 3.9e-14 85.1 77 59.7
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.8e-12 79.0 181 34.8
Os01g0552000 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 5.3e-11 74.7 209 25.8
SEGI_36456 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 6.9e-11 74.3 123 32.5
Psat6g059000 Pisum sativum HOM05D002708 ORTHO05D003516 1.3e-06 60.1 71 45.1


User provided reference genes

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