Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 5.2e-67 257.7 140 100.0
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 2.8e-52 208.8 141 83.7
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 8.1e-52 207.2 141 83.7
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.4e-51 206.5 140 82.1
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.4e-51 206.5 140 82.1
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.3e-51 205.7 141 83.0
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 8.9e-51 203.8 140 80.0
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 1.2e-50 203.4 140 81.4
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 1.5e-50 203.0 140 82.1
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 2.6e-50 202.2 140 76.4
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 3.4e-50 201.8 140 77.9
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 5.8e-50 201.1 140 80.0
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 1.7e-49 199.5 141 77.3
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 2.2e-49 199.1 140 79.3
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 2.2e-49 199.1 141 80.9
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.9e-49 198.7 141 79.4
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.9e-49 198.7 141 79.4
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 6.4e-49 197.6 141 79.4
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 6.4e-49 197.6 141 78.7
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 8.4e-49 197.2 141 78.7
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 8.4e-49 197.2 140 77.1
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 1.1e-48 196.8 141 77.3
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 1.4e-48 196.4 141 78.0
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 1.4e-48 196.4 141 75.9
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 1.9e-48 196.1 141 75.2
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 1.9e-48 196.1 141 78.0
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 4.1e-48 194.9 141 78.0
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 5.4e-48 194.5 141 78.0
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 5.4e-48 194.5 141 78.0
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 7.1e-48 194.1 140 74.3
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 7.1e-48 194.1 141 78.7
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 9.2e-48 193.7 140 77.1
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.2e-47 193.4 141 77.3
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 1.2e-47 193.4 140 78.6
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.6e-47 193.0 141 77.3
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 1.6e-47 193.0 141 76.6
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 1.6e-47 193.0 141 76.6
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 2.1e-47 192.6 140 74.3
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 2.1e-47 192.6 140 73.6
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 2.7e-47 192.2 140 75.0
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 3.5e-47 191.8 140 74.3
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 3.5e-47 191.8 141 76.6
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 3.5e-47 191.8 147 73.5
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 3.5e-47 191.8 140 74.3
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 4.6e-47 191.4 140 72.9
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 4.6e-47 191.4 143 72.7
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 6.0e-47 191.0 142 76.1
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 6.0e-47 191.0 141 76.6
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 7.8e-47 190.7 144 73.6
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.0e-46 190.3 141 76.6
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 1.0e-46 190.3 164 67.1
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 1.0e-46 190.3 140 76.4
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.0e-46 190.3 140 72.9
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 1.3e-46 189.9 140 75.7
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.3e-46 189.9 141 77.3
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 1.3e-46 189.9 141 75.2
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 1.7e-46 189.5 144 72.9
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 1.7e-46 189.5 141 75.9
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 2.3e-46 189.1 139 76.3
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 3.0e-46 188.7 140 75.7
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 3.0e-46 188.7 141 75.2
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.9e-46 188.3 141 73.8
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 5.1e-46 188.0 141 75.2
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 6.6e-46 187.6 141 74.5
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 6.6e-46 187.6 141 74.5
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 6.6e-46 187.6 140 75.7
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 6.6e-46 187.6 140 75.0
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 6.6e-46 187.6 140 75.0
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 8.6e-46 187.2 140 72.9
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 8.6e-46 187.2 141 74.5
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 8.6e-46 187.2 141 74.5
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 1.5e-45 186.4 140 75.0
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 1.5e-45 186.4 141 73.8
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.5e-45 186.4 140 75.7
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 2.5e-45 185.7 140 70.7
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 2.5e-45 185.7 140 75.0
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.3e-45 185.3 141 73.0
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 3.3e-45 185.3 140 75.0
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 4.3e-45 184.9 140 70.7
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 5.6e-45 184.5 139 74.1
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 7.3e-45 184.1 141 75.9
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 1.2e-44 183.3 149 69.8
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 1.2e-44 183.3 141 75.2
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 6.2e-44 181.0 148 70.3
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 8.1e-44 180.6 160 65.0
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.8e-43 179.5 140 73.6
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 2.4e-43 179.1 151 67.5
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 2.4e-43 179.1 151 67.5
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.1e-43 178.7 144 70.8
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 3.1e-43 178.7 141 70.2
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 1.2e-42 176.8 155 68.4
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 1.5e-42 176.4 141 71.6
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.0e-42 176.0 144 69.4
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 7.6e-42 174.1 140 71.4
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 1.3e-41 173.3 141 70.9
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 1.7e-41 172.9 152 65.1
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 2.2e-41 172.6 140 69.3
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 3.8e-41 171.8 155 63.9
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 3.8e-41 171.8 155 63.9
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 2.4e-40 169.1 174 59.8
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 3.2e-40 168.7 146 67.1
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 7.1e-40 167.5 138 68.8
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 9.3e-40 167.2 148 67.6
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 1.6e-39 166.4 168 58.9
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 2.1e-39 166.0 176 56.8
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 4.6e-39 164.9 138 67.4
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 1.3e-38 163.3 115 80.0
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 3.9e-38 161.8 115 79.1
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 3.3e-37 158.7 136 66.2
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 5.6e-37 157.9 138 64.5
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 1.6e-36 156.4 116 75.9
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 8.1e-36 154.1 141 63.1
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 8.1e-36 154.1 119 72.3
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 5.3e-35 151.4 140 60.0
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 2.0e-34 149.4 116 72.4
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 7.6e-34 147.5 168 53.6
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 8.4e-33 144.1 118 69.5
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 8.4e-33 144.1 127 68.5
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 2.4e-32 142.5 114 71.1
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 4.2e-32 141.7 140 59.3
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 6.0e-31 137.9 169 53.3
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 3.0e-30 135.6 138 56.5
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 1.5e-29 133.3 138 59.4
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 3.3e-29 132.1 131 60.3
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 7.4e-29 131.0 138 59.4
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 9.6e-29 130.6 112 66.1
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 4.8e-28 128.3 97 70.1
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 1.2e-26 123.6 155 52.3
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.6e-26 122.5 113 63.7
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.3e-25 120.2 81 84.0
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 1.9e-24 116.3 137 51.1
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 4.2e-24 115.2 128 59.4
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 4.2e-24 115.2 118 59.3
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.2e-24 115.2 80 81.2
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 4.2e-24 115.2 80 78.8
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 9.3e-24 114.0 80 80.0
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 2.1e-23 112.8 77 83.1
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 6.0e-23 111.3 76 81.6
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 5.1e-22 108.2 138 50.0
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 5.1e-22 108.2 87 70.1
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.5e-21 106.7 69 79.7
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 2.5e-21 105.9 87 69.0
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 4.8e-20 101.7 69 79.7
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 3.8e-17 92.0 134 47.0
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.7e-15 85.9 72 65.3
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 3.5e-15 85.5 69 71.0
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 4.6e-15 85.1 102 56.9
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 7.9e-15 84.3 71 66.2
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.0e-14 84.0 60 76.7
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 9.6e-13 77.4 57 75.4
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 1.6e-12 76.6 72 61.1
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 1.6e-12 76.6 72 61.1
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 3.4e-10 68.9 77 54.5
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 5.0e-09 65.1 133 37.6
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 7.2e-08 61.2 63 55.6
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 3.6e-07 58.9 97 43.3
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 3.6e-07 58.9 97 43.3
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 2.3e-06 56.2 46 60.9
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 2.3e-06 56.2 44 63.6
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 3.9e-06 55.5 46 60.9
BcaB02g10679 Brassica carinata HOM05D004301 ORTHO05D005124 8.7e-06 54.3 56 57.1


User provided reference genes

Program Settings