Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008134 Daucus carota HOM05D007956 ORTHO05D010152 2.4e-180 635.6 368 100.0
TWI38G0189 Tripterygium wilfordii HOM05D007956 ORTHO05D010152 5.2e-90 335.5 367 46.9
Oeu002723.1 Olea europaea HOM05D007956 ORTHO05D010152 1.4e-87 327.4 366 47.0
Cc02_g11640 Coffea canephora HOM05D007956 ORTHO05D010152 4.7e-83 312.4 366 45.6
Sabra04G0011500 Salix brachista HOM05D007956 ORTHO05D010152 5.7e-81 305.4 363 44.4
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 2.7e-78 296.6 365 43.0
SalBow8G0305 Salvia bowleyana HOM05D007956 ORTHO05D010152 2.9e-77 293.1 371 43.9
Migut.M01290 Erythranthe guttata HOM05D007956 ORTHO05D010152 6.6e-77 292.0 367 50.4
Nn1g07048 Nelumbo nucifera HOM05D007956 ORTHO05D010152 1.5e-76 290.8 365 46.8
Sc17g0007100 Simmondsia chinensis HOM05D007956 ORTHO05D010152 4.2e-76 289.3 366 42.3
MSTRG.15969 Avicennia marina HOM05D007956 ORTHO05D010152 1.8e-74 283.9 369 51.2
vmacro03705 Vaccinium macrocarpon HOM05D007956 ORTHO05D010152 2.3e-74 283.5 364 54.9
Lj1P1226T19 Lonicera japonica HOM05D007956 ORTHO05D010152 6.8e-74 282.0 368 54.6
Duzib235G1205 Durio zibethinus HOM05D007956 ORTHO05D010152 2.0e-73 280.4 367 39.5
Ah.09g235260 Amaranthus hybridus HOM05D007956 ORTHO05D010152 4.1e-71 272.7 368 39.7
PGR042G2623 Punica granatum HOM05D007956 ORTHO05D010152 1.6e-70 270.8 366 40.7
Potri.004G020900 Populus trichocarpa HOM05D007956 ORTHO05D010152 3.5e-70 269.6 363 49.0
PGSC0003DMG400002071 Solanum tuberosum HOM05D007956 ORTHO05D010152 4.5e-70 269.2 366 39.9
Gorai.009G176500 Gossypium raimondii HOM05D007956 ORTHO05D010152 1.1e-68 264.6 358 38.5
Gohir.D05G171300 Gossypium hirsutum HOM05D007956 ORTHO05D010152 1.9e-68 263.8 358 38.5
Solyc02g080170.1 Solanum lycopersicum HOM05D007956 ORTHO05D010152 2.5e-68 263.5 366 38.8
Cfa000267 Carpinus fangiana HOM05D007956 ORTHO05D010152 1.2e-67 261.2 369 39.8
HanXRQChr16g0515891 Helianthus annuus HOM05D007956 ORTHO05D010152 2.8e-67 260.0 368 38.9
SGA_v2.0_scaffold114G32030 Striga asiatica HOM05D007956 ORTHO05D010152 2.8e-67 260.0 369 39.6
CAN.G569.38 Capsicum annuum HOM05D007956 ORTHO05D010152 4.7e-67 259.2 366 39.9
EL10Ac8g19997 Beta vulgaris HOM05D007956 ORTHO05D010152 3.1e-66 256.5 360 39.4
Lsat_1_v5_gn_4_59081 Lactuca sativa HOM05D007956 ORTHO05D010152 5.2e-66 255.8 368 38.0
Prupe.4G025500 Prunus persica HOM05D007956 ORTHO05D010152 2.6e-65 253.4 367 46.6
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 9.8e-65 251.5 364 53.3
Ciclev10018367m.g Citrus clementina HOM05D007956 ORTHO05D010152 1.1e-63 248.1 367 46.3
Sopen02g024890 Solanum pennellii HOM05D007956 ORTHO05D010152 5.4e-63 245.7 366 37.4
Nitab4.5_0005793g0030 Nicotiana tabacum HOM05D007956 ORTHO05D010152 7.0e-63 245.4 366 46.4
AUR62022001 Chenopodium quinoa HOM05D007956 ORTHO05D010152 2.3e-61 240.4 368 37.0
COL.COLO4_06641 Corchorus olitorius HOM05D007956 ORTHO05D010152 2.5e-60 236.9 371 36.4
MD00G1180200 Malus domestica HOM05D007956 ORTHO05D010152 3.3e-60 236.5 369 43.9
Nitab4.5_0002347g0140 Nicotiana tabacum HOM05D007956 ORTHO05D010152 5.6e-60 235.7 366 38.0
Gohir.A05G168200 Gossypium hirsutum HOM05D007956 ORTHO05D010152 1.2e-59 234.6 348 37.1
Carub.0007s2026 Capsella rubella HOM05D007956 ORTHO05D010152 2.8e-59 233.4 374 34.2
CANSAT56G1376 Cannabis sativa HOM05D007956 ORTHO05D010152 4.7e-59 232.6 368 44.6
Eucgr.E04114 Eucalyptus grandis HOM05D007956 ORTHO05D010152 6.2e-59 232.3 368 45.4
AUR62012653 Chenopodium quinoa HOM05D007956 ORTHO05D010152 1.4e-58 231.1 354 36.4
Thhalv10024760m.g Eutrema salsugineum HOM05D007956 ORTHO05D010152 2.0e-57 227.3 373 34.6
AT4G21170 Arabidopsis thaliana HOM05D007956 ORTHO05D010152 2.6e-57 226.9 373 34.0
CiPaw.09G087900 Carya illinoinensis HOM05D007956 ORTHO05D010152 5.8e-57 225.7 356 43.5
Thecc.06G215000 Theobroma cacao HOM05D007956 ORTHO05D010152 5.8e-57 225.7 368 40.2
MBI18_g39550_MAGBIO Magnolia biondii HOM05D007956 ORTHO05D010152 9.8e-57 224.9 368 35.1
Manes.16G011600 Manihot esculenta HOM05D007956 ORTHO05D010152 9.8e-57 224.9 367 49.0
BcaNung03837 Brassica carinata HOM05D007956 ORTHO05D010152 2.9e-56 223.4 376 34.3
CARHR227750 Cardamine hirsuta HOM05D007956 ORTHO05D010152 1.1e-55 221.5 374 33.2
AL7G32950 Arabidopsis lyrata HOM05D007956 ORTHO05D010152 2.4e-55 220.3 373 32.2
Atru.chr10.2152 Acer truncatum HOM05D007956 ORTHO05D010152 3.2e-55 219.9 328 39.9
A01p12520 Brassica napus HOM05D007956 ORTHO05D010152 2.7e-54 216.9 372 33.3
BraA01t01197Z Brassica rapa HOM05D007956 ORTHO05D010152 3.5e-54 216.5 373 33.5
QL05p074803 Quercus lobata HOM05D007956 ORTHO05D010152 4.6e-54 216.1 367 46.3
Sp7g19250 Schrenkiella parvula HOM05D007956 ORTHO05D010152 6.0e-54 215.7 374 33.2
BcaC09g51250 Brassica carinata HOM05D007956 ORTHO05D010152 1.1e-52 211.5 372 33.3
C01p15110 Brassica napus HOM05D007956 ORTHO05D010152 1.1e-52 211.5 372 33.3
BolC1t01460H Brassica oleracea HOM05D007956 ORTHO05D010152 1.1e-52 211.5 372 33.3
FvH4_3g02620 Fragaria vesca HOM05D007956 ORTHO05D010152 1.1e-52 211.5 367 46.3
Eucgr.L03252 Eucalyptus grandis HOM05D007956 ORTHO05D010152 4.3e-52 209.5 303 39.9
Actinidia05532 Actinidia chinensis HOM05D007956 ORTHO05D010152 7.3e-52 208.8 309 52.4
FAN25G3383 Fragaria x ananassa HOM05D007956 ORTHO05D010152 3.6e-51 206.5 367 45.5
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 4.7e-51 206.1 179 57.5
Peaxi162Scf00427g00116 Petunia axillaris HOM05D007956 ORTHO05D010152 1.1e-50 204.9 360 42.2
FAN21G4014 Fragaria x ananassa HOM05D007956 ORTHO05D010152 3.1e-50 203.4 367 45.2
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 3.4e-49 199.9 309 51.1
RcHm_v2.0_Chr5g0003911 Rosa chinensis HOM05D007956 ORTHO05D010152 4.6e-46 189.5 177 50.8
Eucgr.E04115 Eucalyptus grandis HOM05D007956 ORTHO05D010152 6.6e-45 185.7 331 42.9
THA.LOC104812478 Tarenaya hassleriana HOM05D007956 ORTHO05D010152 2.5e-44 183.7 370 34.9
Haze_06747 Corylus avellana HOM05D007956 ORTHO05D010152 4.7e-43 179.5 156 53.2
ATR0697G148 Amborella trichopoda HOM05D007956 ORTHO05D010152 1.5e-36 157.9 361 37.1
Aa31LG6G3180 Aethionema arabicum HOM05D007956 ORTHO05D010152 2.5e-36 157.1 369 40.7
ATR0751G204 Amborella trichopoda HOM05D007956 ORTHO05D010152 2.1e-30 137.5 265 41.9
Aqoxy1G03672 Aquilegia oxysepala HOM05D007956 ORTHO05D010152 4.6e-30 136.3 368 37.5
QL05p074780 Quercus lobata HOM05D000013 ORTHO05D000011 2.4e-23 114.0 200 34.0
CDE05G3624 Ceratophyllum demersum HOM05D007956 ORTHO05D010152 6.2e-19 99.4 140 38.6
HPP92_010087 Vanilla planifolia HOM05D007956 ORTHO05D010152 5.6e-12 76.3 138 29.7
Haze_06748 Corylus avellana HOM05D007956 ORTHO05D010152 4.8e-11 73.2 219 46.6
Ca_01194_v3 Cicer arietinum L. HOM05D006218 ORTHO05D007338 6.9e-10 69.3 162 26.5
TAR624G0359 Trochodendron aralioides HOM05D007956 ORTHO05D010152 2.6e-09 67.4 76 44.7
Aqoxy7G02438 Aquilegia oxysepala HOM05D058852 ORTHO05D026715 1.7e-08 64.7 143 31.5
Medtr2g100200 Medicago truncatula HOM05D006218 ORTHO05D007338 4.9e-08 63.2 161 26.7
Zm00001eb191870 Zea mays HOM05D011046 ORTHO05D013342 4.9e-08 63.2 327 21.1
SEGI_29272 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 1.1e-07 62.0 175 22.3
SalBow6G0752 Salvia bowleyana HOM05D006218 ORTHO05D007338 1.4e-07 61.6 159 28.9
AL1G29000 Arabidopsis lyrata HOM05D007552 ORTHO05D009397 4.2e-07 60.1 209 24.9
MSTRG.18528 Avicennia marina HOM05D007173 ORTHO05D009151 7.1e-07 59.3 169 26.6
Rhsim10G0062900 Rhododendron simsii HOM05D006218 ORTHO05D007338 7.1e-07 59.3 224 19.6
Lsat_1_v5_gn_2_69281 Lactuca sativa HOM05D006218 ORTHO05D007338 2.7e-06 57.4 321 19.9
CARHR017300 Cardamine hirsuta HOM05D007552 ORTHO05D009397 7.9e-06 55.8 220 21.8


User provided reference genes

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