Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008383 Daucus carota HOM05D002065 ORTHO05D002050 3.8e-114 414.8 206 100.0
DCAR_008386 Daucus carota HOM05D002065 ORTHO05D002050 8.8e-63 244.2 202 61.4
DCAR_008380 Daucus carota HOM05D002065 ORTHO05D002050 1.1e-62 243.8 199 59.8
DCAR_008384 Daucus carota HOM05D002065 ORTHO05D002050 7.7e-59 231.1 199 57.8
DCAR_008381 Daucus carota HOM05D002065 ORTHO05D002050 1.4e-57 226.9 199 58.8
DCAR_020516 Daucus carota HOM05D002065 ORTHO05D002050 8.5e-50 201.1 200 51.5
DCAR_019578 Daucus carota HOM05D002065 ORTHO05D035029 5.4e-36 155.2 202 43.6
DCAR_019582 Daucus carota HOM05D002065 ORTHO05D002050 5.2e-31 138.7 168 42.9
DCAR_008382 Daucus carota HOM05D002065 ORTHO05D175199 6.8e-31 138.3 116 62.9
DCAR_019579 Daucus carota HOM05D002065 ORTHO05D002050 2.7e-27 126.3 194 39.7
MSTRG.14416 Avicennia marina HOM05D002065 ORTHO05D002050 3.5e-19 99.4 178 38.8
Lj8P166T75 Lonicera japonica HOM05D002065 ORTHO05D002050 2.1e-16 90.1 158 37.3
Hma1.2p1_1564F.1_g290830 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 2.8e-16 89.7 192 32.8
TAR626G1743 Trochodendron aralioides HOM05D002065 ORTHO05D002050 8.0e-16 88.2 184 35.9
DCAR_020515 Daucus carota HOM05D002065 ORTHO05D002050 1.1e-15 87.8 182 36.8
Dinv40711 Davidia involucrata HOM05D002065 ORTHO05D001766 1.8e-15 87.0 158 37.3
Hma1.2p1_1869F.1_g306050 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 1.8e-15 87.0 159 37.7
Lj8C77T4 Lonicera japonica HOM05D002065 ORTHO05D002050 1.8e-15 87.0 159 36.5
Hma1.2p1_1869F.1_g306060 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 4.0e-15 85.9 192 31.2
Lsat_1_v5_gn_3_120800 Lactuca sativa HOM05D002065 ORTHO05D002050 4.0e-15 85.9 135 39.3
RhsimUnG0253100 Rhododendron simsii HOM05D002065 ORTHO05D002050 4.0e-15 85.9 181 34.8
TAR629G2752 Trochodendron aralioides HOM05D002065 ORTHO05D002050 4.0e-15 85.9 165 34.5
Lsat_1_v5_gn_5_5781 Lactuca sativa HOM05D002065 ORTHO05D002050 6.8e-15 85.1 137 40.9
Migut.M01810 Erythranthe guttata HOM05D002065 ORTHO05D002050 2.0e-14 83.6 179 36.3
Cc05_g13270 Coffea canephora HOM05D002065 ORTHO05D002050 2.6e-14 83.2 160 36.9
MD11G1225800 Malus domestica HOM05D002065 ORTHO05D002050 3.4e-14 82.8 189 34.9
Cfa020411 Carpinus fangiana HOM05D002065 ORTHO05D002050 4.4e-14 82.4 186 31.7
ClCG05G014750 Citrullus lanatus HOM05D002065 ORTHO05D002050 7.5e-14 81.6 160 36.2
DCAR_022527 Daucus carota HOM05D002065 ORTHO05D002050 1.7e-13 80.5 158 39.2
Dinv22303 Davidia involucrata HOM05D002065 ORTHO05D002050 2.2e-13 80.1 148 36.5
MD03G1210900 Malus domestica HOM05D002065 ORTHO05D002050 2.2e-13 80.1 189 33.3
Nn1g03652 Nelumbo nucifera HOM05D002065 ORTHO05D002050 2.2e-13 80.1 159 34.6
Actinidia35318 Actinidia chinensis HOM05D000018 ORTHO05D001766 2.9e-13 79.7 189 35.4
Haze_09617 Corylus avellana HOM05D002065 ORTHO05D002050 2.9e-13 79.7 186 31.7
Lj8C77T5 Lonicera japonica HOM05D002065 ORTHO05D002050 2.9e-13 79.7 157 34.4
DCAR_022525 Daucus carota HOM05D002065 ORTHO05D002050 4.9e-13 79.0 186 30.6
SGA_v2.0_scaffold27G11640 Striga asiatica HOM05D002065 ORTHO05D002050 8.3e-13 78.2 185 33.5
Nitab4.5_0000092g0090 Nicotiana tabacum HOM05D002065 ORTHO05D002050 1.1e-12 77.8 186 34.4
Actinidia09932 Actinidia chinensis HOM05D002065 ORTHO05D002050 1.4e-12 77.4 158 36.1
Cpa.g.c26548.3 Carica papaya HOM05D002065 ORTHO05D002050 1.4e-12 77.4 158 34.8
Oeu062613.1 Olea europaea HOM05D002065 ORTHO05D002050 1.4e-12 77.4 159 37.7
Oeu042915.1 Olea europaea HOM05D002065 ORTHO05D002050 1.9e-12 77.0 144 39.6
SalBow8G3023 Salvia bowleyana HOM05D002065 ORTHO05D002050 3.2e-12 76.3 184 35.9
Sopen12g001210 Solanum pennellii HOM05D002065 ORTHO05D002050 3.2e-12 76.3 180 34.4
AT3G20590 Arabidopsis thaliana HOM05D002065 ORTHO05D002050 4.1e-12 75.9 180 35.6
Solyc12g005230.3 Solanum lycopersicum HOM05D001540 ORTHO05D001520 5.4e-12 75.5 158 34.8
Cfa020412 Carpinus fangiana HOM05D002065 ORTHO05D002050 7.0e-12 75.1 158 37.3
QL08p013247 Quercus lobata HOM05D002065 ORTHO05D002050 9.2e-12 74.7 183 32.8
TAR626G0982 Trochodendron aralioides HOM05D002065 ORTHO05D002050 9.2e-12 74.7 194 35.1
Haze_09616 Corylus avellana HOM05D002065 ORTHO05D002050 2.0e-11 73.6 187 33.7
DCAR_022526 Daucus carota HOM05D002065 ORTHO05D002050 2.0e-11 73.6 186 30.1
PSO017G0621 Papaver somniferum HOM05D002065 ORTHO05D002050 2.7e-11 73.2 169 29.6
Aqoxy4G02007 Aquilegia oxysepala HOM05D002065 ORTHO05D002050 4.6e-11 72.4 187 33.7
AL3G34460 Arabidopsis lyrata HOM05D002065 ORTHO05D002050 7.8e-11 71.6 162 34.6
CsaV3_3G023120 Cucumis sativus L. HOM05D002065 ORTHO05D002050 1.0e-10 71.2 159 35.2
TWI38G0302 Tripterygium wilfordii HOM05D002065 ORTHO05D002050 1.0e-10 71.2 163 33.1
DCAR_008387 Daucus carota HOM05D059228 ORTHO05D002050 1.3e-10 70.9 193 29.5
MD03G1211000 Malus domestica HOM05D002065 ORTHO05D002050 1.7e-10 70.5 190 33.2
MD03G1211100 Malus domestica HOM05D002065 ORTHO05D002050 1.7e-10 70.5 189 30.7
FAN16G0462 Fragaria x ananassa HOM05D002065 ORTHO05D002050 2.3e-10 70.1 184 31.5
FAN21G3193 Fragaria x ananassa HOM05D002065 ORTHO05D002050 3.0e-10 69.7 184 32.6
EL10Ac4g07955 Beta vulgaris HOM05D002065 ORTHO05D002050 3.9e-10 69.3 169 32.0
CARHR096380 Cardamine hirsuta HOM05D002065 ORTHO05D002050 3.9e-10 69.3 170 31.8
FvH4_3g21890 Fragaria vesca HOM05D002065 ORTHO05D002050 3.9e-10 69.3 184 31.5
FAN11G3928 Fragaria x ananassa HOM05D002065 ORTHO05D002050 3.9e-10 69.3 184 31.5
Psat7g161480 Pisum sativum HOM05D002065 ORTHO05D002050 3.9e-10 69.3 163 31.3
RcHm_v2.0_Chr5g0037701 Rosa chinensis HOM05D002065 ORTHO05D002050 5.0e-10 68.9 184 32.6
TAR626G1859 Trochodendron aralioides HOM05D002065 ORTHO05D002050 5.0e-10 68.9 170 33.5
PSO675G5185 Papaver somniferum HOM05D002065 ORTHO05D002050 8.6e-10 68.2 161 32.9
Oeu025507.1 Olea europaea HOM05D002065 ORTHO05D002050 1.1e-09 67.8 159 33.3
Aa31LG8G7400 Aethionema arabicum HOM05D002065 ORTHO05D002050 1.5e-09 67.4 158 33.5
AT3G20600 Arabidopsis thaliana HOM05D002065 ORTHO05D002050 1.5e-09 67.4 162 33.3
Oeu025506.1 Olea europaea HOM05D002065 ORTHO05D002050 1.5e-09 67.4 159 33.3
PSO732G0449 Papaver somniferum HOM05D002065 ORTHO05D002050 1.5e-09 67.4 161 32.3
Sp3g18640 Schrenkiella parvula HOM05D002065 ORTHO05D002050 1.5e-09 67.4 159 32.1
Manes.03G123200 Manihot esculenta HOM05D002065 ORTHO05D002050 1.9e-09 67.0 177 30.5
Oeu025495.1 Olea europaea HOM05D002065 ORTHO05D002050 1.9e-09 67.0 159 33.3
Sp3g18650 Schrenkiella parvula HOM05D002065 ORTHO05D002050 1.9e-09 67.0 161 32.9
TWI39G0180 Tripterygium wilfordii HOM05D002065 ORTHO05D002050 1.9e-09 67.0 161 33.5
Atru.chr2.3214 Acer truncatum HOM05D002065 ORTHO05D002050 4.3e-09 65.9 171 33.9
Lsat_1_v5_gn_3_2000 Lactuca sativa HOM05D042186 ORTHO05D036432 4.3e-09 65.9 149 34.2
Nn1g07007 Nelumbo nucifera HOM05D002065 ORTHO05D002050 4.3e-09 65.9 151 33.1
TPR.G36815 Trifolium pratense HOM05D002065 ORTHO05D002050 4.3e-09 65.9 194 30.9
Oeu025490.1 Olea europaea HOM05D002065 ORTHO05D002050 5.6e-09 65.5 159 33.3
CANSAT64G1415 Cannabis sativa HOM05D002065 ORTHO05D002050 7.3e-09 65.1 191 32.5
CAN.G140.7 Capsicum annuum HOM05D002065 ORTHO05D002050 7.3e-09 65.1 158 30.4
Sed0007986 Sechium edule HOM05D002065 ORTHO05D002050 7.3e-09 65.1 146 34.9
PGSC0003DMG400032231 Solanum tuberosum HOM05D002065 ORTHO05D002050 7.3e-09 65.1 187 29.9
ATR0794G057 Amborella trichopoda HOM05D002065 ORTHO05D002050 9.5e-09 64.7 163 31.9
BcaB04g19117 Brassica carinata HOM05D002065 ORTHO05D002050 9.5e-09 64.7 162 31.5
Carub.0003s2057 Capsella rubella HOM05D002065 ORTHO05D002050 9.5e-09 64.7 166 34.3
Ciclev10009510m.g Citrus clementina HOM05D002065 ORTHO05D002050 9.5e-09 64.7 167 31.1
Medtr2g082990 Medicago truncatula HOM05D002065 ORTHO05D002050 9.5e-09 64.7 167 31.1
Peaxi162Scf00192g00005 Petunia axillaris HOM05D002065 ORTHO05D002050 9.5e-09 64.7 125 33.6
THA.LOC104817885 Tarenaya hassleriana HOM05D002065 ORTHO05D002050 9.5e-09 64.7 183 30.1
Eucgr.F00981 Eucalyptus grandis HOM05D002065 ORTHO05D002050 1.2e-08 64.3 189 33.3
TPR.G25922 Trifolium pratense HOM05D002065 ORTHO05D002050 1.6e-08 63.9 160 28.8
PGR083G2635 Punica granatum HOM05D002065 ORTHO05D002050 2.1e-08 63.5 193 33.2
SalBow7G3313 Salvia bowleyana HOM05D002065 ORTHO05D002050 2.8e-08 63.2 162 31.5
Sabra16G0283800 Salix brachista HOM05D002065 ORTHO05D002050 3.6e-08 62.8 140 33.6
Sp3g18630 Schrenkiella parvula HOM05D002065 ORTHO05D002050 3.6e-08 62.8 133 34.6
Solyc01g006320.4 Solanum lycopersicum HOM05D002065 ORTHO05D002050 3.6e-08 62.8 158 31.6
Migut.M00291 Erythranthe guttata HOM05D002065 ORTHO05D002050 4.7e-08 62.4 161 32.3
Migut.M00312 Erythranthe guttata HOM05D002065 ORTHO05D002050 4.7e-08 62.4 187 31.6
Migut.M00324 Erythranthe guttata HOM05D002065 ORTHO05D002050 4.7e-08 62.4 192 31.8
Aa31LG8G7410 Aethionema arabicum HOM05D002065 ORTHO05D002050 6.2e-08 62.0 158 32.3
ATR0794G125 Amborella trichopoda HOM05D002065 ORTHO05D002050 6.2e-08 62.0 163 30.1
A03p41840 Brassica napus HOM05D002065 ORTHO05D002050 6.2e-08 62.0 162 30.2
BraA03t13337Z Brassica rapa HOM05D002065 ORTHO05D002050 6.2e-08 62.0 162 30.2
Lalb_Chr14g0366161 Lupinus albus HOM05D002065 ORTHO05D002050 6.2e-08 62.0 167 26.3
MBI02_g10994_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 6.2e-08 62.0 173 32.4
BcaC01g03546 Brassica carinata HOM05D002065 ORTHO05D002050 8.1e-08 61.6 162 30.2
C03p51220 Brassica napus HOM05D002065 ORTHO05D002050 8.1e-08 61.6 162 30.2
BolC3t17412H Brassica oleracea HOM05D002065 ORTHO05D002050 8.1e-08 61.6 162 30.2
Nn1g03650 Nelumbo nucifera HOM05D002065 ORTHO05D002050 1.1e-07 61.2 151 31.1
A01p34210 Brassica napus HOM05D002065 ORTHO05D002050 1.4e-07 60.8 160 29.4
BraA01t03521Z Brassica rapa HOM05D002065 ORTHO05D002050 1.4e-07 60.8 160 29.4
CiPaw.11G184100 Carya illinoinensis HOM05D002065 ORTHO05D002050 1.4e-07 60.8 179 30.2
BcaC05g28309 Brassica carinata HOM05D002065 ORTHO05D002050 1.8e-07 60.5 158 29.7
C05p43700 Brassica napus HOM05D002065 ORTHO05D002050 1.8e-07 60.5 158 29.7
Ca_01751_v3 Cicer arietinum L. HOM05D002065 ORTHO05D002050 1.8e-07 60.5 187 29.9
Thhalv10021500m.g Eutrema salsugineum HOM05D002065 ORTHO05D002050 1.8e-07 60.5 162 30.2
Phvul.005G091900 Phaseolus vulgaris HOM05D002065 ORTHO05D002050 1.8e-07 60.5 132 31.1
PGSC0003DMG400002090 Solanum tuberosum HOM05D002065 ORTHO05D002050 3.1e-07 59.7 168 26.2
Migut.M00290 Erythranthe guttata HOM05D002065 ORTHO05D002050 4.0e-07 59.3 142 33.8
PSO675G1570 Papaver somniferum HOM05D002065 ORTHO05D002050 4.0e-07 59.3 194 28.9
Prupe.4G204400 Prunus persica HOM05D002065 ORTHO05D002050 4.0e-07 59.3 185 30.8
Sopen01g002320 Solanum pennellii HOM05D002065 ORTHO05D002050 4.0e-07 59.3 124 34.7
BcaB04g20643 Brassica carinata HOM05D002065 ORTHO05D002050 5.2e-07 58.9 163 30.7
BolC1t04321H Brassica oleracea HOM05D002065 ORTHO05D002050 5.2e-07 58.9 160 28.8
AUR62015650 Chenopodium quinoa HOM05D002065 ORTHO05D002050 5.2e-07 58.9 126 35.7
AUR62020550 Chenopodium quinoa HOM05D002065 ORTHO05D002050 5.2e-07 58.9 181 30.4
Glyma.13G287500 Glycine max HOM05D002065 ORTHO05D002050 5.2e-07 58.9 148 31.1
VMungo1080G1659 Vigna mungo HOM05D002065 ORTHO05D002050 5.2e-07 58.9 158 27.2
A05p28250 Brassica napus HOM05D001038 ORTHO05D019929 6.8e-07 58.5 158 29.1
BraA05t21707Z Brassica rapa HOM05D002065 ORTHO05D002050 6.8e-07 58.5 158 29.1
Sopen02g024810 Solanum pennellii HOM05D002065 ORTHO05D002050 6.8e-07 58.5 168 26.2
Aqoxy4G00180 Aquilegia oxysepala HOM05D002065 ORTHO05D002050 8.9e-07 58.2 192 26.0
AT3G20610 Arabidopsis thaliana HOM05D002065 ORTHO05D002050 8.9e-07 58.2 161 28.0
Gorai.002G082700 Gossypium raimondii HOM05D002065 ORTHO05D002050 8.9e-07 58.2 179 29.1
BcaC09g49003 Brassica carinata HOM05D002065 ORTHO05D002050 2.0e-06 57.0 185 27.0
Potri.011G133900 Populus trichocarpa HOM05D002065 ORTHO05D002050 2.0e-06 57.0 182 29.7
Gohir.D01G061300 Gossypium hirsutum HOM05D002065 ORTHO05D002050 3.4e-06 56.2 179 29.1
Lsat_1_v5_gn_9_1400 Lactuca sativa HOM05D042186 ORTHO05D036432 3.4e-06 56.2 129 33.3
MBI18_g06812_MAGBIO Magnolia biondii HOM05D004864 ORTHO05D002050 3.4e-06 56.2 142 30.3
PGSC0003DMG400025621 Solanum tuberosum HOM05D002065 ORTHO05D002050 3.4e-06 56.2 89 42.7
Gohir.A01G074800 Gossypium hirsutum HOM05D002065 ORTHO05D002050 4.4e-06 55.8 179 29.1
Manes.15G076400 Manihot esculenta HOM05D002065 ORTHO05D002050 4.4e-06 55.8 187 27.8
C01p43600 Brassica napus HOM05D002065 ORTHO05D002050 5.8e-06 55.5 131 31.3
CAN.G140.6 Capsicum annuum HOM05D002065 ORTHO05D002050 7.5e-06 55.1 117 34.2
AUR62020551 Chenopodium quinoa HOM05D002065 ORTHO05D002050 7.5e-06 55.1 141 32.6
AUR62020549 Chenopodium quinoa HOM05D002065 ORTHO05D002050 9.9e-06 54.7 199 30.2


User provided reference genes

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