Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008565 Daucus carota HOM05D003683 ORTHO05D004143 6.0e-33 143.7 77 100.0
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 1.3e-11 72.8 65 64.6
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 1.4e-10 69.3 65 63.1
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.2e-09 66.2 66 59.1
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.1e-09 65.5 63 61.9
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 2.7e-09 65.1 63 60.3
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 4.6e-09 64.3 59 55.9
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 4.6e-09 64.3 59 55.9
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 4.6e-09 64.3 59 55.9
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 4.6e-09 64.3 63 60.3
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 1.4e-08 62.8 63 61.9
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 2.3e-08 62.0 52 63.5
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 3.0e-08 61.6 59 52.5
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 3.0e-08 61.6 50 64.0
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 3.0e-08 61.6 59 61.0
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 5.1e-08 60.8 54 61.1
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 5.1e-08 60.8 63 57.1
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 6.7e-08 60.5 52 59.6
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 1.1e-07 59.7 56 55.4
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 1.1e-07 59.7 59 54.2
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.5e-07 59.3 52 59.6
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 1.5e-07 59.3 59 52.5
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.5e-07 59.3 52 57.7
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 2.0e-07 58.9 60 55.0
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 2.0e-07 58.9 59 50.8
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 2.0e-07 58.9 59 50.8
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 2.0e-07 58.9 59 50.8
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 2.6e-07 58.5 59 50.8
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 2.6e-07 58.5 59 50.8
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.4e-07 57.8 46 67.4
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 4.4e-07 57.8 61 49.2
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 4.4e-07 57.8 60 60.0
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 5.7e-07 57.4 63 52.4
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 5.7e-07 57.4 65 52.3
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 5.7e-07 57.4 62 56.5
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 7.4e-07 57.0 63 49.2
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 7.4e-07 57.0 63 49.2
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 7.4e-07 57.0 58 60.3
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 7.4e-07 57.0 69 49.3
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 7.4e-07 57.0 61 55.7
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 9.7e-07 56.6 40 72.5
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 9.7e-07 56.6 70 47.1
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 9.7e-07 56.6 76 48.7
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 9.7e-07 56.6 59 55.9
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.3e-06 56.2 59 55.9
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.3e-06 56.2 78 50.0
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.3e-06 56.2 46 65.2
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.3e-06 56.2 46 65.2
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 1.3e-06 56.2 59 54.2
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.3e-06 56.2 44 65.9
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 2.2e-06 55.5 45 64.4
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 2.2e-06 55.5 60 53.3
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 2.2e-06 55.5 59 52.5
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 2.2e-06 55.5 76 47.4
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 2.8e-06 55.1 63 46.0
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 2.8e-06 55.1 63 46.0
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 2.8e-06 55.1 63 46.0
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 2.8e-06 55.1 56 58.9
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 2.8e-06 55.1 61 55.7
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 3.7e-06 54.7 56 53.6
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 3.7e-06 54.7 52 57.7
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 3.7e-06 54.7 61 52.5
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 3.7e-06 54.7 43 67.4
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 4.8e-06 54.3 52 59.6
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.8e-06 54.3 65 53.8
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 4.8e-06 54.3 65 53.8
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 4.8e-06 54.3 66 45.5
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 4.8e-06 54.3 50 60.0
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 4.8e-06 54.3 65 52.3
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 4.8e-06 54.3 64 51.6
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 6.3e-06 53.9 58 53.4
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 6.3e-06 53.9 62 53.2
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 6.3e-06 53.9 61 54.1
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 6.3e-06 53.9 64 51.6
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 8.2e-06 53.5 42 69.0
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 8.2e-06 53.5 40 70.0
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 8.2e-06 53.5 46 63.0
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 8.2e-06 53.5 61 55.7
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 8.2e-06 53.5 40 70.0
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 8.2e-06 53.5 41 70.7
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 8.2e-06 53.5 39 69.2
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 8.2e-06 53.5 59 55.9
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 8.2e-06 53.5 59 55.9


User provided reference genes

Program Settings