Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 9.2e-57 223.4 118 100.0
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 2.8e-53 211.8 118 94.9
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 2.8e-53 211.8 118 94.1
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 3.6e-53 211.5 118 94.1
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 3.6e-53 211.5 118 94.1
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 3.6e-53 211.5 118 94.1
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 8.0e-53 210.3 118 91.5
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 1.0e-52 209.9 118 94.9
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 1.8e-52 209.1 118 91.5
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 2.3e-52 208.8 118 93.2
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 3.1e-52 208.4 118 94.1
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 3.1e-52 208.4 114 94.7
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 8.9e-52 206.8 118 92.4
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.5e-51 206.1 118 92.4
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.5e-51 206.1 118 92.4
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 1.5e-51 206.1 118 93.2
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 2.0e-51 205.7 114 93.9
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 2.0e-51 205.7 118 90.7
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 2.0e-51 205.7 118 92.4
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.6e-51 205.3 118 89.8
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 2.6e-51 205.3 112 92.9
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 4.4e-51 204.5 118 89.8
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 4.4e-51 204.5 118 89.8
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 4.4e-51 204.5 120 89.2
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 4.4e-51 204.5 120 88.3
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 5.8e-51 204.1 118 89.8
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 5.8e-51 204.1 118 90.7
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 7.5e-51 203.8 118 89.8
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 7.5e-51 203.8 119 90.8
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 9.8e-51 203.4 113 92.9
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 9.8e-51 203.4 118 93.2
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 1.3e-50 203.0 118 92.4
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 1.3e-50 203.0 118 89.0
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 1.3e-50 203.0 119 90.8
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 1.3e-50 203.0 113 92.0
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 1.7e-50 202.6 118 90.7
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 2.2e-50 202.2 115 91.3
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 2.9e-50 201.8 118 89.8
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 2.9e-50 201.8 118 91.5
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 2.9e-50 201.8 113 91.2
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 2.9e-50 201.8 113 93.8
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 2.9e-50 201.8 113 92.9
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 2.9e-50 201.8 115 89.6
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 2.9e-50 201.8 113 91.2
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 3.7e-50 201.4 113 92.9
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 6.4e-50 200.7 115 90.4
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 6.4e-50 200.7 118 89.0
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 6.4e-50 200.7 118 89.0
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 6.4e-50 200.7 112 92.0
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 8.3e-50 200.3 115 89.6
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 8.3e-50 200.3 113 92.0
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 8.3e-50 200.3 118 89.0
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 8.3e-50 200.3 118 89.0
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 8.3e-50 200.3 118 89.0
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 8.3e-50 200.3 115 88.7
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 8.3e-50 200.3 115 88.7
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 8.3e-50 200.3 115 88.7
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 1.1e-49 199.9 115 90.4
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 1.4e-49 199.5 115 89.6
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.9e-49 199.1 113 92.9
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 2.4e-49 198.7 113 91.2
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 2.4e-49 198.7 113 92.0
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 3.2e-49 198.4 113 91.2
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 4.1e-49 198.0 113 91.2
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 5.4e-49 197.6 113 90.3
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 5.4e-49 197.6 113 89.4
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 5.4e-49 197.6 113 89.4
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 7.0e-49 197.2 113 91.2
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 9.2e-49 196.8 113 90.3
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 9.2e-49 196.8 113 90.3
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 9.2e-49 196.8 113 90.3
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 9.2e-49 196.8 112 91.1
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 9.2e-49 196.8 113 90.3
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 9.2e-49 196.8 119 88.2
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 90.3
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 90.3
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 1.2e-48 196.4 120 87.5
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.6e-48 196.1 113 90.3
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 1.6e-48 196.1 118 85.6
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.6e-48 196.1 115 88.7
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 1.6e-48 196.1 118 88.1
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.6e-48 196.1 118 85.6
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 2.0e-48 195.7 114 89.5
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 2.7e-48 195.3 113 90.3
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 2.7e-48 195.3 113 90.3
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 2.7e-48 195.3 115 89.6
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 2.7e-48 195.3 111 92.8
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 3.5e-48 194.9 113 89.4
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 3.5e-48 194.9 113 89.4
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 3.5e-48 194.9 115 87.8
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 3.5e-48 194.9 115 87.8
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 3.5e-48 194.9 113 91.2
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 4.6e-48 194.5 113 89.4
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 4.6e-48 194.5 113 89.4
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 4.6e-48 194.5 115 87.8
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 4.6e-48 194.5 115 89.6
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 4.6e-48 194.5 120 87.5
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 6.0e-48 194.1 113 90.3
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 7.8e-48 193.7 113 88.5
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 7.8e-48 193.7 113 88.5
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 7.8e-48 193.7 115 88.7
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 1.0e-47 193.4 113 89.4
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 1.3e-47 193.0 120 85.0
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 5.0e-47 191.0 113 85.8
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 5.0e-47 191.0 110 90.9
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 6.6e-47 190.7 111 88.3
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 6.6e-47 190.7 110 90.0
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 6.6e-47 190.7 118 84.7
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 8.6e-47 190.3 113 87.6
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 8.6e-47 190.3 111 87.4
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 8.6e-47 190.3 115 84.3
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 1.1e-46 189.9 113 85.8
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 3.3e-46 188.3 115 83.5
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 9.5e-46 186.8 113 85.8
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 9.5e-46 186.8 111 87.4
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 1.2e-45 186.4 105 91.4
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 1.2e-45 186.4 115 80.0
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 1.2e-45 186.4 115 85.2
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 2.8e-45 185.3 114 85.1
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 6.2e-45 184.1 123 82.1
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 1.4e-44 183.0 110 86.4
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 3.1e-44 181.8 151 68.9
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 4.0e-44 181.4 113 85.0
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 6.8e-44 180.6 109 87.2
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 6.8e-44 180.6 113 83.2
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 1.2e-43 179.9 113 80.5
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 2.6e-43 178.7 109 82.6
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 4.4e-43 177.9 112 78.6
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.1e-41 173.3 178 59.0
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 1.1e-41 173.3 114 71.9
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.3e-39 165.6 122 77.0
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 2.5e-38 162.2 108 74.1
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 1.2e-37 159.8 88 92.0
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 2.1e-37 159.1 89 87.6
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 4.7e-37 157.9 197 51.3
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 5.8e-35 151.0 85 90.6
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 5.4e-33 144.4 86 84.9
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 1.2e-32 143.3 85 88.2
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 2.7e-32 142.1 99 77.8
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 4.6e-32 141.4 86 86.0
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 4.6e-32 141.4 81 87.7
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 1.7e-31 139.4 72 91.7
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 8.6e-31 137.1 82 85.4
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 1.1e-30 136.7 85 82.4
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 5.6e-30 134.4 82 85.4
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 6.2e-29 131.0 105 69.5
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 6.2e-29 131.0 105 69.5
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 8.1e-29 130.6 67 95.5
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 3.8e-26 121.7 75 90.7
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 3.8e-26 121.7 109 57.8
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 8.4e-26 120.6 70 90.0
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 1.1e-25 120.2 80 81.2
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 1.9e-25 119.4 97 56.7
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 6.6e-23 110.9 72 80.6
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 8.7e-23 110.5 83 73.5
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 5.3e-20 101.3 75 68.0
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 1.7e-18 96.3 104 59.6
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 6.7e-15 84.3 51 80.4
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 4.9e-10 68.2 48 75.0
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 1.2e-08 63.5 47 74.5
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 1.2e-08 63.5 41 82.9
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 1.2e-08 63.5 41 82.9
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 2.7e-08 62.4 60 65.0
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 7.9e-08 60.8 43 79.1
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 7.4e-06 54.3 43 69.8


User provided reference genes

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