Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008156 Daucus carota HOM05D007037 ORTHO05D006691 2.6e-40 168.3 86 100.0
Nitab4.5_0009030g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 2.4e-22 108.6 81 67.9
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 7.0e-22 107.1 82 67.1
Nitab4.5_0000005g0340 Nicotiana tabacum HOM05D007037 ORTHO05D006691 9.1e-22 106.7 81 66.7
CSS0006945 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 5.9e-21 104.0 82 69.5
Hma1.2p1_0749F.1_g212630 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 7.7e-21 103.6 85 63.5
Hma1.2p1_0749F.1_g212635 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 7.7e-21 103.6 85 63.5
Oeu025269.1 Olea europaea HOM05D007037 ORTHO05D006691 8.5e-20 100.1 77 67.5
Peaxi162Scf00331g00119 Petunia axillaris HOM05D007037 ORTHO05D006691 3.2e-19 98.2 81 60.5
QL05p073032 Quercus lobata HOM05D007037 ORTHO05D006691 7.2e-19 97.1 82 59.8
TAR624G1029 Trochodendron aralioides HOM05D007037 ORTHO05D006691 2.1e-18 95.5 83 62.7
CSS0026389 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 3.6e-18 94.7 83 66.3
Nitab4.5_0005074g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 6.1e-18 94.0 80 61.2
Nitab4.5_0002827g0030 Nicotiana tabacum HOM05D007037 ORTHO05D006691 2.3e-17 92.0 80 58.8
RcHm_v2.0_Chr5g0002881 Rosa chinensis HOM05D007037 ORTHO05D006691 2.3e-17 92.0 79 62.0
CiPaw.09G092600 Carya illinoinensis HOM05D007037 ORTHO05D006691 4.0e-17 91.3 79 59.5
Prupe.4G019700 Prunus persica HOM05D007037 ORTHO05D006691 5.2e-17 90.9 77 59.7
Cc09_g01610 Coffea canephora HOM05D007037 ORTHO05D006691 6.8e-17 90.5 79 57.0
MD05G1347800 Malus domestica HOM05D007037 ORTHO05D006691 7.5e-16 87.0 79 54.4
Eucgr.E04050 Eucalyptus grandis HOM05D007037 ORTHO05D006691 1.3e-15 86.3 79 55.7
MD10G1322200 Malus domestica HOM05D007037 ORTHO05D006691 1.3e-15 86.3 78 59.0
FAN21G2981 Fragaria x ananassa HOM05D001191 ORTHO05D000979 1.7e-15 85.9 83 56.6
Manes.16G006400 Manihot esculenta HOM05D007037 ORTHO05D006691 1.7e-15 85.9 79 59.5
ECA234G0681 Erigeron canadensis HOM05D007037 ORTHO05D006691 4.8e-15 84.3 83 54.2
Lsat_1_v5_gn_4_60821 Lactuca sativa HOM05D007037 ORTHO05D006691 4.8e-15 84.3 78 57.7
Sopen02g011150 Solanum pennellii HOM05D007037 ORTHO05D006691 4.8e-15 84.3 83 54.2
FAN25G2740 Fragaria x ananassa HOM05D007037 ORTHO05D006691 8.3e-15 83.6 83 56.6
Manes.01G159201 Manihot esculenta HOM05D007037 ORTHO05D006691 8.3e-15 83.6 79 58.2
PGSC0003DMG400016450 Solanum tuberosum HOM05D007037 ORTHO05D006691 2.4e-14 82.0 81 55.6
PGSC0003DMG400019869 Solanum tuberosum HOM05D007037 ORTHO05D006691 2.4e-14 82.0 84 57.1
Potri.004G013601 Populus trichocarpa HOM05D007037 ORTHO05D006691 7.0e-14 80.5 77 54.5
Atru.chr10.2236 Acer truncatum HOM05D007037 ORTHO05D006691 9.1e-14 80.1 79 54.4
Gohir.A05G170900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 1.2e-13 79.7 79 51.9
Duzib192G0147 Durio zibethinus HOM05D007037 ORTHO05D006691 1.6e-13 79.3 79 51.9
Potri.011G004400 Populus trichocarpa HOM05D007037 ORTHO05D006691 2.0e-13 79.0 77 51.9
Aqoxy1G02111 Aquilegia oxysepala HOM05D007037 ORTHO05D006691 2.7e-13 78.6 75 60.0
Thecc.06G221700 Theobroma cacao HOM05D007037 ORTHO05D006691 2.7e-13 78.6 79 53.2
Sopen02g025300 Solanum pennellii HOM05D007037 ORTHO05D006691 7.7e-13 77.0 80 53.8
Medtr2g023440 Medicago truncatula HOM05D007037 ORTHO05D006691 1.7e-12 75.9 81 53.1
vmacro23211 Vaccinium macrocarpon HOM05D007037 ORTHO05D006691 3.8e-12 74.7 79 53.2
COL.COLO4_00342 Corchorus olitorius HOM05D007037 ORTHO05D006691 5.0e-12 74.3 78 48.7
Gohir.D05G173900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 6.6e-12 73.9 79 48.1
Gorai.009G179200 Gossypium raimondii HOM05D007037 ORTHO05D006691 6.6e-12 73.9 79 50.6
SalBow8G3366 Salvia bowleyana HOM05D007037 ORTHO05D006691 8.6e-12 73.6 68 61.8
TPR.G13436 Trifolium pratense HOM05D007037 ORTHO05D006691 1.1e-11 73.2 81 49.4
ClCG01G021940 Citrullus lanatus HOM05D007037 ORTHO05D006691 1.5e-11 72.8 78 52.6
Sed0008683 Sechium edule HOM05D007037 ORTHO05D006691 1.5e-11 72.8 78 51.3
Actinidia09718 Actinidia chinensis HOM05D007037 ORTHO05D006691 1.9e-11 72.4 80 50.0
Ca_26471_v3 Cicer arietinum L. HOM05D007037 ORTHO05D006691 2.5e-11 72.0 86 47.7
CsaV3_6G049020 Cucumis sativus L. HOM05D007037 ORTHO05D006691 5.5e-11 70.9 78 51.3
Peaxi162Scf01204g00120 Petunia axillaris HOM05D007037 ORTHO05D006691 7.2e-11 70.5 80 52.5
FvH4_3g01970 Fragaria vesca HOM05D007037 ORTHO05D006691 1.6e-10 69.3 83 48.2
arahy.Tifrunner.gnm1.ann1.98H95S Arachis hypogaea HOM05D007037 ORTHO05D006691 1.4e-09 66.2 85 47.1
Sed0010286 Sechium edule HOM05D007037 ORTHO05D006691 1.8e-09 65.9 78 47.4
CARHR012050 Cardamine hirsuta HOM05D007037 ORTHO05D006691 5.2e-09 64.3 83 43.4
Potri.014G153900 Populus trichocarpa HOM05D009550 ORTHO05D006691 5.2e-09 64.3 85 44.7
AT1G11740 Arabidopsis thaliana HOM05D001191 ORTHO05D000979 6.8e-09 63.9 83 43.4
CSS0005463 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 8.9e-09 63.5 92 43.5
arahy.Tifrunner.gnm1.ann1.CZMF37 Arachis hypogaea HOM05D007037 ORTHO05D006691 1.2e-08 63.2 84 45.2
BcaC05g25043 Brassica carinata HOM05D001191 ORTHO05D000979 1.2e-08 63.2 84 45.2
Carub.0001s1138 Capsella rubella HOM05D007037 ORTHO05D006691 1.2e-08 63.2 83 42.2
AL1G22910 Arabidopsis lyrata HOM05D001191 ORTHO05D000979 1.5e-08 62.8 83 42.2
Zm00001eb048920 Zea mays HOM05D007037 ORTHO05D006691 2.0e-08 62.4 79 45.6
vmacro15807 Vaccinium macrocarpon HOM05D007037 ORTHO05D006691 2.6e-08 62.0 88 43.2
Ciclev10018055m.g Citrus clementina HOM05D007037 ORTHO05D006691 3.4e-08 61.6 80 43.8
Glyma.17G012900 Glycine max HOM05D007037 ORTHO05D006691 3.4e-08 61.6 79 44.3
Aa31LG1G3030 Aethionema arabicum HOM05D007037 ORTHO05D006691 5.7e-08 60.8 80 43.8
C05p09860 Brassica napus HOM05D007037 ORTHO05D006691 5.7e-08 60.8 84 44.0
Gohir.D13G171150 Gossypium hirsutum HOM05D007037 ORTHO05D006691 5.7e-08 60.8 79 46.8
Gorai.013G189700 Gossypium raimondii HOM05D007037 ORTHO05D006691 5.7e-08 60.8 79 46.8
Cc05_g04380 Coffea canephora HOM05D007037 ORTHO05D006691 7.5e-08 60.5 75 50.7
Migut.M01325 Erythranthe guttata HOM05D007037 ORTHO05D006691 7.5e-08 60.5 79 45.6
Gohir.D13G171533 Gossypium hirsutum HOM05D007037 ORTHO05D006691 7.5e-08 60.5 77 46.8
A06p08290 Brassica napus HOM05D007037 ORTHO05D006691 9.8e-08 60.1 83 39.8
Cfa000214 Carpinus fangiana HOM05D007037 ORTHO05D006691 9.8e-08 60.1 80 46.2
Rhsim13G0153300 Rhododendron simsii HOM05D007037 ORTHO05D006691 9.8e-08 60.1 79 48.1
Glyma.07G261100 Glycine max HOM05D007037 ORTHO05D006691 1.3e-07 59.7 79 41.8
Glyma.09G004000 Glycine max HOM05D007037 ORTHO05D006691 1.3e-07 59.7 79 40.5
HanXRQChr16g0506491 Helianthus annuus HOM05D007037 ORTHO05D006691 1.3e-07 59.7 75 45.3
Sp1g10350 Schrenkiella parvula HOM05D001191 ORTHO05D000979 1.3e-07 59.7 84 44.0
THA.LOC104823525 Tarenaya hassleriana HOM05D007037 ORTHO05D006691 1.3e-07 59.7 85 42.4
TPR.G37004 Trifolium pratense HOM05D007037 ORTHO05D006691 1.3e-07 59.7 77 45.5
TAR626G0921 Trochodendron aralioides HOM05D007037 ORTHO05D006691 1.3e-07 59.7 62 54.8
Thhalv10009555m.g Eutrema salsugineum HOM05D001191 ORTHO05D000979 1.7e-07 59.3 83 42.2
AT1G62045 Arabidopsis thaliana HOM05D007037 ORTHO05D006691 2.2e-07 58.9 83 41.0
Phvul.003G079400 Phaseolus vulgaris HOM05D007037 ORTHO05D006691 2.8e-07 58.5 79 41.8
Lj4g0019440 Lotus japonicus HOM05D007037 ORTHO05D006691 3.7e-07 58.2 79 48.1
Rhsim02G0106600 Rhododendron simsii HOM05D007037 ORTHO05D006691 3.7e-07 58.2 90 40.0
AL2G13860 Arabidopsis lyrata HOM05D007037 ORTHO05D006691 4.9e-07 57.8 83 39.8
Haze_06807 Corylus avellana HOM05D007037 ORTHO05D006691 4.9e-07 57.8 80 45.0
Sabra11G0003500 Salix brachista HOM05D007037 ORTHO05D006691 4.9e-07 57.8 78 41.0
CiPaw.10G071700 Carya illinoinensis HOM05D007037 ORTHO05D006691 6.3e-07 57.4 79 40.5
Lj6g0006723 Lotus japonicus HOM05D007037 ORTHO05D006691 8.3e-07 57.0 79 43.0
CiPaw.03G159600 Carya illinoinensis HOM05D007037 ORTHO05D006691 1.1e-06 56.6 83 48.2
Ca_21080_v3 Cicer arietinum L. HOM05D007037 ORTHO05D006691 1.1e-06 56.6 79 43.0
Gohir.D11G101450 Gossypium hirsutum HOM05D007037 ORTHO05D006691 1.1e-06 56.6 79 43.0
Gorai.007G108200 Gossypium raimondii HOM05D007037 ORTHO05D006691 1.1e-06 56.6 79 43.0
Sabra04G0006400 Salix brachista HOM05D007037 ORTHO05D006691 1.4e-06 56.2 77 42.9
EL10Ac8g20067 Beta vulgaris HOM05D007037 ORTHO05D006691 2.4e-06 55.5 78 41.0
Aqoxy4G01827 Aquilegia oxysepala HOM05D009550 ORTHO05D006691 3.1e-06 55.1 85 45.9
A09p16540 Brassica napus HOM05D007037 ORTHO05D006691 3.1e-06 55.1 84 45.2
BraA09t37292Z Brassica rapa HOM05D007037 ORTHO05D006691 3.1e-06 55.1 84 45.2
Gohir.A11G096766 Gossypium hirsutum HOM05D007037 ORTHO05D006691 4.1e-06 54.7 79 41.8
unitig_32.g11533 Utricularia gibba HOM05D007037 ORTHO05D006691 4.1e-06 54.7 79 39.2
Lalb_Chr07g0177181 Lupinus albus HOM05D007037 ORTHO05D006691 5.4e-06 54.3 78 46.2
Nn1g07147 Nelumbo nucifera HOM05D009550 ORTHO05D006691 7.0e-06 53.9 86 39.5
DCAR_019271 Daucus carota HOM05D007037 ORTHO05D006691 9.2e-06 53.5 80 38.8
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 9.2e-06 53.5 72 45.8


User provided reference genes

Program Settings