Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008282 Daucus carota HOM05D000010 ORTHO05D000063 6.8e-116 420.6 204 100.0
DCAR_008284 Daucus carota HOM05D000010 ORTHO05D000063 1.6e-112 409.5 204 97.5
CSS0047135 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000063 8.4e-50 201.1 209 52.2
Hma1.2p1_2785F.1_g328430 Hydrangea macrophylla HOM05D000010 ORTHO05D000063 6.7e-47 191.4 199 51.8
Rhsim11G0012800 Rhododendron simsii HOM05D000010 ORTHO05D000063 4.3e-46 188.7 199 52.8
vmacro00343 Vaccinium macrocarpon HOM05D000010 ORTHO05D000063 1.3e-45 187.2 203 50.2
Haze_08265 Corylus avellana HOM05D000010 ORTHO05D000063 2.6e-43 179.5 210 46.7
Actinidia25951 Actinidia chinensis HOM05D000010 ORTHO05D000063 4.5e-43 178.7 204 51.5
GSVIVG01013182001 Vitis vinifera HOM05D000010 ORTHO05D000063 1.3e-42 177.2 203 46.3
CSS0042675 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000063 1.7e-42 176.8 210 46.7
CSS0047389 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000063 1.7e-42 176.8 210 46.7
Manes.15G169500 Manihot esculenta HOM05D000010 ORTHO05D000063 2.2e-42 176.4 202 48.5
Lj2C242T24 Lonicera japonica HOM05D000010 ORTHO05D000063 1.1e-41 174.1 203 47.8
Hma1.2p1_0585F.1_g183610 Hydrangea macrophylla HOM05D000010 ORTHO05D000063 1.4e-41 173.7 211 45.0
CiPaw.11G091300 Carya illinoinensis HOM05D000010 ORTHO05D000063 3.2e-41 172.6 193 46.1
Cc08_g02440 Coffea canephora HOM05D000010 ORTHO05D000063 1.2e-40 170.6 205 48.8
TAR636G1308 Trochodendron aralioides HOM05D000010 ORTHO05D000063 1.0e-39 167.5 199 45.7
FAN13G2796 Fragaria x ananassa HOM05D000010 ORTHO05D000063 3.9e-39 165.6 210 43.8
Ciclev10031966m.g Citrus clementina HOM05D000010 ORTHO05D000063 5.1e-39 165.2 214 44.4
Potri.003G089800 Populus trichocarpa HOM05D000010 ORTHO05D000063 5.1e-39 165.2 215 45.6
Atru.chr6.1753 Acer truncatum HOM05D000010 ORTHO05D000063 2.5e-38 162.9 201 45.8
MD06G1031700 Malus domestica HOM05D000010 ORTHO05D000063 2.5e-38 162.9 211 43.1
FAN18G2653 Fragaria x ananassa HOM05D000010 ORTHO05D000063 3.3e-38 162.5 210 42.9
FvH4_5g21670 Fragaria vesca HOM05D000010 ORTHO05D000063 5.7e-38 161.8 199 44.7
FAN08G0157 Fragaria x ananassa HOM05D000010 ORTHO05D000063 9.7e-38 161.0 210 43.3
Cfa012412 Carpinus fangiana HOM05D000010 ORTHO05D000063 2.2e-37 159.8 195 45.6
Potri.001G144400 Populus trichocarpa HOM05D000010 ORTHO05D000063 6.3e-37 158.3 204 45.1
TAR629G1580 Trochodendron aralioides HOM05D000010 ORTHO05D000063 8.2e-37 157.9 189 44.4
FAN04G0735 Fragaria x ananassa HOM05D000010 ORTHO05D000063 1.1e-36 157.5 210 42.4
CiPaw.12G061800 Carya illinoinensis HOM05D000010 ORTHO05D000063 1.4e-36 157.1 211 43.1
Actinidia14817 Actinidia chinensis HOM05D000010 ORTHO05D000063 1.8e-36 156.8 193 46.6
RcHm_v2.0_Chr7g0209171 Rosa chinensis HOM05D000010 ORTHO05D000063 5.3e-36 155.2 199 43.2
Peaxi162Scf00695g00512 Petunia axillaris HOM05D000010 ORTHO05D000063 1.2e-35 154.1 209 44.5
TWI81G0881 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 1.2e-35 154.1 189 45.0
Duzib205G1785 Durio zibethinus HOM05D000010 ORTHO05D000063 2.0e-35 153.3 209 43.1
Thecc.03G230900 Theobroma cacao HOM05D000010 ORTHO05D000063 2.0e-35 153.3 212 43.4
Glyma.05G113000 Glycine max HOM05D000010 ORTHO05D000063 5.9e-35 151.8 203 40.9
Lj8A291T56 Lonicera japonica HOM05D000010 ORTHO05D000063 7.7e-35 151.4 200 46.0
Sabra03G0059700 Salix brachista HOM05D000010 ORTHO05D000063 1.0e-34 151.0 195 44.6
Sabra01G0112800 Salix brachista HOM05D000010 ORTHO05D000063 1.3e-34 150.6 204 43.1
Sc01g0007580 Simmondsia chinensis HOM05D000010 ORTHO05D000063 2.2e-34 149.8 194 44.8
Eucgr.E00298 Eucalyptus grandis HOM05D000010 ORTHO05D000063 2.9e-34 149.4 208 42.8
CAN.G1659.1 Capsicum annuum HOM05D000010 ORTHO05D000063 1.2e-32 144.1 199 42.7
CsaV3_3G049360 Cucumis sativus L. HOM05D000010 ORTHO05D000063 1.6e-32 143.7 197 42.6
Nn1g00574 Nelumbo nucifera HOM05D000010 ORTHO05D000063 1.0e-31 141.0 202 40.6
Lsat_1_v5_gn_6_87981 Lactuca sativa HOM05D000010 ORTHO05D000063 1.8e-31 140.2 200 44.5
Solyc08g077110.4 Solanum lycopersicum HOM05D000010 ORTHO05D000063 1.8e-31 140.2 202 41.6
VMungo0251G0906 Vigna mungo HOM05D000010 ORTHO05D000063 1.8e-31 140.2 210 40.5
Sopen08g025690 Solanum pennellii HOM05D000010 ORTHO05D000063 2.3e-31 139.8 202 41.1
PGSC0003DMG400017505 Solanum tuberosum HOM05D000010 ORTHO05D000063 2.3e-31 139.8 202 41.6
ClCG09G012160 Citrullus lanatus HOM05D000010 ORTHO05D000063 3.9e-31 139.0 193 40.4
Glyma.17G154100 Glycine max HOM05D000010 ORTHO05D000063 6.7e-31 138.3 204 40.2
ECA240G3972 Erigeron canadensis HOM05D000010 ORTHO05D000063 8.8e-31 137.9 206 45.1
TWI15G0592 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 8.8e-31 137.9 196 41.3
HanXRQChr03g0085841 Helianthus annuus HOM05D000010 ORTHO05D000063 1.5e-30 137.1 201 44.8
DCAR_024974 Daucus carota HOM05D000010 ORTHO05D000063 2.0e-30 136.7 205 42.4
Duzib084G0346 Durio zibethinus HOM05D000010 ORTHO05D000063 2.6e-30 136.3 212 40.6
Gorai.004G186700 Gossypium raimondii HOM05D000010 ORTHO05D000063 3.3e-30 136.0 201 42.3
Medtr5g014300 Medicago truncatula HOM05D000010 ORTHO05D000063 4.3e-30 135.6 203 41.9
CAN.G201.16 Capsicum annuum HOM05D000010 ORTHO05D000063 5.7e-30 135.2 199 39.7
arahy.Tifrunner.gnm1.ann1.76LABN Arachis hypogaea HOM05D000010 ORTHO05D000063 1.3e-29 134.0 208 40.9
arahy.Tifrunner.gnm1.ann1.U16Y2L Arachis hypogaea HOM05D000010 ORTHO05D000063 1.3e-29 134.0 208 40.9
Prupe.5G040400 Prunus persica HOM05D000010 ORTHO05D000063 1.7e-29 133.7 203 39.4
Gohir.D08G178500 Gossypium hirsutum HOM05D000010 ORTHO05D000063 2.8e-29 132.9 201 41.3
Gorai.008G227800 Gossypium raimondii HOM05D000010 ORTHO05D000063 2.8e-29 132.9 201 42.3
Gohir.D12G212200 Gossypium hirsutum HOM05D000010 ORTHO05D000063 4.8e-29 132.1 201 42.3
MELO3C003390.2 Cucumis melo HOM05D000010 ORTHO05D000063 6.3e-29 131.7 197 40.1
Gohir.A08G158200 Gossypium hirsutum HOM05D000010 ORTHO05D000063 1.1e-28 131.0 201 40.8
Gohir.A12G209500 Gossypium hirsutum HOM05D000010 ORTHO05D000063 1.4e-28 130.6 201 41.3
EL10Ac5g12170 Beta vulgaris HOM05D000010 ORTHO05D000063 3.1e-28 129.4 196 38.8
Nitab4.5_0014378g0010 Nicotiana tabacum HOM05D000010 ORTHO05D000063 3.1e-28 129.4 200 39.5
Hund14418 Selenicereus undatus HOM05D000010 ORTHO05D000063 3.1e-28 129.4 196 40.8
Psat2g173520 Pisum sativum HOM05D000010 ORTHO05D000063 4.1e-28 129.0 203 39.9
CANSAT21G1193 Cannabis sativa HOM05D000010 ORTHO05D000063 5.3e-28 128.6 169 43.2
Ah.12g054600 Amaranthus hybridus HOM05D000010 ORTHO05D000063 1.2e-27 127.5 194 40.2
Ca_24645_v3 Cicer arietinum L. HOM05D000010 ORTHO05D000063 1.5e-27 127.1 206 41.3
TPR.G7815 Trifolium pratense HOM05D000010 ORTHO05D000063 2.0e-27 126.7 203 40.9
Nitab4.5_0003100g0030 Nicotiana tabacum HOM05D000010 ORTHO05D000063 2.6e-27 126.3 200 38.5
AUR62007247 Chenopodium quinoa HOM05D000010 ORTHO05D000063 2.9e-26 122.9 196 38.3
Phvul.003G229600 Phaseolus vulgaris HOM05D000010 ORTHO05D000063 3.8e-26 122.5 204 38.7
Lj4g0010062 Lotus japonicus HOM05D000010 ORTHO05D000063 5.0e-26 122.1 199 37.7
Medtr4g098630 Medicago truncatula HOM05D000010 ORTHO05D000063 2.5e-25 119.8 195 39.0
TPR.G28664 Trifolium pratense HOM05D000010 ORTHO05D000063 2.5e-25 119.8 203 37.4
COL.COLO4_17071 Corchorus olitorius HOM05D000010 ORTHO05D000063 4.2e-25 119.0 213 39.4
QL12p006208 Quercus lobata HOM05D000010 ORTHO05D000063 9.4e-25 117.9 202 38.6
Lalb_Chr16g0379181 Lupinus albus HOM05D000010 ORTHO05D000063 1.6e-24 117.1 182 43.4
Sopen06g021280 Solanum pennellii HOM05D000010 ORTHO05D000063 1.6e-24 117.1 203 35.5
Eucgr.D02182 Eucalyptus grandis HOM05D000010 ORTHO05D000063 2.1e-24 116.7 195 36.4
Lj2g0012727 Lotus japonicus HOM05D000010 ORTHO05D000063 4.7e-24 115.5 179 41.3
Nitab4.5_0000535g0120 Nicotiana tabacum HOM05D000010 ORTHO05D000063 1.8e-23 113.6 193 37.3
Oeu001188.1 Olea europaea HOM05D000010 ORTHO05D000063 2.3e-23 113.2 191 40.8
Solyc06g061080.3 Solanum lycopersicum HOM05D000010 ORTHO05D000063 2.3e-23 113.2 203 35.0
AUR62018752 Chenopodium quinoa HOM05D000010 ORTHO05D000063 6.7e-23 111.7 196 35.7
PGR031G0073 Punica granatum HOM05D000010 ORTHO05D000063 1.5e-22 110.5 213 40.8
arahy.Tifrunner.gnm1.ann1.CSHQ77 Arachis hypogaea HOM05D000010 ORTHO05D000063 3.3e-22 109.4 200 36.5
Nitab4.5_0007026g0040 Nicotiana tabacum HOM05D000010 ORTHO05D000063 9.7e-22 107.8 202 34.7
Peaxi162Scf00102g00626 Petunia axillaris HOM05D000010 ORTHO05D000063 1.3e-21 107.5 191 36.6
Ca_22063_v3 Cicer arietinum L. HOM05D000010 ORTHO05D000063 2.8e-21 106.3 208 35.6
PSO782G4105 Papaver somniferum HOM05D000010 ORTHO05D000063 8.2e-21 104.8 200 35.5
Dinv28933 Davidia involucrata HOM05D000010 ORTHO05D000063 4.1e-20 102.4 125 47.2
PSO063G0265 Papaver somniferum HOM05D000010 ORTHO05D000063 4.1e-20 102.4 200 35.5
Gorai.003G180600 Gossypium raimondii HOM05D000010 ORTHO05D000063 5.3e-20 102.1 200 34.5
Gohir.A03G002000 Gossypium hirsutum HOM05D000010 ORTHO05D000063 7.0e-20 101.7 200 35.5
Gohir.D03G170300 Gossypium hirsutum HOM05D000010 ORTHO05D000063 9.1e-20 101.3 200 35.0
Cpa.g.sc90.52 Carica papaya HOM05D000010 ORTHO05D000063 1.2e-19 100.9 198 37.4
PGR042G2407 Punica granatum HOM05D000010 ORTHO05D000063 1.7e-18 97.1 178 37.1
Oeu005299.1 Olea europaea HOM05D000010 ORTHO05D000063 6.5e-18 95.1 174 40.2
MBI04_g22955_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D000063 7.2e-17 91.7 189 36.0
arahy.Tifrunner.gnm1.ann1.1I167B Arachis hypogaea HOM05D000010 ORTHO05D000063 9.4e-17 91.3 163 38.0
HanXRQChr13g0416701 Helianthus annuus HOM05D000010 ORTHO05D000063 1.6e-16 90.5 189 34.4
Lsat_1_v5_gn_6_64840 Lactuca sativa HOM05D000010 ORTHO05D000063 2.1e-16 90.1 203 37.9
ECA233G4398 Erigeron canadensis HOM05D000010 ORTHO05D000063 4.7e-16 89.0 202 34.7
MD16G1276900 Malus domestica HOM05D000010 ORTHO05D000063 6.1e-16 88.6 116 42.2
Gohir.A11G030100 Gossypium hirsutum HOM05D000010 ORTHO05D000063 2.0e-14 83.6 181 36.5
Aqoxy3G02458 Aquilegia oxysepala HOM05D000010 ORTHO05D000063 3.3e-14 82.8 194 35.1
Gohir.D11G028700 Gossypium hirsutum HOM05D000010 ORTHO05D000063 4.4e-14 82.4 180 36.7
Gorai.007G031300 Gossypium raimondii HOM05D000010 ORTHO05D000063 5.7e-14 82.0 180 36.1
Aa31LG6G730 Aethionema arabicum HOM05D000010 ORTHO05D000063 1.0e-10 71.2 167 33.5
FAN15G0278 Fragaria x ananassa HOM05D000349 ORTHO05D011776 2.2e-10 70.1 78 47.4
CARHR224750 Cardamine hirsuta HOM05D000010 ORTHO05D000063 6.5e-10 68.6 192 34.4
AT4G17980 Arabidopsis thaliana HOM05D000010 ORTHO05D000063 1.1e-09 67.8 194 33.0
Sed0001300 Sechium edule HOM05D000010 ORTHO05D000063 1.1e-09 67.8 127 35.4
THA.LOC104827746 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 1.5e-09 67.4 162 34.6
AT5G46590 Arabidopsis thaliana HOM05D000010 ORTHO05D000063 3.2e-09 66.2 137 35.0
AL7G36520 Arabidopsis lyrata HOM05D000010 ORTHO05D000063 5.5e-09 65.5 192 32.3
BcaC06g33613 Brassica carinata HOM05D000010 ORTHO05D000063 9.4e-09 64.7 166 34.3
C07p49330 Brassica napus HOM05D000010 ORTHO05D000063 9.4e-09 64.7 166 34.3
BolC7t45440H Brassica oleracea HOM05D000010 ORTHO05D000063 9.4e-09 64.7 166 34.3
Sp7g16130 Schrenkiella parvula HOM05D000010 ORTHO05D000063 9.4e-09 64.7 164 33.5
BcaNung00039 Brassica carinata HOM05D000010 ORTHO05D000063 1.2e-08 64.3 168 36.3
Carub.0007s2336 Capsella rubella HOM05D000010 ORTHO05D000063 1.6e-08 63.9 194 31.4
A01p10010 Brassica napus HOM05D000010 ORTHO05D000063 2.7e-08 63.2 132 39.4
THA.LOC104806103 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 2.7e-08 63.2 156 34.0
Sp2g11420 Schrenkiella parvula HOM05D000010 ORTHO05D000063 3.6e-08 62.8 132 38.6
BraA01t00945Z Brassica rapa HOM05D000010 ORTHO05D000063 8.0e-08 61.6 132 38.6
BcaC09g51564 Brassica carinata HOM05D000010 ORTHO05D000063 1.0e-07 61.2 132 37.1
A03p50910 Brassica napus HOM05D000010 ORTHO05D000063 1.0e-07 61.2 133 36.1
C01p11810 Brassica napus HOM05D000010 ORTHO05D000063 1.0e-07 61.2 136 37.5
BraA03t14178Z Brassica rapa HOM05D000010 ORTHO05D000063 1.0e-07 61.2 133 36.1
Thhalv10001200m.g Eutrema salsugineum HOM05D000010 ORTHO05D000063 1.0e-07 61.2 135 39.3
BcaC06g31464 Brassica carinata HOM05D000010 ORTHO05D000063 1.4e-07 60.8 135 36.3
BraA02t08029Z Brassica rapa HOM05D000010 ORTHO05D000063 1.4e-07 60.8 135 35.6
CARHR174990 Cardamine hirsuta HOM05D000010 ORTHO05D000063 1.4e-07 60.8 130 35.4
BolC1t01156H Brassica oleracea HOM05D000010 ORTHO05D000063 1.8e-07 60.5 132 37.1
AL8G11760 Arabidopsis lyrata HOM05D000010 ORTHO05D000063 2.3e-07 60.1 136 33.8
Thhalv10027064m.g Eutrema salsugineum HOM05D000010 ORTHO05D000063 2.3e-07 60.1 166 31.9
A02p30110 Brassica napus HOM05D000010 ORTHO05D000063 5.2e-07 58.9 135 35.6
C02p47580 Brassica napus HOM05D000010 ORTHO05D000063 2.0e-06 57.0 135 34.8
BolC2t10797H Brassica oleracea HOM05D000010 ORTHO05D000063 2.0e-06 57.0 135 34.8
BcaC06g34368 Brassica carinata HOM05D000010 ORTHO05D000063 9.8e-06 54.7 125 36.0
C07p29800 Brassica napus HOM05D000010 ORTHO05D000063 9.8e-06 54.7 125 36.0
BolC7t43531H Brassica oleracea HOM05D000010 ORTHO05D000063 9.8e-06 54.7 125 36.0


User provided reference genes

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