Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008033 Daucus carota HOM05D000668 ORTHO05D035011 1.7e-54 215.7 104 100.0
DCAR_004066 Daucus carota HOM05D000668 ORTHO05D035011 5.8e-23 110.9 102 55.9
Hma1.2p1_0736F.1_g210720 Hydrangea macrophylla HOM05D000668 ORTHO05D035011 3.0e-11 72.0 59 54.2
Hma1.2p1_0736F.1_g210730 Hydrangea macrophylla HOM05D000668 ORTHO05D000516 3.0e-11 72.0 97 39.2
Cc02_g13520 Coffea canephora HOM05D000668 ORTHO05D000516 2.0e-10 69.3 93 38.7
MBI06_g23080_MAGBIO Magnolia biondii HOM05D000668 ORTHO05D000516 2.0e-10 69.3 90 36.7
Actinidia05645 Actinidia chinensis HOM05D000668 ORTHO05D000516 2.5e-10 68.9 99 38.4
BraA09t36178Z Brassica rapa HOM05D000668 ORTHO05D000516 2.5e-10 68.9 97 40.2
CDE10G0178 Ceratophyllum demersum HOM05D000668 ORTHO05D000516 2.5e-10 68.9 97 36.1
CDE10G1111 Ceratophyllum demersum HOM05D000962 ORTHO05D000752 2.5e-10 68.9 97 36.1
MBI06_g20685_MAGBIO Magnolia biondii HOM05D000668 ORTHO05D000516 4.3e-10 68.2 58 48.3
Sc22g0002060 Simmondsia chinensis HOM05D000668 ORTHO05D000516 4.3e-10 68.2 96 39.6
BcaC04g23641 Brassica carinata HOM05D000668 ORTHO05D000516 5.7e-10 67.8 97 39.2
A09p05400 Brassica napus HOM05D000668 ORTHO05D000516 5.7e-10 67.8 97 39.2
C09p05880 Brassica napus HOM05D000668 ORTHO05D000516 5.7e-10 67.8 97 39.2
BolC9t53514H Brassica oleracea HOM05D000668 ORTHO05D000516 5.7e-10 67.8 97 39.2
CSS0015175 Camellia sinensis var. sinensis HOM05D000668 ORTHO05D000516 5.7e-10 67.8 96 33.3
AL6G39280 Arabidopsis lyrata HOM05D000668 ORTHO05D000516 7.4e-10 67.4 64 51.6
Carub.0006s2487 Capsella rubella HOM05D000668 ORTHO05D000516 9.7e-10 67.0 101 38.6
Sp3g04320 Schrenkiella parvula HOM05D000668 ORTHO05D000516 9.7e-10 67.0 98 38.8
CARHR079880 Cardamine hirsuta HOM05D000668 ORTHO05D000516 1.3e-09 66.6 98 38.8
Peaxi162Scf00037g00921 Petunia axillaris HOM05D000668 ORTHO05D000516 1.3e-09 66.6 100 39.0
BcaB04g19264 Brassica carinata HOM05D000668 ORTHO05D000516 1.7e-09 66.2 101 35.6
BcaB04g19263 Brassica carinata HOM05D000668 ORTHO05D000516 2.2e-09 65.9 98 36.7
C03p41540 Brassica napus HOM05D000668 ORTHO05D000516 2.2e-09 65.9 98 36.7
QL11p018315 Quercus lobata HOM05D000668 ORTHO05D000516 2.2e-09 65.9 102 36.3
Nitab4.5_0008329g0040 Nicotiana tabacum HOM05D000668 ORTHO05D000516 2.8e-09 65.5 96 37.5
BcaC09g47828 Brassica carinata HOM05D000668 ORTHO05D000516 3.7e-09 65.1 101 35.6
BNapus_Darmor_BZH_scaffold_114p00060 Brassica napus HOM05D000668 ORTHO05D000516 3.7e-09 65.1 101 34.7
BolC1t05693H Brassica oleracea HOM05D000668 ORTHO05D000516 3.7e-09 65.1 101 35.6
BraSC132t45502Z Brassica rapa HOM05D000668 ORTHO05D000516 3.7e-09 65.1 101 34.7
CSS0014221 Camellia sinensis var. sinensis HOM05D000668 ORTHO05D000516 3.7e-09 65.1 101 34.7
Dinv40573 Davidia involucrata HOM05D000668 ORTHO05D000516 3.7e-09 65.1 105 39.0
TAR627G0254 Trochodendron aralioides HOM05D000668 ORTHO05D000516 3.7e-09 65.1 60 43.3
TAR627G1157 Trochodendron aralioides HOM05D000668 ORTHO05D000516 3.7e-09 65.1 60 43.3
BolC3t16435H Brassica oleracea HOM05D000668 ORTHO05D000516 4.8e-09 64.7 98 35.7
Dinv38165 Davidia involucrata HOM05D000668 ORTHO05D000516 4.8e-09 64.7 95 33.7
TAR624G0049 Trochodendron aralioides HOM05D000668 ORTHO05D000516 4.8e-09 64.7 102 33.3
A03p34150 Brassica napus HOM05D000668 ORTHO05D000516 6.3e-09 64.3 96 40.6
BraA03t12589Z Brassica rapa HOM05D000668 ORTHO05D000516 6.3e-09 64.3 96 40.6
Nitab4.5_0002344g0010 Nicotiana tabacum HOM05D000668 ORTHO05D000516 6.3e-09 64.3 96 37.5
Sc15g0002640 Simmondsia chinensis HOM05D000668 ORTHO05D000516 6.3e-09 64.3 60 45.0
TAR626G1460 Trochodendron aralioides HOM05D000668 ORTHO05D000516 6.3e-09 64.3 58 46.6
Aa31LG5G15910 Aethionema arabicum HOM05D000668 ORTHO05D000516 8.2e-09 63.9 97 37.1
BcaC05g30163 Brassica carinata HOM05D000668 ORTHO05D000516 8.2e-09 63.9 101 36.6
CSS0021052 Camellia sinensis var. sinensis HOM05D000668 ORTHO05D000516 8.2e-09 63.9 56 46.4
Medtr3g084350 Medicago truncatula HOM05D000668 ORTHO05D000516 8.2e-09 63.9 58 41.4
THA.LOC104818714 Tarenaya hassleriana HOM05D000668 ORTHO05D000516 8.2e-09 63.9 61 49.2
THA.LOC104821723 Tarenaya hassleriana HOM05D000668 ORTHO05D000516 8.2e-09 63.9 61 47.5
Aa31LG11G9450 Aethionema arabicum HOM05D000668 ORTHO05D000516 1.1e-08 63.5 102 37.3
Thhalv10021783m.g Eutrema salsugineum HOM05D000668 ORTHO05D000516 1.1e-08 63.5 101 37.6
Sabra17G0053100 Salix brachista HOM05D000668 ORTHO05D000516 1.1e-08 63.5 102 37.3
BcaC05g30117 Brassica carinata HOM05D000668 ORTHO05D000516 1.8e-08 62.8 101 36.6
C05p61740 Brassica napus HOM05D000668 ORTHO05D000516 1.8e-08 62.8 101 36.6
BolC5t34832H Brassica oleracea HOM05D000668 ORTHO05D000516 1.8e-08 62.8 101 36.6
Prupe.4G049000 Prunus persica HOM05D000668 ORTHO05D000516 1.8e-08 62.8 103 32.0
QL05p041191 Quercus lobata HOM05D000668 ORTHO05D000516 1.8e-08 62.8 102 32.4
BraA05t19071Z Brassica rapa HOM05D000668 ORTHO05D000516 2.4e-08 62.4 101 36.6
CAN.G185.13 Capsicum annuum HOM05D000668 ORTHO05D000516 3.1e-08 62.0 95 31.6
Potri.001G320700 Populus trichocarpa HOM05D000668 ORTHO05D000516 3.1e-08 62.0 101 38.6
THA.LOC104802797 Tarenaya hassleriana HOM05D000668 ORTHO05D000516 3.1e-08 62.0 97 37.1
CSS0034135 Camellia sinensis var. sinensis HOM05D000668 ORTHO05D000516 4.1e-08 61.6 100 30.0
CANSAT54G2300 Cannabis sativa HOM05D000668 ORTHO05D000516 4.1e-08 61.6 96 36.5
Dinv17323 Davidia involucrata HOM05D000668 ORTHO05D000516 4.1e-08 61.6 97 35.1
AL3G16090 Arabidopsis lyrata HOM05D000668 ORTHO05D000516 5.3e-08 61.2 101 36.6
AUR62040735 Chenopodium quinoa HOM05D000668 ORTHO05D000516 5.3e-08 61.2 89 36.0
Sc16g0008620 Simmondsia chinensis HOM05D000668 ORTHO05D000516 5.3e-08 61.2 56 46.4
Carub.0003s0478 Capsella rubella HOM05D000668 ORTHO05D000516 6.9e-08 60.8 102 36.3
FAN16G0140 Fragaria x ananassa HOM05D000668 ORTHO05D000516 6.9e-08 60.8 102 36.3
Solyc01g067900.3 Solanum lycopersicum HOM05D000668 ORTHO05D000516 6.9e-08 60.8 87 35.6
CAN.G665.20 Capsicum annuum HOM05D000668 ORTHO05D000516 9.1e-08 60.5 56 50.0
Duzib132G0963 Durio zibethinus HOM05D000668 ORTHO05D000516 9.1e-08 60.5 96 33.3
Solyc01g099520.3 Solanum lycopersicum HOM05D000668 ORTHO05D000516 9.1e-08 60.5 96 35.4
Sopen01g043030 Solanum pennellii HOM05D000668 ORTHO05D000516 9.1e-08 60.5 96 35.4
Duzib248G0509 Durio zibethinus HOM05D000668 ORTHO05D000516 1.2e-07 60.1 98 31.6
ATR0605G076 Amborella trichopoda HOM05D000668 ORTHO05D000516 1.5e-07 59.7 106 33.0
FAN22G0036 Fragaria x ananassa HOM05D000825 ORTHO05D002486 1.5e-07 59.7 93 36.6
Duzib052G0337 Durio zibethinus HOM05D000668 ORTHO05D000516 2.0e-07 59.3 100 34.0
FvH4_3g09020 Fragaria vesca HOM05D000668 ORTHO05D000516 2.0e-07 59.3 101 32.7
FvH4_4g13250 Fragaria vesca HOM05D000668 ORTHO05D000516 2.0e-07 59.3 93 35.5
FAN17G2729 Fragaria x ananassa HOM05D000668 ORTHO05D000516 2.0e-07 59.3 93 35.5
Peaxi162Scf00071g00616 Petunia axillaris HOM05D000668 ORTHO05D000516 2.0e-07 59.3 55 43.6
AT3G05490 Arabidopsis thaliana HOM05D000668 ORTHO05D000516 2.6e-07 58.9 98 33.7
FAN07G1440 Fragaria x ananassa HOM05D000668 ORTHO05D000516 2.6e-07 58.9 93 35.5
Lalb_Chr08g0230471 Lupinus albus HOM05D000668 ORTHO05D000516 2.6e-07 58.9 99 36.4
MD13G1281800 Malus domestica HOM05D000668 ORTHO05D000516 2.6e-07 58.9 93 33.3
Solyc12g013895.1 Solanum lycopersicum HOM05D000668 ORTHO05D000516 2.6e-07 58.9 99 34.3
Sopen01g029860 Solanum pennellii HOM05D000668 ORTHO05D000516 2.6e-07 58.9 58 43.1
Haze_06428 Corylus avellana HOM05D000668 ORTHO05D000516 3.4e-07 58.5 97 35.1
FAN11G3682 Fragaria x ananassa HOM05D000668 ORTHO05D000516 3.4e-07 58.5 54 44.4
FAN12G2803 Fragaria x ananassa HOM05D000668 ORTHO05D000516 3.4e-07 58.5 93 35.5
Prupe.1G165400 Prunus persica HOM05D000668 ORTHO05D000516 3.4e-07 58.5 93 32.3
SEGI_33666 Sequoiadendron giganteum HOM05D000668 ORTHO05D000516 3.4e-07 58.5 95 40.0
Sopen12g007220 Solanum pennellii HOM05D000668 ORTHO05D000516 3.4e-07 58.5 99 34.3
PGSC0003DMG400024749 Solanum tuberosum HOM05D000668 ORTHO05D000516 3.4e-07 58.5 96 34.4
Aqoxy1G02379 Aquilegia oxysepala HOM05D000668 ORTHO05D000516 4.5e-07 58.2 70 38.6
FAN21G0697 Fragaria x ananassa HOM05D000668 ORTHO05D000516 4.5e-07 58.2 101 31.7
BraA05t23036Z Brassica rapa HOM05D000668 ORTHO05D000516 5.9e-07 57.8 101 35.6
TWI12G0335 Tripterygium wilfordii HOM05D000668 ORTHO05D000516 5.9e-07 57.8 95 36.8
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 7.7e-07 57.4 60 43.3
Sc16g0008630 Simmondsia chinensis HOM05D000668 ORTHO05D000516 7.7e-07 57.4 55 43.6
MD10G1292900 Malus domestica HOM05D000668 ORTHO05D000516 1.0e-06 57.0 97 34.0
Nn3g20711 Nelumbo nucifera HOM05D000668 ORTHO05D000516 1.0e-06 57.0 101 32.7
Oeu002929.1 Olea europaea HOM05D000668 ORTHO05D000516 1.0e-06 57.0 58 39.7
Oeu043435.1 Olea europaea HOM05D000668 ORTHO05D000516 1.0e-06 57.0 57 42.1
AUR62018549 Chenopodium quinoa HOM05D000668 ORTHO05D000516 1.3e-06 56.6 57 42.1
AUR62020870 Chenopodium quinoa HOM05D000668 ORTHO05D000516 1.3e-06 56.6 57 42.1
MBI07_g08882_MAGBIO Magnolia biondii HOM05D000668 ORTHO05D000516 1.3e-06 56.6 51 47.1
Potri.017G059500 Populus trichocarpa HOM05D000668 ORTHO05D000516 1.3e-06 56.6 97 34.0
Aa31LG1G9660 Aethionema arabicum HOM05D000668 ORTHO05D000516 1.7e-06 56.2 97 34.0
Migut.N00422 Erythranthe guttata HOM05D000668 ORTHO05D000516 1.7e-06 56.2 61 42.6
SalBow7G1520 Salvia bowleyana HOM05D000668 ORTHO05D000516 1.7e-06 56.2 62 40.3
arahy.Tifrunner.gnm1.ann1.5C4XQ1 Arachis hypogaea HOM05D000668 ORTHO05D000516 2.2e-06 55.8 86 38.4
Eucgr.B01916 Eucalyptus grandis HOM05D000668 ORTHO05D000516 2.2e-06 55.8 97 32.0
HanXRQChr01g0022141 Helianthus annuus HOM05D000668 ORTHO05D000516 2.2e-06 55.8 55 41.8
MBI07_g30202_MAGBIO Magnolia biondii HOM05D000668 ORTHO05D000516 2.2e-06 55.8 102 30.4
CiPaw.10G050000 Carya illinoinensis HOM05D000668 ORTHO05D000516 2.9e-06 55.5 103 33.0
Dinv27197 Davidia involucrata HOM05D007512 ORTHO05D009524 2.9e-06 55.5 94 34.0
Nitab4.5_0008171g0030 Nicotiana tabacum HOM05D000668 ORTHO05D000516 2.9e-06 55.5 70 40.0
ATR0807G002 Amborella trichopoda HOM05D000668 ORTHO05D000516 3.8e-06 55.1 104 30.8
BcaB03g13941 Brassica carinata HOM05D000668 ORTHO05D000516 3.8e-06 55.1 98 34.7
CARHR027760 Cardamine hirsuta HOM05D000668 ORTHO05D000516 3.8e-06 55.1 98 34.7
Cfa000487 Carpinus fangiana HOM05D000668 ORTHO05D000516 3.8e-06 55.1 102 31.4
Migut.N02079 Erythranthe guttata HOM05D000668 ORTHO05D000516 3.8e-06 55.1 98 28.6
Migut.O00419 Erythranthe guttata HOM05D000668 ORTHO05D000516 3.8e-06 55.1 98 28.6
Manes.03G143800 Manihot esculenta HOM05D000668 ORTHO05D000516 3.8e-06 55.1 93 32.3
RcHm_v2.0_Chr5g0008671 Rosa chinensis HOM05D000668 ORTHO05D000516 3.8e-06 55.1 103 33.0
SEGI_31511 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 3.8e-06 55.1 96 30.2
Ah.04g161110 Amaranthus hybridus HOM05D000668 ORTHO05D000516 5.0e-06 54.7 99 28.3
Ah.06g189760 Amaranthus hybridus HOM05D000668 ORTHO05D000516 5.0e-06 54.7 56 41.1
AL1G41820 Arabidopsis lyrata HOM05D000668 ORTHO05D000516 5.0e-06 54.7 98 34.7
AT1G28270 Arabidopsis thaliana HOM05D000668 ORTHO05D000516 5.0e-06 54.7 98 34.7
CSS0039658 Camellia sinensis var. sinensis HOM05D000668 ORTHO05D000516 5.0e-06 54.7 62 40.3
Lsat_1_v5_gn_1_70801 Lactuca sativa HOM05D000668 ORTHO05D000516 5.0e-06 54.7 93 35.5
QL10p053329 Quercus lobata HOM05D000668 ORTHO05D000516 5.0e-06 54.7 95 31.6
PGSC0003DMG400015363 Solanum tuberosum HOM05D000668 ORTHO05D000516 5.0e-06 54.7 99 32.3
A07p11380 Brassica napus HOM05D000668 ORTHO05D000516 6.5e-06 54.3 98 33.7
BraA07t28926Z Brassica rapa HOM05D000668 ORTHO05D000516 6.5e-06 54.3 98 33.7
ECA240G1238 Erigeron canadensis HOM05D000668 ORTHO05D000516 6.5e-06 54.3 67 37.3
Lsat_1_v5_gn_5_53261 Lactuca sativa HOM05D000668 ORTHO05D000516 6.5e-06 54.3 102 33.3
Oeu043356.1 Olea europaea HOM05D000668 ORTHO05D000516 6.5e-06 54.3 57 40.4
PSO832G2762 Papaver somniferum HOM05D000668 ORTHO05D000516 6.5e-06 54.3 61 37.7
Psat7g114440 Pisum sativum HOM05D000668 ORTHO05D000516 6.5e-06 54.3 54 40.7
Psat7g114480 Pisum sativum HOM05D000668 ORTHO05D000516 6.5e-06 54.3 54 40.7
Sabra16G0203200 Salix brachista HOM05D000668 ORTHO05D000516 6.5e-06 54.3 102 32.4
vmacro00435 Vaccinium macrocarpon HOM05D000668 ORTHO05D000516 6.5e-06 54.3 98 30.6
Hma1.2p1_0349F.1_g132070 Hydrangea macrophylla HOM05D000668 ORTHO05D000516 8.5e-06 53.9 56 37.5
MD00G1116200 Malus domestica HOM05D000668 ORTHO05D000516 8.5e-06 53.9 104 30.8
PSO732G0053 Papaver somniferum HOM05D000668 ORTHO05D000516 8.5e-06 53.9 101 30.7
RcHm_v2.0_Chr5g0008651 Rosa chinensis HOM05D000668 ORTHO05D000516 8.5e-06 53.9 102 35.3


User provided reference genes

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