Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008345 Daucus carota HOM05D003414 ORTHO05D003913 4.2e-74 281.2 134 100.0
DCAR_010112 Daucus carota HOM05D003414 ORTHO05D003913 7.6e-15 84.3 50 80.0
Oeu059926.1 Olea europaea HOM05D003414 ORTHO05D003913 1.0e-11 73.9 50 64.0
Oeu056411.1 Olea europaea HOM05D003414 ORTHO05D003913 1.7e-11 73.2 50 68.0
Manes.13G027800 Manihot esculenta HOM05D003414 ORTHO05D003913 3.0e-11 72.4 50 68.0
COL.COLO4_16919 Corchorus olitorius HOM05D003414 ORTHO05D003913 3.9e-11 72.0 50 64.0
TWI18G0866 Tripterygium wilfordii HOM05D003414 ORTHO05D003913 3.9e-11 72.0 50 64.0
Migut.L01464 Erythranthe guttata HOM05D003414 ORTHO05D003913 6.6e-11 71.2 79 43.0
Lalb_Chr16g0382141 Lupinus albus HOM05D003414 ORTHO05D003913 6.6e-11 71.2 50 66.0
Manes.12G026100 Manihot esculenta HOM05D003414 ORTHO05D003913 6.6e-11 71.2 50 68.0
MD15G1134100 Malus domestica HOM05D003414 ORTHO05D003913 8.6e-11 70.9 47 61.7
PGR119G0039 Punica granatum HOM05D003414 ORTHO05D003913 1.1e-10 70.5 83 39.8
Solyc03g112450.4 Solanum lycopersicum HOM05D003414 ORTHO05D003913 1.1e-10 70.5 114 41.2
CANSAT01G0332 Cannabis sativa HOM05D003414 ORTHO05D003913 1.5e-10 70.1 50 62.0
Duzib084G0257 Durio zibethinus HOM05D003414 ORTHO05D003913 1.5e-10 70.1 50 64.0
TAR371G0246 Trochodendron aralioides HOM05D003414 ORTHO05D003913 1.5e-10 70.1 50 64.0
TAR629G3074 Trochodendron aralioides HOM05D003414 ORTHO05D003913 1.5e-10 70.1 50 62.0
vmacro01152 Vaccinium macrocarpon HOM05D003414 ORTHO05D003913 1.5e-10 70.1 47 66.0
Atru.chr11.2070 Acer truncatum HOM05D003414 ORTHO05D003913 2.5e-10 69.3 50 64.0
Peaxi162Scf00086g00329 Petunia axillaris HOM05D003414 ORTHO05D003913 2.5e-10 69.3 50 66.0
Sc12g0005240 Simmondsia chinensis HOM05D003414 ORTHO05D003913 2.5e-10 69.3 89 41.6
Thecc.03G311500 Theobroma cacao HOM05D003414 ORTHO05D003913 2.5e-10 69.3 50 62.0
ATR0763G280 Amborella trichopoda HOM05D003414 ORTHO05D003913 3.3e-10 68.9 80 41.2
MD10G1002700 Malus domestica HOM05D003414 ORTHO05D003913 3.3e-10 68.9 47 59.6
Nitab4.5_0000570g0070 Nicotiana tabacum HOM05D003414 ORTHO05D003913 3.3e-10 68.9 50 64.0
VMungo1215G2070 Vigna mungo HOM05D003414 ORTHO05D003913 3.3e-10 68.9 80 41.2
GSVIVG01013784001 Vitis vinifera HOM05D003414 ORTHO05D003913 3.3e-10 68.9 83 41.0
Lsat_1_v5_gn_1_119941 Lactuca sativa HOM05D003414 ORTHO05D003913 4.3e-10 68.6 50 66.0
Lsat_1_v5_gn_5_70981 Lactuca sativa HOM05D003414 ORTHO05D003913 4.3e-10 68.6 50 66.0
Lsat_1_v5_gn_6_83720 Lactuca sativa HOM05D003414 ORTHO05D003913 4.3e-10 68.6 50 66.0
AUR62027450 Chenopodium quinoa HOM05D003414 ORTHO05D003913 5.6e-10 68.2 89 43.8
Nitab4.5_0000329g0140 Nicotiana tabacum HOM05D003414 ORTHO05D003913 5.6e-10 68.2 50 62.0
Carub.0003s3304 Capsella rubella HOM05D003414 ORTHO05D003913 7.3e-10 67.8 50 62.0
Ciclev10032463m.g Citrus clementina HOM05D003414 ORTHO05D003913 7.3e-10 67.8 50 62.0
Rhsim12G0043300 Rhododendron simsii HOM05D003414 ORTHO05D003913 7.3e-10 67.8 47 61.7
Sopen03g031530 Solanum pennellii HOM05D003414 ORTHO05D003913 7.3e-10 67.8 114 40.4
AL6G15560 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 9.6e-10 67.4 83 38.6
CSS0045981 Camellia sinensis var. sinensis HOM05D003414 ORTHO05D003913 9.6e-10 67.4 47 61.7
Cfa009179 Carpinus fangiana HOM05D003414 ORTHO05D003913 9.6e-10 67.4 50 60.0
Dinv29446 Davidia involucrata HOM05D003414 ORTHO05D003913 9.6e-10 67.4 50 60.0
HanXRQChr13g0415431 Helianthus annuus HOM05D003414 ORTHO05D003913 9.6e-10 67.4 50 64.0
Actinidia13495 Actinidia chinensis HOM05D003414 ORTHO05D003913 1.2e-09 67.0 47 66.0
Nitab4.5_0001819g0040 Nicotiana tabacum HOM05D003414 ORTHO05D003913 1.2e-09 67.0 50 60.0
AT2G18770 Arabidopsis thaliana HOM05D003414 ORTHO05D003913 1.6e-09 66.6 50 58.0
CAN.G546.30 Capsicum annuum HOM05D003414 ORTHO05D003913 1.6e-09 66.6 50 60.0
Glyma.02G036200 Glycine max HOM05D003414 ORTHO05D003913 1.6e-09 66.6 47 61.7
Lj2g0023712 Lotus japonicus HOM05D003414 ORTHO05D003913 1.6e-09 66.6 50 60.0
Lalb_Chr09g0326281 Lupinus albus HOM05D003414 ORTHO05D003913 1.6e-09 66.6 83 41.0
QL03p059258 Quercus lobata HOM05D003414 ORTHO05D003913 1.6e-09 66.6 80 40.0
arahy.Tifrunner.gnm1.ann1.27SX2S Arachis hypogaea HOM05D003414 ORTHO05D003913 2.1e-09 66.2 50 60.0
arahy.Tifrunner.gnm1.ann1.566SHA Arachis hypogaea HOM05D003414 ORTHO05D003913 2.1e-09 66.2 50 60.0
Duzib205G0939 Durio zibethinus HOM05D003414 ORTHO05D003913 2.1e-09 66.2 82 42.7
SGA_v2.0_scaffold63G21706 Striga asiatica HOM05D003414 ORTHO05D003913 2.1e-09 66.2 47 61.7
THA.LOC104807784 Tarenaya hassleriana HOM05D003414 ORTHO05D003913 2.1e-09 66.2 83 39.8
AL3G53170 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 2.8e-09 65.9 50 58.0
AT5G05670 Arabidopsis thaliana HOM05D003414 ORTHO05D003913 2.8e-09 65.9 83 37.3
AUR62031250 Chenopodium quinoa HOM05D003414 ORTHO05D003913 2.8e-09 65.9 89 41.6
Ca_03139_v3 Cicer arietinum L. HOM05D003414 ORTHO05D003913 2.8e-09 65.9 50 62.0
Eucgr.H02550 Eucalyptus grandis HOM05D003414 ORTHO05D003913 2.8e-09 65.9 50 58.0
Medtr5g033930 Medicago truncatula HOM05D003414 ORTHO05D003913 2.8e-09 65.9 50 60.0
Psat2g102320 Pisum sativum HOM05D003414 ORTHO05D003913 2.8e-09 65.9 50 60.0
Solyc11g043150.2 Solanum lycopersicum HOM05D003414 ORTHO05D003913 2.8e-09 65.9 50 60.0
Sopen11g019580 Solanum pennellii HOM05D003414 ORTHO05D003913 2.8e-09 65.9 50 60.0
ATR0199G007 Amborella trichopoda HOM05D003414 ORTHO05D003913 3.6e-09 65.5 80 41.2
CDE07G0297 Ceratophyllum demersum HOM05D003414 ORTHO05D003913 3.6e-09 65.5 50 60.0
Glyma.01G029000 Glycine max HOM05D003414 ORTHO05D003913 3.6e-09 65.5 47 61.7
MBI10_g27995_MAGBIO Magnolia biondii HOM05D003414 ORTHO05D003913 3.6e-09 65.5 47 61.7
Peaxi162Scf00086g00133 Petunia axillaris HOM05D003414 ORTHO05D003913 3.6e-09 65.5 50 58.0
PGSC0003DMG400000451 Solanum tuberosum HOM05D003414 ORTHO05D003913 3.6e-09 65.5 50 58.0
DCAR_028868 Daucus carota HOM05D049008 ORTHO05D000041 4.7e-09 65.1 40 77.5
Lj2A165T38 Lonicera japonica HOM05D003414 ORTHO05D003913 4.7e-09 65.1 50 58.0
Nn3g18717 Nelumbo nucifera HOM05D003414 ORTHO05D003913 4.7e-09 65.1 50 58.0
Psat7g182200 Pisum sativum HOM05D003414 ORTHO05D003913 4.7e-09 65.1 50 58.0
Hund02753 Selenicereus undatus HOM05D003414 ORTHO05D003913 4.7e-09 65.1 89 40.4
CARHR109370 Cardamine hirsuta HOM05D003414 ORTHO05D003913 6.2e-09 64.7 50 56.0
ClCG05G025490 Citrullus lanatus HOM05D003414 ORTHO05D003913 6.2e-09 64.7 47 57.4
DCAR_026250 Daucus carota HOM05D049008 ORTHO05D000041 6.2e-09 64.7 44 70.5
Hma1.2p1_0160F.1_g071100 Hydrangea macrophylla HOM05D003414 ORTHO05D003913 6.2e-09 64.7 47 57.4
TPR.G21092 Trifolium pratense HOM05D003414 ORTHO05D003913 6.2e-09 64.7 50 58.0
HPP92_005090 Vanilla planifolia HOM05D003414 ORTHO05D003913 6.2e-09 64.7 50 58.0
Carub.0006s0456 Capsella rubella HOM05D003414 ORTHO05D003913 8.1e-09 64.3 83 36.1
PGSC0003DMG400020871 Solanum tuberosum HOM05D003414 ORTHO05D003913 8.1e-09 64.3 49 59.2
BcaB03g16667 Brassica carinata HOM05D003414 ORTHO05D003913 1.1e-08 63.9 50 56.0
Phvul.002G064800 Phaseolus vulgaris HOM05D003414 ORTHO05D003913 1.1e-08 63.9 47 59.6
BolC3t12827H Brassica oleracea HOM05D003414 ORTHO05D003913 1.4e-08 63.5 83 34.9
CARHR207610 Cardamine hirsuta HOM05D003414 ORTHO05D003913 1.4e-08 63.5 50 56.0
Medtr4g071550 Medicago truncatula HOM05D003414 ORTHO05D003913 1.4e-08 63.5 47 59.6
Sp3g32260 Schrenkiella parvula HOM05D003414 ORTHO05D003913 1.4e-08 63.5 50 54.0
THA.LOC104824779 Tarenaya hassleriana HOM05D003414 ORTHO05D003913 1.4e-08 63.5 50 56.0
TPR.G16233 Trifolium pratense HOM05D003414 ORTHO05D003913 1.4e-08 63.5 50 58.0
Glyma.08G284800 Glycine max HOM05D003414 ORTHO05D003913 1.8e-08 63.2 83 36.1
Prupe.5G031200 Prunus persica HOM05D003414 ORTHO05D003913 1.8e-08 63.2 47 53.2
BcaC06g36459 Brassica carinata HOM05D003414 ORTHO05D003913 2.4e-08 62.8 50 54.0
A07p01870 Brassica napus HOM05D001097 ORTHO05D001009 2.4e-08 62.8 50 54.0
C07p04000 Brassica napus HOM05D001097 ORTHO05D001009 2.4e-08 62.8 50 54.0
BolC7t40789H Brassica oleracea HOM05D003414 ORTHO05D003913 2.4e-08 62.8 50 54.0
BraA07t27987Z Brassica rapa HOM05D003414 ORTHO05D003913 2.4e-08 62.8 50 54.0
MELO3C011981.2 Cucumis melo HOM05D003414 ORTHO05D003913 2.4e-08 62.8 47 57.4
Thhalv10022817m.g Eutrema salsugineum HOM05D003414 ORTHO05D003913 2.4e-08 62.8 50 56.0
Haze_12213 Corylus avellana HOM05D003414 ORTHO05D003913 3.1e-08 62.4 46 58.7
Nitab4.5_0004438g0070 Nicotiana tabacum HOM05D003414 ORTHO05D003913 3.1e-08 62.4 47 61.7
PSO063G3439 Papaver somniferum HOM05D003414 ORTHO05D003913 3.1e-08 62.4 50 56.0
Prupe.4G272800 Prunus persica HOM05D003414 ORTHO05D003913 3.1e-08 62.4 47 55.3
Sp6g37220 Schrenkiella parvula HOM05D003414 ORTHO05D003913 3.1e-08 62.4 83 34.9
Sed0009810 Sechium edule HOM05D003414 ORTHO05D003913 3.1e-08 62.4 47 53.2
Aqoxy6G00029 Aquilegia oxysepala HOM05D003414 ORTHO05D003913 4.0e-08 62.0 50 58.0
AL3G22240 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 4.0e-08 62.0 82 34.1
AL6G39020 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 4.0e-08 62.0 82 34.1
BcaB01g05755 Brassica carinata HOM05D003414 ORTHO05D003913 4.0e-08 62.0 83 34.9
CsaV3_5G031410 Cucumis sativus L. HOM05D003414 ORTHO05D003913 4.0e-08 62.0 47 55.3
PSO832G1583 Papaver somniferum HOM05D003414 ORTHO05D003913 4.0e-08 62.0 50 56.0
Potri.002G020900 Populus trichocarpa HOM05D003414 ORTHO05D003913 4.0e-08 62.0 47 57.4
Sed0017421 Sechium edule HOM05D003414 ORTHO05D003913 4.0e-08 62.0 48 52.1
Gohir.D03G176800 Gossypium hirsutum HOM05D003414 ORTHO05D003913 5.2e-08 61.6 50 58.0
AL6G25810 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 6.8e-08 61.2 76 38.2
CiPaw.05G186600 Carya illinoinensis HOM05D003414 ORTHO05D003913 6.8e-08 61.2 46 54.3
Cc01_g10380 Coffea canephora HOM05D003414 ORTHO05D003913 6.8e-08 61.2 50 60.0
Gohir.D08G174000 Gossypium hirsutum HOM05D003414 ORTHO05D003913 6.8e-08 61.2 50 52.0
Zm00001eb042120 Zea mays HOM05D003414 ORTHO05D003913 6.8e-08 61.2 47 55.3
Zm00001eb178650 Zea mays HOM05D003414 ORTHO05D003913 6.8e-08 61.2 47 55.3
AL3G39940 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 8.9e-08 60.8 49 49.0
EL10Ac5g10731 Beta vulgaris HOM05D003414 ORTHO05D003913 8.9e-08 60.8 86 40.7
A03p02400 Brassica napus HOM05D000093 ORTHO05D003913 8.9e-08 60.8 83 33.7
BraA03t09601Z Brassica rapa HOM05D003414 ORTHO05D003913 8.9e-08 60.8 83 33.7
Gohir.A03G000026 Gossypium hirsutum HOM05D003414 ORTHO05D003913 8.9e-08 60.8 50 58.0
Gorai.003G186100 Gossypium raimondii HOM05D003414 ORTHO05D003913 8.9e-08 60.8 50 58.0
Gohir.A08G153100 Gossypium hirsutum HOM05D003414 ORTHO05D003913 1.2e-07 60.5 50 50.0
FAN22G0068 Fragaria x ananassa HOM05D003414 ORTHO05D003913 1.5e-07 60.1 86 36.0
unitig_22.g6429 Utricularia gibba HOM05D003414 ORTHO05D003913 1.5e-07 60.1 47 55.3
BolC9t59879H Brassica oleracea HOM05D003414 ORTHO05D003913 2.0e-07 59.7 83 32.5
C09p71170 Brassica napus HOM05D003414 ORTHO05D003913 2.6e-07 59.3 83 32.5
Thhalv10014432m.g Eutrema salsugineum HOM05D003414 ORTHO05D003913 2.6e-07 59.3 83 33.7
FAN07G0063 Fragaria x ananassa HOM05D003414 ORTHO05D003913 2.6e-07 59.3 86 36.0
SEGI_19255 Sequoiadendron giganteum HOM05D003414 ORTHO05D003913 2.6e-07 59.3 86 37.2
MSTRG.13359 Avicennia marina HOM05D003414 ORTHO05D003913 3.4e-07 58.9 47 55.3
BcaB01g05959 Brassica carinata HOM05D003414 ORTHO05D003913 3.4e-07 58.9 79 34.2
C03p02730 Brassica napus HOM05D003414 ORTHO05D003913 3.4e-07 58.9 79 34.2
Gorai.004G181700 Gossypium raimondii HOM05D003414 ORTHO05D003913 3.4e-07 58.9 50 50.0
SalBow8G5473 Salvia bowleyana HOM05D003414 ORTHO05D003913 3.4e-07 58.9 47 48.9
MD06G1037800 Malus domestica HOM05D003414 ORTHO05D003913 5.8e-07 58.2 47 55.3
Pp3c4_20930 Physcomitrium patens HOM05D003414 ORTHO05D003913 5.8e-07 58.2 85 41.2
GSVIVG01007725001 Vitis vinifera HOM05D003414 ORTHO05D003913 5.8e-07 58.2 50 50.0
Aqoxy3G02886 Aquilegia oxysepala HOM05D003414 ORTHO05D003913 7.6e-07 57.8 47 55.3
Hund09448 Selenicereus undatus HOM05D003414 ORTHO05D003913 9.9e-07 57.4 88 39.8
AL6G44250 Arabidopsis lyrata HOM05D003414 ORTHO05D008133 1.3e-06 57.0 46 50.0
FvH4_4g10641 Fragaria vesca HOM05D003414 ORTHO05D003913 1.3e-06 57.0 86 34.9
RcHm_v2.0_Chr4g0406261 Rosa chinensis HOM05D003414 ORTHO05D003913 1.3e-06 57.0 47 51.1
SEGI_26072 Sequoiadendron giganteum HOM05D003414 ORTHO05D003913 1.3e-06 57.0 86 36.0
Os06g0473100 Oryza sativa ssp. japonica HOM05D003414 ORTHO05D003913 2.2e-06 56.2 47 53.2
Aa31LG8G15890 Aethionema arabicum HOM05D003414 ORTHO05D003913 2.9e-06 55.8 47 55.3
A10p30690 Brassica napus HOM05D003414 ORTHO05D003913 2.9e-06 55.8 80 31.2
BraA10t45110Z Brassica rapa HOM05D003414 ORTHO05D003913 2.9e-06 55.8 80 31.2
RcHm_v2.0_Chr7g0219271 Rosa chinensis HOM05D003414 ORTHO05D003913 2.9e-06 55.8 47 46.8


User provided reference genes

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