Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008138 Daucus carota HOM05D004992 ORTHO05D006004 1.4e-60 236.1 117 100.0
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 2.1e-13 79.3 125 37.6
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 8.1e-13 77.4 125 37.6
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 7.5e-11 70.9 129 38.0
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 2.2e-10 69.3 120 35.0
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 2.9e-10 68.9 120 35.0
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 3.7e-10 68.6 115 40.0
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 3.7e-10 68.6 102 36.3
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 6.4e-10 67.8 126 33.3
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 6.4e-10 67.8 126 33.3
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 8.3e-10 67.4 121 36.4
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 8.3e-10 67.4 125 36.8
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 1.1e-09 67.0 115 35.7
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.1e-09 67.0 125 34.4
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 2.4e-09 65.9 113 34.5
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 2.4e-09 65.9 119 36.1
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.4e-09 65.9 103 37.9
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 3.2e-09 65.5 123 35.8
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 3.2e-09 65.5 111 36.0
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 4.1e-09 65.1 118 33.9
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 9.2e-09 63.9 107 39.3
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 1.2e-08 63.5 122 33.6
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 1.6e-08 63.2 103 37.9
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 1.6e-08 63.2 122 35.2
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 1.6e-08 63.2 110 35.5
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 1.6e-08 63.2 121 33.9
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 2.1e-08 62.8 121 35.5
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 2.1e-08 62.8 112 33.9
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 2.7e-08 62.4 118 36.4
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.7e-08 62.4 103 37.9
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.7e-08 62.4 82 43.9
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 3.5e-08 62.0 120 33.3
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 3.5e-08 62.0 74 43.2
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 6.0e-08 61.2 120 32.5
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 6.0e-08 61.2 114 34.2
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 6.0e-08 61.2 102 33.3
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 7.8e-08 60.8 106 37.7
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 1.3e-07 60.1 106 34.9
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.3e-07 60.1 113 36.3
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.3e-07 60.1 113 36.3
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.3e-07 60.1 99 36.4
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.3e-07 60.1 99 36.4
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 1.7e-07 59.7 107 40.2
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 2.3e-07 59.3 123 33.3
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.3e-07 59.3 99 35.4
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.3e-07 59.3 117 32.5
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 3.0e-07 58.9 105 36.2
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 3.0e-07 58.9 105 35.2
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 3.9e-07 58.5 125 32.8
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 3.9e-07 58.5 116 35.3
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 3.9e-07 58.5 107 33.6
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 5.1e-07 58.2 127 36.2
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 5.1e-07 58.2 119 34.5
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 6.6e-07 57.8 99 37.4
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 8.6e-07 57.4 96 32.3
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 8.6e-07 57.4 101 35.6
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 1.1e-06 57.0 105 34.3
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 1.1e-06 57.0 95 37.9
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 1.1e-06 57.0 125 32.0
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 1.1e-06 57.0 103 36.9
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 1.1e-06 57.0 121 29.8
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.1e-06 57.0 97 37.1
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 1.1e-06 57.0 123 31.7
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.9e-06 56.2 107 35.5
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.9e-06 56.2 122 32.8
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 2.5e-06 55.8 127 34.6
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 3.3e-06 55.5 114 38.6
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 3.3e-06 55.5 118 32.2
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 3.3e-06 55.5 122 32.8
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 3.3e-06 55.5 107 32.7
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 3.3e-06 55.5 106 32.1
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 3.3e-06 55.5 121 35.5
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 3.3e-06 55.5 105 34.3
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 4.3e-06 55.1 103 34.0
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 4.3e-06 55.1 122 28.7
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 4.3e-06 55.1 104 37.5
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 4.3e-06 55.1 108 32.4
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 5.6e-06 54.7 115 36.5
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 5.6e-06 54.7 115 36.5
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 5.6e-06 54.7 125 30.4
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 5.6e-06 54.7 96 31.2
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 7.3e-06 54.3 108 36.1
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 7.3e-06 54.3 120 31.7
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 9.5e-06 53.9 110 34.5
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 9.5e-06 53.9 109 34.9
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 9.5e-06 53.9 109 34.9
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 9.5e-06 53.9 77 39.0


User provided reference genes

Program Settings