Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 6.5e-45 183.7 95 100.0
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 4.8e-32 141.0 95 73.7
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 6.3e-32 140.6 95 77.9
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 5.7e-25 117.5 100 58.0
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 1.7e-24 115.9 95 62.1
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 7.7e-22 107.1 95 56.8
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 7.7e-22 107.1 95 56.8
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 6.5e-21 104.0 59 71.2
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.1e-20 103.2 83 65.1
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 3.2e-20 101.7 97 55.7
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 7.2e-20 100.5 95 53.7
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.6e-19 99.4 97 53.6
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.7e-19 98.6 94 52.1
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 4.7e-19 97.8 97 50.5
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 8.0e-19 97.1 83 57.8
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.0e-18 96.7 83 57.8
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 1.4e-18 96.3 92 51.1
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.4e-18 96.3 83 59.0
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 1.8e-18 95.9 83 54.2
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 5.2e-18 94.4 96 49.0
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 6.8e-18 94.0 94 50.0
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.2e-17 93.2 95 52.6
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.6e-17 92.0 96 47.9
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 2.6e-17 92.0 96 47.9
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.4e-17 91.7 93 50.5
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.4e-17 91.7 94 50.0
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 4.4e-17 91.3 82 47.6
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 7.5e-17 90.5 95 50.5
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 7.5e-17 90.5 93 51.6
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 7.5e-17 90.5 95 53.7
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 9.8e-17 90.1 94 54.3
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 1.3e-16 89.7 98 52.0
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 2.2e-16 89.0 95 50.5
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 2.8e-16 88.6 95 50.5
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 2.8e-16 88.6 94 44.7
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 2.8e-16 88.6 96 47.9
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 3.7e-16 88.2 71 57.7
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.7e-16 88.2 93 48.4
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.7e-16 88.2 98 49.0
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 4.8e-16 87.8 99 47.5
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 4.8e-16 87.8 94 48.9
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 6.3e-16 87.4 83 56.6
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.4e-15 86.3 87 49.4
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.4e-15 86.3 87 49.4
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.4e-15 86.3 93 49.5
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 1.8e-15 85.9 95 47.4
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 1.8e-15 85.9 94 45.7
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 2.4e-15 85.5 95 47.4
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 3.1e-15 85.1 94 50.0
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 3.1e-15 85.1 95 48.4
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 4.1e-15 84.7 104 44.2
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 4.1e-15 84.7 97 48.5
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.1e-15 84.7 94 50.0
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 4.1e-15 84.7 88 47.7
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 5.4e-15 84.3 95 46.3
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 7.0e-15 84.0 91 49.5
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 9.1e-15 83.6 80 50.0
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.2e-14 83.2 92 45.7
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-14 83.2 59 55.9
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 1.2e-14 83.2 97 49.5
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 1.2e-14 83.2 98 46.9
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 1.2e-14 83.2 95 41.1
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.6e-14 82.8 98 49.0
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 2.0e-14 82.4 94 45.7
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-14 82.4 96 47.9
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 2.0e-14 82.4 98 49.0
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 2.0e-14 82.4 94 41.5
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 2.0e-14 82.4 94 41.5
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 2.7e-14 82.0 89 44.9
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 2.7e-14 82.0 96 44.8
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 2.7e-14 82.0 96 51.0
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 2.7e-14 82.0 96 51.0
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-14 81.6 92 47.8
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-14 81.6 92 47.8
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.5e-14 81.6 94 47.9
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.5e-14 81.6 94 47.9
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 3.5e-14 81.6 85 51.8
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 4.5e-14 81.3 94 47.9
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 5.9e-14 80.9 71 47.9
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.9e-14 80.9 93 48.4
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 5.9e-14 80.9 54 59.3
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 7.7e-14 80.5 84 44.0
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 7.7e-14 80.5 84 44.0
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 7.7e-14 80.5 95 47.4
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.7e-14 80.5 93 49.5
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 7.7e-14 80.5 95 46.3
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 1.0e-13 80.1 84 48.8
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.0e-13 80.1 84 48.8
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.0e-13 80.1 84 48.8
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.0e-13 80.1 49 61.2
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 1.0e-13 80.1 96 50.0
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.3e-13 79.7 98 48.0
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 1.3e-13 79.7 98 50.0
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 2.3e-13 79.0 81 40.7
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 2.3e-13 79.0 96 50.0
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 2.9e-13 78.6 97 43.3
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 3.8e-13 78.2 94 43.6
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 3.8e-13 78.2 86 44.2
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 5.0e-13 77.8 95 47.4
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 5.0e-13 77.8 94 47.9
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 5.0e-13 77.8 84 46.4
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 6.5e-13 77.4 95 46.3
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 6.5e-13 77.4 91 46.2
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.5e-13 77.4 90 47.8
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.5e-13 77.4 92 45.7
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 8.6e-13 77.0 58 53.4
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 8.6e-13 77.0 58 53.4
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 8.6e-13 77.0 92 42.4
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 1.1e-12 76.6 87 52.9
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 1.5e-12 76.3 72 43.1
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.5e-12 76.3 96 43.8
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 1.5e-12 76.3 92 44.6
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.9e-12 75.9 92 45.7
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 1.9e-12 75.9 94 46.8
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.5e-12 75.5 94 39.4
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 3.2e-12 75.1 59 57.6
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 3.2e-12 75.1 84 51.2
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 3.2e-12 75.1 84 50.0
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 4.2e-12 74.7 92 45.7
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 4.2e-12 74.7 92 41.3
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.2e-12 74.7 94 38.3
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.2e-12 74.7 95 43.2
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 4.2e-12 74.7 97 43.3
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 4.2e-12 74.7 87 51.7
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 4.2e-12 74.7 92 46.7
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.5e-12 74.3 84 46.4
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.2e-12 73.9 91 42.9
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 7.2e-12 73.9 92 44.6
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 7.2e-12 73.9 95 45.3
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 9.5e-12 73.6 56 57.1
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 9.5e-12 73.6 92 41.3
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.2e-11 73.2 92 45.7
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 1.2e-11 73.2 86 47.7
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 1.2e-11 73.2 78 43.6
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 1.6e-11 72.8 57 54.4
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 1.6e-11 72.8 57 54.4
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.1e-11 72.4 54 57.4
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 2.1e-11 72.4 93 43.0
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.1e-11 72.4 78 44.9
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 2.1e-11 72.4 67 49.3
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 2.8e-11 72.0 51 56.9
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 3.6e-11 71.6 83 41.0
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 4.7e-11 71.2 79 51.9
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 6.1e-11 70.9 86 46.5
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 6.1e-11 70.9 93 48.4
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 8.0e-11 70.5 84 46.4
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 8.0e-11 70.5 86 46.5
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 1.0e-10 70.1 96 41.7
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.0e-10 70.1 91 46.2
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 1.0e-10 70.1 60 55.0
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 1.4e-10 69.7 92 44.6
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 1.4e-10 69.7 52 55.8
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.4e-10 69.7 55 58.2
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 1.4e-10 69.7 93 37.6
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.8e-10 69.3 90 36.7
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.3e-10 68.9 51 47.1
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 2.3e-10 68.9 93 36.6
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 3.0e-10 68.6 92 43.5
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.0e-10 68.6 94 39.4
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 3.0e-10 68.6 58 50.0
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 4.0e-10 68.2 63 52.4
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 5.2e-10 67.8 95 41.1
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 6.8e-10 67.4 97 42.3
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 8.8e-10 67.0 54 51.9
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.0e-09 65.9 49 49.0
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 2.6e-09 65.5 94 40.4
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.7e-08 62.8 93 43.0
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.7e-08 62.8 71 43.7
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 2.2e-08 62.4 93 40.9
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.8e-08 62.0 82 39.0
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 3.7e-08 61.6 46 56.5
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.9e-08 61.2 82 39.0
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 8.3e-08 60.5 62 38.7
FvH4_5g02870 Fragaria vesca HOM05D003712 ORTHO05D004368 8.3e-08 60.5 95 44.2
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.3e-08 60.5 93 40.9
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 1.8e-07 59.3 92 39.1
Nitab4.5_0005244g0100 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.4e-07 57.8 66 47.0
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 5.4e-07 57.8 82 42.7
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 1.6e-06 56.2 91 29.7
MBI18_g37563_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.6e-06 56.2 48 47.9
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 4.5e-06 54.7 54 50.0


User provided reference genes

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