Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 1.5e-95 352.8 179 100.0
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 4.9e-78 294.7 175 84.0
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 2.4e-77 292.4 178 82.6
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 3.5e-76 288.5 179 81.0
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 4.3e-74 281.6 179 78.8
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 5.6e-74 281.2 179 80.4
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 5.6e-74 281.2 179 77.7
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 5.6e-74 281.2 179 81.6
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 7.3e-74 280.8 179 78.8
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 7.3e-74 280.8 179 78.8
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 2.8e-73 278.9 179 78.8
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 2.8e-73 278.9 179 77.1
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 4.8e-73 278.1 179 76.0
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 8.1e-73 277.3 179 76.5
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 8.1e-73 277.3 178 77.5
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.1e-72 276.9 175 80.0
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 2.4e-72 275.8 177 78.5
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 2.4e-72 275.8 180 77.2
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 4.0e-72 275.0 178 76.4
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 5.3e-72 274.6 179 75.4
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 5.3e-72 274.6 178 78.1
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 6.9e-72 274.2 179 75.4
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 9.0e-72 273.9 179 77.1
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 1.5e-71 273.1 179 75.4
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 1.5e-71 273.1 177 75.7
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.5e-71 273.1 169 79.9
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 2.0e-71 272.7 169 80.5
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 2.0e-71 272.7 179 77.1
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 2.6e-71 272.3 178 77.0
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.6e-71 272.3 178 79.8
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 3.4e-71 271.9 179 75.4
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 9.9e-71 270.4 177 75.7
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 9.9e-71 270.4 179 76.0
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.3e-70 270.0 179 74.9
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 1.3e-70 270.0 177 75.1
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.7e-70 269.6 179 74.9
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 1.7e-70 269.6 174 78.2
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 2.2e-70 269.2 173 77.5
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 2.9e-70 268.9 179 76.0
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 4.9e-70 268.1 179 73.2
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 4.9e-70 268.1 178 74.7
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 4.9e-70 268.1 179 73.7
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 6.4e-70 267.7 179 76.0
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 8.4e-70 267.3 179 74.9
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 8.4e-70 267.3 179 74.9
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 8.4e-70 267.3 178 75.3
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.1e-69 266.9 179 74.9
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.1e-69 266.9 179 75.4
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.4e-69 266.5 179 74.9
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.9e-69 266.2 179 74.3
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 1.9e-69 266.2 171 78.4
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 1.9e-69 266.2 171 77.2
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 2.4e-69 265.8 178 77.0
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.4e-69 265.8 179 74.9
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.4e-69 265.8 179 74.9
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 4.2e-69 265.0 179 74.3
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.2e-69 265.0 179 74.3
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 4.2e-69 265.0 175 75.4
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 5.4e-69 264.6 171 76.0
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 5.4e-69 264.6 179 73.7
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 5.4e-69 264.6 179 74.3
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 7.1e-69 264.2 179 73.7
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 7.1e-69 264.2 179 74.3
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 7.1e-69 264.2 179 74.9
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 7.1e-69 264.2 179 74.9
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 9.3e-69 263.8 176 73.9
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 9.3e-69 263.8 178 72.5
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 9.3e-69 263.8 179 73.7
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 1.2e-68 263.5 179 73.2
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 1.2e-68 263.5 179 74.3
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 2.7e-68 262.3 179 72.1
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 2.7e-68 262.3 179 73.2
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 6.0e-68 261.2 169 78.1
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 7.9e-68 260.8 175 77.1
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 7.9e-68 260.8 179 74.3
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 7.9e-68 260.8 179 73.7
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.8e-67 259.6 179 73.2
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 1.8e-67 259.6 179 71.5
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 2.3e-67 259.2 177 74.6
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 2.3e-67 259.2 177 74.0
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 3.0e-67 258.8 168 78.6
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 3.0e-67 258.8 178 70.8
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 6.7e-67 257.7 179 73.7
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 6.7e-67 257.7 177 74.6
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 8.7e-67 257.3 179 73.2
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 1.1e-66 256.9 179 73.7
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 1.5e-66 256.5 173 75.7
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 1.9e-66 256.1 169 75.7
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 1.9e-66 256.1 174 73.0
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 5.6e-66 254.6 175 72.0
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 5.6e-66 254.6 171 74.9
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 1.3e-65 253.4 175 71.4
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 1.6e-65 253.1 175 72.0
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 1.6e-65 253.1 205 64.9
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 2.1e-65 252.7 168 77.4
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 6.2e-65 251.1 175 70.9
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 8.1e-65 250.8 174 73.6
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 1.1e-64 250.4 175 70.9
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 1.4e-64 250.0 179 69.3
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.4e-64 250.0 219 63.5
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 1.8e-64 249.6 169 74.0
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 1.8e-64 249.6 171 71.9
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 3.1e-64 248.8 169 74.6
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 4.0e-64 248.4 193 65.8
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 5.3e-64 248.1 171 70.8
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 5.3e-64 248.1 176 73.3
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 1.2e-63 246.9 171 71.9
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 1.2e-63 246.9 165 75.8
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 1.5e-63 246.5 179 72.1
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 2.0e-63 246.1 177 70.6
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 3.4e-63 245.4 169 72.2
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 1.3e-62 243.4 175 68.6
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.7e-62 243.0 160 75.0
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.7e-62 243.0 157 78.3
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 4.9e-62 241.5 212 62.7
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 6.5e-62 241.1 172 72.7
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 6.5e-62 241.1 172 73.3
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 8.4e-62 240.7 178 68.5
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 2.5e-61 239.2 169 69.8
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 3.2e-61 238.8 169 69.2
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 2.1e-60 236.1 172 70.9
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 2.1e-60 236.1 175 67.4
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 3.0e-59 232.3 178 69.7
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 4.0e-56 221.9 147 75.5
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 3.8e-54 215.3 150 72.7
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 1.1e-53 213.8 150 72.0
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 2.5e-53 212.6 169 65.1
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 4.8e-49 198.4 179 54.7
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 1.4e-48 196.8 120 84.2
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 7.7e-47 191.0 129 78.3
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.0e-46 190.7 170 62.9
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 1.3e-46 190.3 171 62.0
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 2.2e-46 189.5 179 53.1
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 2.7e-44 182.6 168 54.2
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 4.6e-44 181.8 171 52.6
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 3.0e-43 179.1 117 81.2
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 2.0e-42 176.4 121 75.2
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 1.7e-41 173.3 165 52.1
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 2.5e-37 159.5 222 41.9
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.6e-36 156.8 154 56.5
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 2.7e-36 156.0 161 51.6
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 1.0e-35 154.1 170 51.2
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 4.4e-34 148.7 86 84.9
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.3e-33 147.1 188 50.0
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 1.7e-33 146.7 105 70.5
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 3.7e-33 145.6 161 49.7
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 6.3e-33 144.8 83 83.1
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 2.0e-31 139.8 83 80.7
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 3.2e-29 132.5 98 69.4
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 8.8e-27 124.4 142 48.6
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.6e-26 122.9 89 67.4
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.6e-26 122.9 93 65.6
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 3.1e-24 115.9 117 56.4
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 3.5e-23 112.5 89 62.9
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 4.5e-23 112.1 97 58.8
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 2.2e-22 109.8 75 74.7
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 4.7e-20 102.1 82 63.4
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 4.0e-19 99.0 144 44.4
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 4.1e-16 89.0 218 34.4
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 1.1e-13 80.9 71 59.2
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 1.0e-11 74.3 54 63.0
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 2.6e-10 69.7 74 54.1
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 7.5e-10 68.2 146 34.9
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 1.4e-08 63.9 44 65.9
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 2.0e-07 60.1 42 66.7
CDE04G0800 Ceratophyllum demersum HOM05D000328 ORTHO05D000191 5.0e-06 55.5 47 53.2


User provided reference genes

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