Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 0.0e+00 1392.5 772 100.0
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 2.2e-223 779.6 815 59.9
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 3.5e-205 719.2 811 57.7
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.7e-204 716.8 812 57.5
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 2.0e-200 703.4 814 56.5
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 4.9e-199 698.7 826 55.1
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 9.2e-198 694.5 819 54.8
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 3.5e-197 692.6 797 56.6
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 5.6e-195 685.3 834 53.5
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 2.8e-194 682.9 787 55.5
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 3.1e-193 679.5 803 54.3
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 6.8e-193 678.3 798 56.1
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 9.8e-192 674.5 796 55.8
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 3.0e-188 662.9 786 55.0
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 4.7e-186 655.6 818 52.8
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 1.4e-185 654.1 819 53.1
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 1.8e-185 653.7 811 54.1
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 1.8e-185 653.7 955 48.4
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 3.1e-185 652.9 816 53.8
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 8.9e-185 651.4 818 53.2
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 3.4e-184 649.4 812 53.1
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 4.9e-183 645.6 796 51.6
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 1.1e-182 644.4 813 53.1
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 4.6e-181 639.0 816 53.4
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 1.0e-180 637.9 818 51.8
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 3.9e-180 636.0 813 51.8
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 5.1e-180 635.6 723 55.9
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 1.5e-179 634.0 782 53.7
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.6e-178 630.6 822 53.3
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 1.4e-177 627.5 817 52.8
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 3.4e-176 622.9 855 51.2
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 4.4e-176 622.5 807 51.7
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 5.4e-174 615.5 817 52.5
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 1.2e-173 614.4 792 55.3
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 2.3e-172 610.1 821 51.9
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 2.5e-171 606.7 810 50.7
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 7.3e-171 605.1 822 51.9
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 7.3e-171 605.1 790 50.6
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 7.3e-171 605.1 798 52.1
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.6e-170 604.0 784 52.9
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 4.0e-169 599.4 815 52.1
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 1.5e-168 597.4 812 52.3
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 4.4e-168 595.9 819 51.5
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 9.9e-168 594.7 808 51.4
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 9.9e-168 594.7 822 51.9
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 1.3e-167 594.3 822 51.9
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 1.7e-167 594.0 825 50.1
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 8.4e-167 591.7 807 50.3
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 9.3e-166 588.2 785 51.0
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 4.6e-165 585.9 810 49.5
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 1.3e-164 584.3 829 48.1
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 3.0e-164 583.2 806 49.8
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.9e-164 582.8 846 50.2
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 1.9e-163 580.5 789 50.1
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 2.5e-163 580.1 799 49.2
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 5.6e-163 578.9 793 50.6
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 2.8e-162 576.6 809 48.9
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 3.6e-162 576.2 793 49.4
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 4.8e-162 575.9 800 50.2
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 4.0e-161 572.8 799 50.2
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 9.0e-161 571.6 804 47.9
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 2.0e-160 570.5 792 50.8
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.3e-159 567.8 780 49.6
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 1.4e-158 564.3 801 48.4
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 1.2e-157 561.2 801 48.4
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 5.6e-155 552.4 827 48.0
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 1.6e-154 550.8 821 48.1
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.1e-154 550.4 786 49.7
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 8.1e-154 548.5 790 49.5
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 1.1e-153 548.1 794 48.2
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 1.8e-153 547.4 806 48.6
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 1.5e-152 544.3 717 50.9
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 1.7e-151 540.8 708 52.4
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 2.9e-151 540.0 806 47.3
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 5.1e-148 529.3 805 46.6
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 6.7e-148 528.9 814 47.8
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 6.7e-148 528.9 793 46.8
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 2.8e-146 523.5 801 47.8
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 1.8e-145 520.8 798 46.4
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 3.1e-145 520.0 534 59.6
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 1.5e-144 517.7 808 46.4
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 5.0e-143 512.7 822 45.7
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 6.5e-143 512.3 837 47.1
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 4.2e-142 509.6 785 48.2
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 6.1e-141 505.8 807 47.2
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 1.8e-140 504.2 793 47.5
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 1.9e-139 500.7 818 46.2
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 7.4e-139 498.8 795 45.7
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 9.7e-139 498.4 785 45.5
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 3.7e-138 496.5 878 43.2
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 5.3e-137 492.7 799 47.1
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 6.9e-137 492.3 779 43.8
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 1.2e-136 491.5 624 52.1
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 2.0e-136 490.7 779 43.9
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 1.3e-135 488.0 813 47.4
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 4.2e-134 483.0 615 52.7
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 2.7e-133 480.3 615 52.5
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 4.3e-131 473.0 791 43.7
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 4.3e-131 473.0 769 43.3
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 7.4e-131 472.2 783 44.6
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 2.8e-130 470.3 783 44.4
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 4.8e-130 469.5 783 44.4
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 2.0e-128 464.2 745 44.4
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 4.5e-128 463.0 804 43.9
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 7.7e-128 462.2 781 44.0
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 1.0e-127 461.8 811 42.9
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 1.1e-126 458.4 781 43.5
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 1.2e-125 454.9 697 46.6
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 7.9e-125 452.2 540 53.0
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 1.8e-124 451.1 709 46.8
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 3.0e-124 450.3 781 43.1
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 5.2e-124 449.5 776 41.1
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.5e-123 448.0 797 43.9
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.0e-123 447.6 609 49.6
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 6.3e-122 442.6 739 42.6
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 1.6e-120 438.0 850 41.1
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 1.3e-119 434.9 751 42.5
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 1.7e-119 434.5 814 41.9
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 6.5e-119 432.6 792 43.3
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 3.2e-118 430.3 774 41.6
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 3.2e-118 430.3 787 43.1
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 7.2e-118 429.1 773 40.9
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 3.6e-117 426.8 789 42.0
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 5.2e-116 422.9 787 39.9
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 1.5e-115 421.4 793 42.0
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 1.7e-114 417.9 692 43.8
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 1.2e-112 411.8 776 39.2
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 2.0e-112 411.0 647 45.1
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 2.2e-111 407.5 703 42.2
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 5.5e-110 402.9 788 40.4
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 2.8e-106 390.6 795 41.3
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 8.3e-98 362.5 400 59.5
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 2.0e-91 341.3 504 46.8
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 4.1e-89 333.6 614 41.0
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 1.6e-88 331.6 349 56.4
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 2.8e-85 320.9 385 53.8
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 3.1e-84 317.4 705 37.7
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 1.5e-83 315.1 750 35.5
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 9.2e-73 279.3 380 49.2
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 1.3e-71 275.4 387 47.8
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 7.6e-59 233.0 353 44.5
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 3.2e-57 227.6 735 31.4
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 2.1e-53 214.9 340 46.5
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 2.8e-53 214.5 412 40.8
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 2.0e-51 208.4 252 53.2
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.1e-49 202.6 411 42.3
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 1.3e-45 189.1 317 41.3
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 2.6e-43 181.4 205 55.6
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 1.4e-36 159.1 145 62.8
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 3.5e-32 144.4 185 50.8
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 3.1e-28 131.3 145 55.2
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 1.5e-27 129.0 183 51.9
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 1.6e-21 109.0 251 35.9
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 6.3e-21 107.1 120 53.3
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 3.1e-20 104.8 359 27.6
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 5.3e-20 104.0 107 59.8
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 8.5e-18 96.7 175 39.4
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 4.6e-16 90.9 108 57.4
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 7.4e-14 83.6 299 30.4
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 3.7e-13 81.3 77 55.8
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 1.8e-12 79.0 308 30.5
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.1e-12 78.2 87 59.8
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 6.9e-12 77.0 70 67.1
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 4.5e-11 74.3 231 30.3
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 1.3e-10 72.8 208 29.3
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 6.5e-10 70.5 67 58.2
CBR_g40298 Chara braunii HOM05D003721 ORTHO05D004303 1.6e-08 65.9 133 35.3
Actinidia10077 Actinidia chinensis HOM05D003721 ORTHO05D004303 2.3e-07 62.0 162 38.9


User provided reference genes

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