Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 1.0e-224 783.1 391 100.0
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 1.4e-173 613.2 387 77.0
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 1.7e-171 606.3 391 76.7
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 1.8e-165 586.3 391 74.9
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 1.2e-164 583.6 391 76.0
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 1.2e-164 583.6 391 73.7
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 2.9e-163 578.9 391 74.2
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 4.9e-163 578.2 391 73.1
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 9.2e-162 573.9 391 73.9
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 2.5e-159 565.8 392 71.4
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 6.8e-157 557.8 391 70.6
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 1.2e-156 557.0 390 69.2
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 1.5e-156 556.6 391 70.6
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 2.0e-156 556.2 391 70.3
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 2.0e-156 556.2 391 70.3
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 4.4e-156 555.1 391 70.3
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 9.8e-156 553.9 391 71.1
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 4.9e-155 551.6 386 71.0
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 6.4e-155 551.2 390 67.9
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 8.3e-155 550.8 409 67.2
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 1.1e-154 550.4 409 67.7
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 1.1e-154 550.4 390 69.5
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 1.4e-154 550.1 409 68.0
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 7.0e-154 547.7 390 69.0
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 2.7e-153 545.8 376 70.5
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 2.7e-153 545.8 388 70.1
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 6.0e-153 544.7 392 70.9
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 1.3e-152 543.5 391 68.8
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 2.3e-152 542.7 388 69.3
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 6.6e-152 541.2 391 68.8
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 8.6e-152 540.8 390 67.7
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 1.5e-151 540.0 406 67.2
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 3.3e-151 538.9 391 67.0
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 4.3e-151 538.5 390 68.2
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 4.3e-151 538.5 389 68.4
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 2.8e-150 535.8 409 65.0
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 2.8e-150 535.8 387 71.1
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 6.2e-150 534.6 392 68.1
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 8.1e-150 534.3 393 67.9
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 1.4e-149 533.5 391 69.6
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 2.6e-148 529.3 370 71.9
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 2.6e-148 529.3 391 68.8
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 3.4e-148 528.9 368 72.3
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 4.4e-148 528.5 393 70.2
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 5.8e-148 528.1 391 68.3
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 9.8e-148 527.3 366 70.8
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 9.8e-148 527.3 391 68.3
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 1.9e-146 523.1 391 68.8
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 3.2e-146 522.3 391 67.0
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 5.4e-146 521.5 392 67.9
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 7.1e-146 521.2 365 71.5
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 2.1e-145 519.6 391 67.5
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 3.0e-144 515.8 393 67.7
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 3.9e-144 515.4 391 67.8
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 5.1e-144 515.0 367 70.3
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 6.6e-144 514.6 392 66.3
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.1e-143 513.8 393 67.4
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 3.3e-143 512.3 393 66.7
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 4.3e-143 511.9 401 64.6
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 4.3e-143 511.9 379 67.8
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 7.3e-143 511.1 393 67.4
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 9.5e-143 510.8 392 66.1
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.2e-142 510.4 394 65.7
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 3.6e-142 508.8 369 68.3
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 4.7e-142 508.4 424 63.9
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 4.7e-142 508.4 389 66.8
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 6.2e-142 508.1 391 66.8
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 1.1e-141 507.3 393 66.4
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 2.3e-141 506.1 393 65.9
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 3.1e-141 505.8 393 66.7
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 4.0e-141 505.4 391 66.2
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 1.2e-140 503.8 391 66.8
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 3.4e-140 502.3 415 63.6
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 3.4e-140 502.3 416 62.3
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 4.4e-140 501.9 399 65.4
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 5.8e-140 501.5 386 67.1
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 9.9e-140 500.7 386 67.1
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 3.7e-139 498.8 391 65.0
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 3.2e-138 495.7 366 67.8
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 4.1e-138 495.4 390 63.8
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 5.4e-138 495.0 393 65.9
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 1.0e-136 490.7 392 63.8
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 1.0e-136 490.7 352 70.5
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 3.9e-136 488.8 391 63.2
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 1.5e-135 486.9 392 63.0
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 1.5e-135 486.9 392 63.3
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 3.1e-133 479.2 377 65.8
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 3.4e-132 475.7 392 62.2
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 3.4e-132 475.7 392 62.2
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 3.8e-131 472.2 390 61.5
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 8.1e-126 454.5 343 66.2
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 9.9e-124 447.6 419 56.6
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 1.3e-123 447.2 323 67.5
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 3.8e-123 445.7 349 65.0
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 1.1e-122 444.1 336 66.1
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 4.5e-116 422.2 342 60.5
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 8.7e-112 407.9 379 56.7
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 4.3e-111 405.6 265 72.8
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 3.3e-103 379.4 253 72.7
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.6e-97 360.5 305 60.7
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 4.6e-97 359.0 390 50.3
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.4e-90 337.4 265 66.0
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 1.3e-86 324.3 325 53.8
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 1.2e-84 317.8 203 75.9
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 5.0e-83 312.4 262 60.7
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 1.6e-81 307.4 191 75.4
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 7.4e-79 298.5 226 66.8
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 2.5e-74 283.5 162 84.6
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 6.7e-72 275.4 279 48.4
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 4.4e-71 272.7 233 62.7
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 2.6e-63 246.9 188 63.3
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 3.7e-62 243.0 177 66.7
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 7.2e-58 228.8 132 82.6
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 7.7e-52 208.8 217 47.9
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 1.3e-51 208.0 212 48.1
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 9.5e-50 201.8 189 57.1
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 6.1e-49 199.1 115 78.3
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 3.4e-39 166.8 124 69.4
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 5.8e-39 166.0 132 62.9
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 7.5e-39 165.6 133 60.2
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 8.3e-38 162.2 133 59.4
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 7.8e-36 155.6 160 48.8
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 1.7e-35 154.5 200 43.0
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 3.3e-34 150.2 243 38.3
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 1.6e-28 131.3 84 71.4
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 1.7e-27 127.9 183 43.2
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.9e-26 124.4 135 48.1
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 6.8e-24 115.9 109 53.2
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 3.4e-23 113.6 75 68.0
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 7.6e-23 112.5 63 84.1
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 4.1e-21 106.7 113 50.4
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 2.1e-20 104.4 71 74.6
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 6.9e-16 89.4 93 57.0
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 4.2e-13 80.1 67 62.7
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 6.6e-11 72.8 47 76.6
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 1.9e-10 71.2 105 38.1
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 1.6e-09 68.2 47 72.3


User provided reference genes

Program Settings