Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008384 Daucus carota HOM05D002065 ORTHO05D002050 7.7e-132 473.8 233 100.0
DCAR_008386 Daucus carota HOM05D002065 ORTHO05D002050 3.0e-99 365.5 241 78.8
DCAR_008381 Daucus carota HOM05D002065 ORTHO05D002050 2.2e-86 322.8 225 75.1
DCAR_008383 Daucus carota HOM05D002065 ORTHO05D002050 9.6e-58 227.6 199 57.8
DCAR_008380 Daucus carota HOM05D002065 ORTHO05D002050 1.5e-55 220.3 202 54.5
DCAR_020516 Daucus carota HOM05D002065 ORTHO05D002050 1.3e-51 207.2 237 47.3
DCAR_019578 Daucus carota HOM05D002065 ORTHO05D035029 1.0e-38 164.5 215 41.4
DCAR_019582 Daucus carota HOM05D002065 ORTHO05D002050 6.7e-35 151.8 185 45.4
DCAR_019579 Daucus carota HOM05D002065 ORTHO05D002050 4.2e-29 132.5 210 41.4
DCAR_008382 Daucus carota HOM05D002065 ORTHO05D175199 3.6e-20 102.8 110 53.6
Lj8P166T75 Lonicera japonica HOM05D002065 ORTHO05D002050 1.4e-19 100.9 161 37.9
TAR629G2752 Trochodendron aralioides HOM05D002065 ORTHO05D002050 2.8e-17 93.2 172 34.3
DCAR_022527 Daucus carota HOM05D002065 ORTHO05D002050 8.2e-17 91.7 189 36.5
RhsimUnG0253100 Rhododendron simsii HOM05D002065 ORTHO05D002050 8.2e-17 91.7 192 32.8
MSTRG.14416 Avicennia marina HOM05D002065 ORTHO05D002050 1.4e-16 90.9 194 35.6
Hma1.2p1_1869F.1_g306050 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 3.1e-16 89.7 164 37.8
Actinidia35318 Actinidia chinensis HOM05D000018 ORTHO05D001766 4.1e-16 89.4 156 37.8
Migut.M01810 Erythranthe guttata HOM05D002065 ORTHO05D002050 1.6e-15 87.4 193 35.2
Lsat_1_v5_gn_3_120800 Lactuca sativa HOM05D002065 ORTHO05D002050 2.0e-15 87.0 151 36.4
Lj8C77T4 Lonicera japonica HOM05D002065 ORTHO05D002050 3.5e-15 86.3 189 30.7
Dinv40711 Davidia involucrata HOM05D002065 ORTHO05D001766 5.9e-15 85.5 151 39.1
Cc05_g13270 Coffea canephora HOM05D002065 ORTHO05D002050 7.7e-15 85.1 169 36.1
Dinv22303 Davidia involucrata HOM05D002065 ORTHO05D002050 1.7e-14 84.0 154 35.1
DCAR_020515 Daucus carota HOM05D002065 ORTHO05D002050 2.9e-14 83.2 179 37.4
Lsat_1_v5_gn_5_5781 Lactuca sativa HOM05D002065 ORTHO05D002050 2.9e-14 83.2 183 33.9
Lj8C77T5 Lonicera japonica HOM05D002065 ORTHO05D002050 1.1e-13 81.3 149 35.6
Cpa.g.c26548.3 Carica papaya HOM05D002065 ORTHO05D002050 1.9e-13 80.5 176 34.7
Hma1.2p1_1869F.1_g306060 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 1.9e-13 80.5 187 31.6
Haze_09617 Corylus avellana HOM05D002065 ORTHO05D002050 2.5e-13 80.1 199 31.2
Cfa020412 Carpinus fangiana HOM05D002065 ORTHO05D002050 4.2e-13 79.3 165 36.4
SGA_v2.0_scaffold27G11640 Striga asiatica HOM05D002065 ORTHO05D002050 4.2e-13 79.3 165 35.2
Cfa020411 Carpinus fangiana HOM05D002065 ORTHO05D002050 5.5e-13 79.0 185 31.9
Haze_09616 Corylus avellana HOM05D002065 ORTHO05D002050 5.5e-13 79.0 192 34.9
DCAR_008387 Daucus carota HOM05D059228 ORTHO05D002050 7.2e-13 78.6 217 31.8
Nn1g03652 Nelumbo nucifera HOM05D002065 ORTHO05D002050 9.4e-13 78.2 177 35.6
Oeu042915.1 Olea europaea HOM05D002065 ORTHO05D002050 1.2e-12 77.8 137 40.1
Aqoxy4G02007 Aquilegia oxysepala HOM05D002065 ORTHO05D002050 1.6e-12 77.4 193 33.7
DCAR_022526 Daucus carota HOM05D002065 ORTHO05D002050 1.6e-12 77.4 190 31.6
TAR626G1743 Trochodendron aralioides HOM05D002065 ORTHO05D002050 1.6e-12 77.4 205 31.2
Hma1.2p1_1564F.1_g290830 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 3.6e-12 76.3 182 33.5
Oeu025507.1 Olea europaea HOM05D002065 ORTHO05D002050 6.1e-12 75.5 152 38.2
Oeu062613.1 Olea europaea HOM05D002065 ORTHO05D002050 6.1e-12 75.5 192 32.8
SalBow8G3023 Salvia bowleyana HOM05D002065 ORTHO05D002050 6.1e-12 75.5 191 34.6
MELO3C018104.2 Cucumis melo HOM05D002065 ORTHO05D002050 8.0e-12 75.1 141 33.3
DCAR_022525 Daucus carota HOM05D002065 ORTHO05D002050 8.0e-12 75.1 203 29.6
PSO017G0621 Papaver somniferum HOM05D002065 ORTHO05D002050 8.0e-12 75.1 143 32.2
Oeu025506.1 Olea europaea HOM05D002065 ORTHO05D002050 1.0e-11 74.7 152 37.5
Actinidia09932 Actinidia chinensis HOM05D002065 ORTHO05D002050 1.4e-11 74.3 163 37.4
Eucgr.F00981 Eucalyptus grandis HOM05D002065 ORTHO05D002050 1.4e-11 74.3 193 33.2
Oeu025495.1 Olea europaea HOM05D002065 ORTHO05D002050 1.4e-11 74.3 152 37.5
ClCG05G014750 Citrullus lanatus HOM05D002065 ORTHO05D002050 3.0e-11 73.2 142 34.5
FAN16G0462 Fragaria x ananassa HOM05D002065 ORTHO05D002050 3.0e-11 73.2 191 30.9
TAR626G0982 Trochodendron aralioides HOM05D002065 ORTHO05D002050 3.0e-11 73.2 153 35.3
BcaC05g28309 Brassica carinata HOM05D002065 ORTHO05D002050 4.0e-11 72.8 212 29.7
C05p43700 Brassica napus HOM05D002065 ORTHO05D002050 4.0e-11 72.8 212 29.7
Oeu025490.1 Olea europaea HOM05D002065 ORTHO05D002050 5.2e-11 72.4 183 36.1
Sc01g0007380 Simmondsia chinensis HOM05D002065 ORTHO05D002050 5.2e-11 72.4 173 31.8
MD11G1225800 Malus domestica HOM05D002065 ORTHO05D002050 1.2e-10 71.2 204 31.9
Nitab4.5_0000092g0090 Nicotiana tabacum HOM05D002065 ORTHO05D002050 1.2e-10 71.2 212 29.7
Sopen12g001210 Solanum pennellii HOM05D002065 ORTHO05D002050 1.2e-10 71.2 164 32.3
CANSAT64G1415 Cannabis sativa HOM05D002065 ORTHO05D002050 2.0e-10 70.5 198 31.8
MD03G1210900 Malus domestica HOM05D002065 ORTHO05D002050 2.0e-10 70.5 198 32.8
FAN21G3193 Fragaria x ananassa HOM05D002065 ORTHO05D002050 2.6e-10 70.1 191 30.4
MBI18_g44238_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 2.6e-10 70.1 170 35.9
AT3G20590 Arabidopsis thaliana HOM05D002065 ORTHO05D002050 3.3e-10 69.7 184 32.1
Sp3g18640 Schrenkiella parvula HOM05D002065 ORTHO05D002050 3.3e-10 69.7 206 30.1
MBI18_g44237_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 5.7e-10 68.9 170 34.1
QL08p013247 Quercus lobata HOM05D002065 ORTHO05D002050 5.7e-10 68.9 169 30.8
RcHm_v2.0_Chr5g0037701 Rosa chinensis HOM05D002065 ORTHO05D002050 5.7e-10 68.9 191 28.8
Solyc12g005230.3 Solanum lycopersicum HOM05D001540 ORTHO05D001520 5.7e-10 68.9 197 31.5
FvH4_3g21890 Fragaria vesca HOM05D002065 ORTHO05D002050 7.5e-10 68.6 191 29.3
FAN11G3928 Fragaria x ananassa HOM05D002065 ORTHO05D002050 7.5e-10 68.6 191 29.3
BcaB06g26126 Brassica carinata HOM05D002065 ORTHO05D002050 9.7e-10 68.2 212 28.8
Sed0007986 Sechium edule HOM05D002065 ORTHO05D002050 9.7e-10 68.2 145 35.2
A05p28250 Brassica napus HOM05D001038 ORTHO05D019929 1.3e-09 67.8 206 29.1
Atru.chr2.3214 Acer truncatum HOM05D002065 ORTHO05D002050 1.7e-09 67.4 206 29.1
BraA05t21707Z Brassica rapa HOM05D002065 ORTHO05D002050 1.7e-09 67.4 212 28.3
CiPaw.11G184100 Carya illinoinensis HOM05D002065 ORTHO05D002050 1.7e-09 67.4 198 31.3
Sabra16G0283800 Salix brachista HOM05D002065 ORTHO05D002050 1.7e-09 67.4 175 31.4
TPR.G36815 Trifolium pratense HOM05D002065 ORTHO05D002050 1.7e-09 67.4 169 29.6
Psat7g161480 Pisum sativum HOM05D002065 ORTHO05D002050 2.2e-09 67.0 167 32.3
CsaV3_3G023120 Cucumis sativus L. HOM05D002065 ORTHO05D002050 2.8e-09 66.6 143 35.7
PSO675G5185 Papaver somniferum HOM05D002065 ORTHO05D002050 2.8e-09 66.6 119 38.7
Manes.03G123200 Manihot esculenta HOM05D002065 ORTHO05D002050 3.7e-09 66.2 176 29.5
DCAR_008385 Daucus carota HOM05D059228 ORTHO05D002050 4.8e-09 65.9 155 31.6
Migut.M00291 Erythranthe guttata HOM05D002065 ORTHO05D002050 4.8e-09 65.9 186 31.2
PSO500G0109 Papaver somniferum HOM05D002065 ORTHO05D002050 4.8e-09 65.9 136 35.3
PSO732G0449 Papaver somniferum HOM05D002065 ORTHO05D002050 4.8e-09 65.9 147 35.4
TWI39G0180 Tripterygium wilfordii HOM05D002065 ORTHO05D002050 4.8e-09 65.9 163 31.9
AT3G20610 Arabidopsis thaliana HOM05D002065 ORTHO05D002050 6.3e-09 65.5 182 30.8
MD03G1211100 Malus domestica HOM05D002065 ORTHO05D002050 6.3e-09 65.5 189 30.2
Sed0026241 Sechium edule HOM05D002065 ORTHO05D002050 6.3e-09 65.5 144 34.0
Aa31LG8G7400 Aethionema arabicum HOM05D002065 ORTHO05D002050 8.2e-09 65.1 201 29.4
Ciclev10009510m.g Citrus clementina HOM05D002065 ORTHO05D002050 8.2e-09 65.1 172 32.0
PSO170G3882 Papaver somniferum HOM05D002065 ORTHO05D002050 8.2e-09 65.1 201 28.9
PSO541G2674 Papaver somniferum HOM05D002065 ORTHO05D002050 1.1e-08 64.7 152 31.6
BcaB04g20643 Brassica carinata HOM05D002065 ORTHO05D002050 1.4e-08 64.3 166 31.9
TWI38G0302 Tripterygium wilfordii HOM05D002065 ORTHO05D002050 1.4e-08 64.3 163 32.5
EL10Ac4g07957 Beta vulgaris HOM05D002065 ORTHO05D002050 1.8e-08 63.9 142 28.9
BcaC09g49003 Brassica carinata HOM05D002065 ORTHO05D002050 1.8e-08 63.9 166 31.3
A01p34210 Brassica napus HOM05D002065 ORTHO05D002050 1.8e-08 63.9 166 30.7
BolC1t04321H Brassica oleracea HOM05D002065 ORTHO05D002050 1.8e-08 63.9 166 31.3
BraA01t03521Z Brassica rapa HOM05D002065 ORTHO05D002050 1.8e-08 63.9 166 30.7
CARHR096380 Cardamine hirsuta HOM05D002065 ORTHO05D002050 1.8e-08 63.9 169 30.8
COL.COLO4_31720 Corchorus olitorius HOM05D004864 ORTHO05D005393 1.8e-08 63.9 150 31.3
VMungo1080G1659 Vigna mungo HOM05D002065 ORTHO05D002050 1.8e-08 63.9 180 27.2
BcaC01g03546 Brassica carinata HOM05D002065 ORTHO05D002050 2.4e-08 63.5 166 30.1
C03p51220 Brassica napus HOM05D002065 ORTHO05D002050 2.4e-08 63.5 166 30.1
BolC3t17412H Brassica oleracea HOM05D002065 ORTHO05D002050 2.4e-08 63.5 166 30.1
Carub.0003s2057 Capsella rubella HOM05D002065 ORTHO05D002050 2.4e-08 63.5 194 29.9
Prupe.4G204400 Prunus persica HOM05D002065 ORTHO05D002050 2.4e-08 63.5 203 29.1
AL3G34460 Arabidopsis lyrata HOM05D002065 ORTHO05D002050 3.1e-08 63.2 164 28.0
Lalb_Chr14g0366161 Lupinus albus HOM05D002065 ORTHO05D002050 3.1e-08 63.2 173 29.5
MD03G1211000 Malus domestica HOM05D002065 ORTHO05D002050 3.1e-08 63.2 198 31.3
PGR083G2635 Punica granatum HOM05D002065 ORTHO05D002050 3.1e-08 63.2 166 30.7
BraA03t13337Z Brassica rapa HOM05D002065 ORTHO05D002050 4.1e-08 62.8 166 30.1
Medtr2g082990 Medicago truncatula HOM05D002065 ORTHO05D002050 4.1e-08 62.8 181 27.1
Nn1g07007 Nelumbo nucifera HOM05D002065 ORTHO05D002050 4.1e-08 62.8 171 29.2
BcaB04g19117 Brassica carinata HOM05D002065 ORTHO05D002050 5.3e-08 62.4 166 30.1
AUR62020550 Chenopodium quinoa HOM05D002065 ORTHO05D002050 5.3e-08 62.4 138 33.3
Manes.15G076400 Manihot esculenta HOM05D002065 ORTHO05D002050 5.3e-08 62.4 198 28.3
TPR.G25922 Trifolium pratense HOM05D002065 ORTHO05D002050 5.3e-08 62.4 166 27.7
AT3G20600 Arabidopsis thaliana HOM05D002065 ORTHO05D002050 7.0e-08 62.0 194 27.8
A03p41840 Brassica napus HOM05D002065 ORTHO05D002050 7.0e-08 62.0 190 30.0
Potri.011G133900 Populus trichocarpa HOM05D002065 ORTHO05D002050 9.1e-08 61.6 202 31.2
THA.LOC104817885 Tarenaya hassleriana HOM05D002065 ORTHO05D002050 9.1e-08 61.6 198 26.3
Solyc01g006320.4 Solanum lycopersicum HOM05D002065 ORTHO05D002050 1.2e-07 61.2 212 28.3
Sopen01g002320 Solanum pennellii HOM05D002065 ORTHO05D002050 1.2e-07 61.2 141 32.6
PSO675G1570 Papaver somniferum HOM05D002065 ORTHO05D002050 1.6e-07 60.8 143 29.4
PGSC0003DMG400032231 Solanum tuberosum HOM05D002065 ORTHO05D002050 1.6e-07 60.8 150 30.7
AL3G34450 Arabidopsis lyrata HOM05D002065 ORTHO05D002050 2.0e-07 60.5 153 32.0
Migut.M00290 Erythranthe guttata HOM05D002065 ORTHO05D002050 2.0e-07 60.5 200 30.0
Migut.M00312 Erythranthe guttata HOM05D002065 ORTHO05D002050 2.0e-07 60.5 177 33.3
PSO675G9369 Papaver somniferum HOM05D002065 ORTHO05D002050 2.0e-07 60.5 122 33.6
EL10Ac4g07955 Beta vulgaris HOM05D002065 ORTHO05D002050 3.5e-07 59.7 167 31.7
CARHR096390 Cardamine hirsuta HOM05D002065 ORTHO05D002050 3.5e-07 59.7 165 30.9
ECA246G0552 Erigeron canadensis HOM05D059448 ORTHO05D035029 3.5e-07 59.7 133 35.3
AUR62015650 Chenopodium quinoa HOM05D002065 ORTHO05D002050 4.5e-07 59.3 115 33.9
Lsat_1_v5_gn_9_1400 Lactuca sativa HOM05D042186 ORTHO05D036432 4.5e-07 59.3 171 29.8
Potri.001G418000 Populus trichocarpa HOM05D002065 ORTHO05D002050 5.9e-07 58.9 177 30.5
Aa31LG8G7410 Aethionema arabicum HOM05D002065 ORTHO05D002050 1.0e-06 58.2 180 27.8
Sp3g18630 Schrenkiella parvula HOM05D002065 ORTHO05D002050 1.0e-06 58.2 124 33.9
AUR62015649 Chenopodium quinoa HOM05D002065 ORTHO05D002050 1.3e-06 57.8 144 32.6
AUR62015652 Chenopodium quinoa HOM05D002065 ORTHO05D002050 1.7e-06 57.4 173 30.1
Ca_01751_v3 Cicer arietinum L. HOM05D002065 ORTHO05D002050 1.7e-06 57.4 212 27.4
PSO017G7112 Papaver somniferum HOM05D002065 ORTHO05D002050 1.7e-06 57.4 151 33.1
AUR62020551 Chenopodium quinoa HOM05D002065 ORTHO05D002050 2.2e-06 57.0 134 35.8
Glyma.13G287500 Glycine max HOM05D002065 ORTHO05D002050 2.2e-06 57.0 181 28.2
ATR0794G057 Amborella trichopoda HOM05D002065 ORTHO05D002050 2.9e-06 56.6 178 24.7
Lsat_1_v5_gn_3_2000 Lactuca sativa HOM05D042186 ORTHO05D036432 2.9e-06 56.6 147 29.3
EL10Ac4g07956 Beta vulgaris HOM05D002065 ORTHO05D002050 3.8e-06 56.2 170 31.2
MBI02_g10994_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 3.8e-06 56.2 148 29.7
Migut.M00324 Erythranthe guttata HOM05D002065 ORTHO05D002050 5.0e-06 55.8 225 29.8
PSO675G3505 Papaver somniferum HOM05D002065 ORTHO05D002050 5.0e-06 55.8 195 28.2
TAR629G2849 Trochodendron aralioides HOM05D002065 ORTHO05D002050 6.5e-06 55.5 185 27.0
Thhalv10022399m.g Eutrema salsugineum HOM05D002065 ORTHO05D002050 8.5e-06 55.1 112 32.1
HanXRQChr17g0550381 Helianthus annuus HOM05D012725 ORTHO05D013597 8.5e-06 55.1 169 27.8


User provided reference genes

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