Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 4.4e-83 311.2 156 100.0
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 3.1e-44 182.2 159 62.9
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 1.2e-43 180.3 156 61.5
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 1.1e-41 173.7 157 60.5
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 3.9e-39 165.2 160 53.8
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.1e-38 163.7 157 56.1
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.1e-38 163.7 158 57.6
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.1e-38 163.7 158 57.6
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 1.1e-38 163.7 166 53.0
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.5e-38 162.5 157 54.8
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 3.3e-38 162.2 168 51.8
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 4.3e-38 161.8 166 51.8
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 5.7e-38 161.4 166 51.8
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 9.7e-38 160.6 159 53.5
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 4.8e-37 158.3 165 54.5
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 8.2e-37 157.5 157 56.7
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 8.2e-37 157.5 167 51.5
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 8.2e-37 157.5 168 51.8
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 1.1e-36 157.1 157 55.4
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 1.4e-36 156.8 165 53.3
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 1.4e-36 156.8 158 53.2
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 2.4e-36 156.0 170 50.6
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 4.1e-36 155.2 160 51.2
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 6.9e-36 154.5 165 55.8
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 2.6e-35 152.5 163 54.6
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 7.7e-35 151.0 160 51.9
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 1.0e-34 150.6 165 50.9
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 1.0e-34 150.6 147 55.1
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.0e-34 150.6 158 53.2
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 1.3e-34 150.2 160 50.0
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 1.7e-34 149.8 157 52.2
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 2.2e-34 149.4 162 53.7
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 2.2e-34 149.4 160 51.2
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 2.9e-34 149.1 159 49.7
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 3.8e-34 148.7 157 51.0
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 5.0e-34 148.3 159 50.3
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.4e-33 146.7 161 52.2
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 1.9e-33 146.4 161 49.1
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 2.5e-33 146.0 161 48.4
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 2.5e-33 146.0 158 51.3
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 3.2e-33 145.6 165 52.1
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 3.2e-33 145.6 164 51.2
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 4.2e-33 145.2 158 50.6
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 4.2e-33 145.2 161 48.4
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 5.5e-33 144.8 159 50.9
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 5.5e-33 144.8 159 50.9
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 7.2e-33 144.4 161 52.2
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.2e-32 143.7 162 51.9
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 2.1e-32 142.9 159 51.6
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 2.7e-32 142.5 159 50.3
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 2.7e-32 142.5 166 50.0
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 3.6e-32 142.1 161 50.3
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 4.6e-32 141.7 171 49.1
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 4.6e-32 141.7 162 50.6
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 4.6e-32 141.7 157 50.3
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 6.1e-32 141.4 162 50.6
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 6.1e-32 141.4 174 46.6
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 7.9e-32 141.0 167 47.3
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 1.4e-31 140.2 198 41.9
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.4e-31 140.2 158 51.9
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 1.4e-31 140.2 157 48.4
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.8e-31 139.8 158 51.3
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 1.1e-30 137.1 161 47.2
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 1.5e-30 136.7 193 41.5
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 2.0e-30 136.3 165 49.1
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 2.5e-30 136.0 153 47.1
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 2.5e-30 136.0 164 51.2
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 4.3e-30 135.2 169 45.6
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 4.3e-30 135.2 194 41.2
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 5.7e-30 134.8 168 48.2
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 7.4e-30 134.4 166 46.4
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 1.3e-29 133.7 162 50.0
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 1.7e-29 133.3 164 48.2
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 1.7e-29 133.3 161 46.0
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 8.2e-29 131.0 169 45.6
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 8.2e-29 131.0 171 45.6
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 1.1e-28 130.6 162 45.7
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 1.1e-28 130.6 162 45.7
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 1.4e-28 130.2 163 44.8
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 4.1e-28 128.6 163 44.2
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 5.3e-28 128.3 167 45.5
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 6.9e-28 127.9 163 44.2
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 6.9e-28 127.9 166 44.6
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 6.9e-28 127.9 203 39.9
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 9.1e-28 127.5 157 45.9
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 9.1e-28 127.5 157 45.9
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 2.6e-27 125.9 160 46.2
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 2.6e-27 125.9 162 43.8
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 4.5e-27 125.2 160 46.9
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 4.5e-27 125.2 162 48.1
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 5.9e-27 124.8 166 44.0
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 1.0e-26 124.0 165 45.5
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 1.7e-26 123.2 158 46.2
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 2.2e-26 122.9 157 43.3
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 2.9e-26 122.5 177 43.5
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 5.0e-26 121.7 168 44.0
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 6.5e-26 121.3 163 42.3
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 6.5e-26 121.3 163 42.3
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 6.5e-26 121.3 247 34.0
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 8.5e-26 120.9 157 44.6
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 8.5e-26 120.9 146 49.3
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 2.5e-25 119.4 157 42.0
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 3.2e-25 119.0 157 45.2
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 3.2e-25 119.0 157 44.6
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 5.5e-25 118.2 226 38.9
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 1.2e-24 117.1 270 32.6
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 1.6e-24 116.7 161 41.0
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 1.6e-24 116.7 164 43.3
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 3.6e-24 115.5 160 40.6
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 3.6e-24 115.5 164 42.1
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 3.0e-23 112.5 154 44.2
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 3.0e-23 112.5 224 36.6
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 3.9e-23 112.1 171 44.4
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 3.9e-23 112.1 175 39.4
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 2.0e-22 109.8 157 41.4
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 2.6e-22 109.4 175 39.4
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 2.2e-21 106.3 119 50.4
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 2.2e-21 106.3 151 43.7
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 8.2e-21 104.4 164 39.6
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 1.4e-20 103.6 114 53.5
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 3.1e-20 102.4 84 60.7
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 1.3e-18 97.1 111 50.5
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 5.0e-18 95.1 83 53.0
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 5.0e-18 95.1 163 39.9
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 6.5e-18 94.7 104 49.0
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 1.1e-17 94.0 173 37.0
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 3.2e-17 92.4 161 39.1
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 4.2e-17 92.0 107 43.9
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 9.4e-17 90.9 159 39.0
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.6e-16 90.1 82 58.5
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 2.1e-16 89.7 158 38.6
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 2.7e-16 89.4 159 37.1
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 2.7e-16 89.4 110 44.5
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 2.7e-16 89.4 159 38.4
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 3.6e-16 89.0 158 38.6
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 3.6e-16 89.0 158 38.6
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 4.7e-16 88.6 154 35.7
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 1.0e-15 87.4 104 47.1
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 1.8e-15 86.7 110 42.7
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 1.8e-15 86.7 110 42.7
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 3.0e-15 85.9 161 37.3
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 6.7e-15 84.7 158 35.4
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 6.7e-15 84.7 146 39.7
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 1.5e-14 83.6 103 46.6
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 4.8e-13 78.6 82 48.8
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 1.8e-12 76.6 76 52.6
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 1.8e-12 76.6 125 38.4
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 3.1e-12 75.9 88 46.6
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.6e-11 73.6 88 40.9
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 1.6e-11 73.6 148 35.8
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 2.2e-10 69.7 82 45.1
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 2.2e-10 69.7 84 44.0
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 5.0e-10 68.6 67 58.2
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 4.2e-09 65.5 80 43.8
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 1.4e-07 60.5 113 36.3
Zm00001eb373750 Zea mays HOM05D009386 ORTHO05D011419 4.4e-06 55.5 55 47.3


User provided reference genes

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