Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 5.1e-70 267.7 141 100.0
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 4.6e-31 138.3 139 62.6
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 1.3e-30 136.7 144 57.6
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 1.3e-28 130.2 148 53.4
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.1e-27 127.1 141 55.3
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 5.3e-27 124.8 145 53.1
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 1.5e-26 123.2 141 58.2
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 3.4e-26 122.1 147 49.7
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 4.5e-26 121.7 130 57.7
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 1.7e-25 119.8 132 59.8
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 5.5e-24 114.8 151 52.3
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 5.5e-24 114.8 140 53.6
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 1.6e-23 113.2 147 48.3
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 1.6e-23 113.2 137 53.3
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 6.1e-23 111.3 143 50.3
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 1.0e-22 110.5 140 52.1
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 1.0e-22 110.5 146 54.1
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 1.4e-22 110.2 141 50.4
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.4e-22 110.2 142 50.7
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.8e-22 109.8 145 49.7
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 2.3e-22 109.4 148 48.6
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.3e-22 109.4 144 52.1
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 2.3e-22 109.4 135 54.1
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 3.0e-22 109.0 138 52.2
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 5.1e-22 108.2 142 50.0
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 6.7e-22 107.8 142 50.0
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 6.7e-22 107.8 145 52.4
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 8.8e-22 107.5 143 52.4
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 1.1e-21 107.1 135 52.6
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 1.1e-21 107.1 149 51.7
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 1.5e-21 106.7 135 53.3
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 2.0e-21 106.3 137 50.4
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 2.6e-21 105.9 135 50.4
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 4.4e-21 105.1 135 51.9
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 7.4e-21 104.4 140 48.6
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 7.4e-21 104.4 138 49.3
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 9.7e-21 104.0 139 50.4
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.7e-20 103.2 138 50.0
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.2e-20 102.8 142 49.3
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.2e-20 102.8 144 47.9
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 2.8e-20 102.4 147 49.0
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.7e-20 102.1 143 48.3
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 3.7e-20 102.1 138 48.6
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 3.7e-20 102.1 149 49.0
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 6.3e-20 101.3 149 48.3
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 8.2e-20 100.9 132 51.5
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 8.2e-20 100.9 139 51.8
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.4e-19 100.1 144 43.1
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 1.8e-19 99.8 141 44.0
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 5.3e-19 98.2 137 46.0
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 5.3e-19 98.2 141 48.2
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 1.2e-18 97.1 141 48.9
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 1.5e-18 96.7 136 50.0
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 1.5e-18 96.7 142 49.3
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 1.5e-18 96.7 141 46.1
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 4.5e-18 95.1 135 45.9
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 5.9e-18 94.7 139 46.0
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 5.9e-18 94.7 139 46.0
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 5.9e-18 94.7 145 47.6
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 1.0e-17 94.0 130 51.5
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 1.3e-17 93.6 140 47.1
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 1.7e-17 93.2 140 43.6
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 1.7e-17 93.2 144 50.0
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 2.9e-17 92.4 153 45.1
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 3.8e-17 92.0 141 44.7
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 1.1e-16 90.5 120 52.5
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.1e-16 90.5 144 46.5
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.4e-16 90.1 148 45.3
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 2.5e-16 89.4 138 47.8
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.5e-16 89.4 119 52.1
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 7.2e-16 87.8 132 49.2
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 7.2e-16 87.8 140 43.6
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 7.2e-16 87.8 140 43.6
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.2e-15 87.0 138 44.2
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 2.1e-15 86.3 136 45.6
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 3.6e-15 85.5 146 47.9
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 3.6e-15 85.5 136 46.3
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 3.6e-15 85.5 136 46.3
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 3.6e-15 85.5 134 46.3
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 4.7e-15 85.1 99 55.6
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 4.7e-15 85.1 142 45.1
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 7.9e-15 84.3 145 43.4
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.4e-14 83.6 117 54.7
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 1.8e-14 83.2 134 44.8
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 3.9e-14 82.0 135 45.2
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 5.2e-14 81.6 144 46.5
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 2.0e-13 79.7 147 45.6
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 2.0e-13 79.7 136 43.4
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 2.0e-13 79.7 139 43.2
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 2.6e-13 79.3 141 44.7
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 3.3e-13 79.0 134 45.5
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 4.4e-13 78.6 119 50.4
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 7.4e-13 77.8 137 44.5
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 9.7e-13 77.4 138 48.6
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.3e-12 77.0 133 43.6
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.7e-12 76.6 135 46.7
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 2.8e-12 75.9 145 45.5
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 3.7e-12 75.5 137 44.5
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 4.8e-12 75.1 152 42.8
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 1.1e-11 73.9 143 41.3
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.4e-11 73.6 144 43.1
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 1.8e-11 73.2 135 41.5
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 2.4e-11 72.8 155 43.9
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 2.4e-11 72.8 143 37.8
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 5.3e-11 71.6 150 42.0
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 5.3e-11 71.6 155 41.9
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 5.3e-11 71.6 138 42.8
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 7.0e-11 71.2 149 42.3
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 1.2e-10 70.5 150 41.3
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 2.6e-10 69.3 135 39.3
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 4.5e-10 68.6 60 58.3
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 5.9e-10 68.2 130 43.1
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 5.9e-10 68.2 143 44.8
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 1.7e-09 66.6 138 36.2
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 1.7e-09 66.6 154 40.3
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 2.2e-09 66.2 160 41.9
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 2.2e-09 66.2 136 40.4
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 3.8e-09 65.5 156 41.7
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 6.5e-09 64.7 151 39.7
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 6.5e-09 64.7 144 38.2
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 8.5e-09 64.3 156 41.7
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 8.5e-09 64.3 144 38.2
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 8.5e-09 64.3 150 39.3
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 8.5e-09 64.3 156 41.7
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 8.5e-09 64.3 144 38.2
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 1.1e-08 63.9 144 38.2
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 1.5e-08 63.5 140 38.6
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 1.5e-08 63.5 149 38.9
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 1.9e-08 63.2 144 42.4
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 3.2e-08 62.4 141 37.6
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 4.2e-08 62.0 150 40.0
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 4.2e-08 62.0 150 38.0
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 4.2e-08 62.0 150 40.0
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 4.2e-08 62.0 144 41.0
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 7.2e-08 61.2 150 38.0
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 9.4e-08 60.8 131 41.2
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.2e-07 60.5 88 45.5
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 2.1e-07 59.7 46 63.0
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 2.1e-07 59.7 96 39.6
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 2.7e-07 59.3 132 40.2
HPP92_001786 Vanilla planifolia HOM05D033938 ORTHO05D004706 2.7e-07 59.3 64 56.2
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 4.7e-07 58.5 150 32.7
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.0e-06 57.4 141 36.2
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.4e-06 57.0 65 50.8
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 1.8e-06 56.6 124 45.2
CDE05G3057 Ceratophyllum demersum HOM05D067338 ORTHO05D004706 3.0e-06 55.8 136 33.8
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 6.7e-06 54.7 141 32.6
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 6.7e-06 54.7 138 37.0


User provided reference genes

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