Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007994 Daucus carota HOM05D007503 ORTHO05D009487 2.9e-35 151.4 78 100.0
DCAR_023852 Daucus carota HOM05D007503 ORTHO05D009487 1.3e-30 136.0 76 92.1
Actinidia06811 Actinidia chinensis HOM05D007503 ORTHO05D009487 3.7e-22 107.8 68 76.5
GSVIVG01010020001 Vitis vinifera HOM05D007503 ORTHO05D009487 6.3e-22 107.1 69 78.3
Manes.01G240301 Manihot esculenta HOM05D007503 ORTHO05D009487 1.8e-21 105.5 68 73.5
Hma1.2p1_0123F.1_g057900 Hydrangea macrophylla HOM05D007503 ORTHO05D009487 3.1e-21 104.8 72 72.2
Dinv06977 Davidia involucrata HOM05D007503 ORTHO05D009487 5.4e-21 104.0 65 76.9
Rhsim01G0105600 Rhododendron simsii HOM05D007503 ORTHO05D009487 1.6e-20 102.4 65 76.9
vmacro20740 Vaccinium macrocarpon HOM05D007503 ORTHO05D009487 2.0e-20 102.1 65 78.5
HanXRQChr02g0039651 Helianthus annuus HOM05D007503 ORTHO05D009487 2.7e-20 101.7 71 70.4
Cc09_g03530 Coffea canephora HOM05D007503 ORTHO05D009487 5.9e-20 100.5 71 74.6
ECA232G1405 Erigeron canadensis HOM05D007503 ORTHO05D009487 2.3e-19 98.6 65 72.3
TWI56G0335 Tripterygium wilfordii HOM05D007503 ORTHO05D009487 6.6e-19 97.1 65 67.7
Prupe.3G011500 Prunus persica HOM05D007503 ORTHO05D009487 8.6e-19 96.7 74 67.6
RcHm_v2.0_Chr3g0487701 Rosa chinensis HOM05D007503 ORTHO05D009487 1.9e-18 95.5 73 69.9
Haze_14049 Corylus avellana HOM05D007503 ORTHO05D009487 2.5e-18 95.1 65 73.8
Haze_14060 Corylus avellana HOM05D007503 ORTHO05D009487 2.5e-18 95.1 65 73.8
FvH4_1g27230 Fragaria vesca HOM05D007503 ORTHO05D009487 2.5e-18 95.1 71 70.4
FAN19G2707 Fragaria x ananassa HOM05D007503 ORTHO05D009487 2.5e-18 95.1 71 70.4
FAN23G0073 Fragaria x ananassa HOM05D007503 ORTHO05D009487 2.5e-18 95.1 71 70.4
MD17G1272500 Malus domestica HOM05D007503 ORTHO05D009487 2.5e-18 95.1 72 68.1
CANSAT80G2883 Cannabis sativa HOM05D007503 ORTHO05D009487 3.3e-18 94.7 66 71.2
FAN26G0784 Fragaria x ananassa HOM05D000757 ORTHO05D000622 5.5e-18 94.0 69 72.5
Hund06856 Selenicereus undatus HOM05D007503 ORTHO05D009487 7.2e-18 93.6 68 69.1
THA.LOC104822606 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 7.2e-18 93.6 65 67.7
A01p39280 Brassica napus HOM05D007503 ORTHO05D009487 9.5e-18 93.2 78 62.8
CiPaw.03G009100 Carya illinoinensis HOM05D007503 ORTHO05D009487 9.5e-18 93.2 64 73.4
BcaC09g48410 Brassica carinata HOM05D007503 ORTHO05D009487 1.2e-17 92.8 64 68.8
Gohir.A11G170200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 1.2e-17 92.8 76 59.2
Gohir.D11G177200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 1.2e-17 92.8 76 59.2
Gorai.007G189300 Gossypium raimondii HOM05D007503 ORTHO05D009487 1.2e-17 92.8 76 59.2
Sc09g0004610 Simmondsia chinensis HOM05D007503 ORTHO05D009487 1.2e-17 92.8 73 67.1
C01p50080 Brassica napus HOM05D007503 ORTHO05D009487 1.6e-17 92.4 78 61.5
BolC1t04962H Brassica oleracea HOM05D007503 ORTHO05D009487 1.6e-17 92.4 78 61.5
THA.LOC104815587 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 1.6e-17 92.4 65 69.2
PSO729G0165 Papaver somniferum HOM05D007503 ORTHO05D009487 2.1e-17 92.0 65 67.7
SalBow6G4878 Salvia bowleyana HOM05D007503 ORTHO05D009487 2.1e-17 92.0 60 73.3
BraA01t03971Z Brassica rapa HOM05D007503 ORTHO05D009487 2.8e-17 91.7 78 61.5
QL02p056384 Quercus lobata HOM05D007503 ORTHO05D009487 2.8e-17 91.7 66 72.7
Lalb_Chr20g0117211 Lupinus albus HOM05D007503 ORTHO05D009487 3.6e-17 91.3 59 74.6
Ciclev10013261m.g Citrus clementina HOM05D007503 ORTHO05D009487 4.7e-17 90.9 69 65.2
Migut.F01879 Erythranthe guttata HOM05D007503 ORTHO05D009487 4.7e-17 90.9 56 76.8
Eucgr.I00239 Eucalyptus grandis HOM05D007503 ORTHO05D009487 6.1e-17 90.5 72 66.7
Phvul.006G084000 Phaseolus vulgaris HOM05D007503 ORTHO05D009487 6.1e-17 90.5 71 66.2
Nitab4.5_0001653g0060 Nicotiana tabacum HOM05D007503 ORTHO05D009487 1.0e-16 89.7 61 72.1
Nitab4.5_0011656g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 1.0e-16 89.7 56 76.8
Nn1g09784 Nelumbo nucifera HOM05D007503 ORTHO05D009487 1.4e-16 89.4 73 65.8
Duzib211G0566 Durio zibethinus HOM05D007503 ORTHO05D009487 2.3e-16 88.6 76 60.5
Thhalv10021919m.g Eutrema salsugineum HOM05D007503 ORTHO05D009487 2.3e-16 88.6 78 61.5
Glyma.18G047300 Glycine max HOM05D007503 ORTHO05D009487 2.3e-16 88.6 71 64.8
Potri.014G105250 Populus trichocarpa HOM05D007503 ORTHO05D009487 2.3e-16 88.6 67 68.7
Aqoxy5G03063 Aquilegia oxysepala HOM05D007503 ORTHO05D009487 3.0e-16 88.2 60 75.0
Glyma.11G203700 Glycine max HOM05D007503 ORTHO05D009487 3.0e-16 88.2 71 64.8
MD09G1282700 Malus domestica HOM05D007503 ORTHO05D009487 3.0e-16 88.2 72 63.9
A05p34950 Brassica napus HOM05D007503 ORTHO05D009487 4.0e-16 87.8 78 60.3
BraA05t22309Z Brassica rapa HOM05D007503 ORTHO05D009487 4.0e-16 87.8 78 60.3
Lj6g0027028 Lotus japonicus HOM05D007503 ORTHO05D009487 4.0e-16 87.8 71 66.2
Solyc03g058340.3 Solanum lycopersicum HOM05D007503 ORTHO05D009487 4.0e-16 87.8 73 63.0
Sopen03g015570 Solanum pennellii HOM05D007503 ORTHO05D009487 4.0e-16 87.8 73 63.0
BcaB06g25385 Brassica carinata HOM05D007503 ORTHO05D009487 5.2e-16 87.4 78 60.3
BolC5t33967H Brassica oleracea HOM05D007503 ORTHO05D009487 5.2e-16 87.4 78 60.3
AL3G26810 Arabidopsis lyrata HOM05D007503 ORTHO05D009487 6.8e-16 87.0 78 59.0
AT3G14430 Arabidopsis thaliana HOM05D007503 ORTHO05D009487 6.8e-16 87.0 78 59.0
CARHR089340 Cardamine hirsuta HOM05D007503 ORTHO05D009487 6.8e-16 87.0 78 57.7
CDE05G2177 Ceratophyllum demersum HOM05D007503 ORTHO05D009487 6.8e-16 87.0 71 60.6
Sp3g12730 Schrenkiella parvula HOM05D007503 ORTHO05D009487 8.9e-16 86.7 78 59.0
Thecc.09G340100 Theobroma cacao HOM05D007503 ORTHO05D009487 8.9e-16 86.7 76 60.5
unitig_0.g938 Utricularia gibba HOM05D001953 ORTHO05D001904 8.9e-16 86.7 56 73.2
Aa31LG8G1690 Aethionema arabicum HOM05D007503 ORTHO05D009487 1.2e-15 86.3 64 65.6
Carub.0003s1415 Capsella rubella HOM05D007503 ORTHO05D009487 1.2e-15 86.3 78 57.7
C05p52900 Brassica napus HOM05D007503 ORTHO05D009487 2.0e-15 85.5 78 60.3
BcaC05g29084 Brassica carinata HOM05D007503 ORTHO05D009487 2.6e-15 85.1 78 59.0
CAN.G326.18 Capsicum annuum HOM05D007503 ORTHO05D009487 3.4e-15 84.7 73 61.6
COL.COLO4_13441 Corchorus olitorius HOM05D007503 ORTHO05D009487 4.4e-15 84.3 58 69.0
Medtr3g063970 Medicago truncatula HOM05D007503 ORTHO05D009487 5.7e-15 84.0 72 59.7
Nitab4.5_0002233g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 1.3e-14 82.8 80 60.0
Peaxi162Scf00253g00725 Petunia axillaris HOM05D007503 ORTHO05D009487 2.9e-14 81.6 74 59.5
PGR119G1426 Punica granatum HOM05D007503 ORTHO05D009487 8.3e-14 80.1 64 65.6
Sed0018329 Sechium edule HOM05D007503 ORTHO05D009487 8.3e-14 80.1 67 59.7
Zm00001eb036330 Zea mays HOM05D007503 ORTHO05D009487 1.4e-13 79.3 64 62.5
Os08g0528601 Oryza sativa ssp. japonica HOM05D007503 ORTHO05D009487 1.8e-13 79.0 64 65.6
Zm00001eb175060 Zea mays HOM05D007503 ORTHO05D009487 1.8e-13 79.0 64 62.5
ClCG01G008330 Citrullus lanatus HOM05D007503 ORTHO05D009487 2.4e-13 78.6 67 56.7
MELO3C025073.2 Cucumis melo HOM05D007503 ORTHO05D009487 4.1e-13 77.8 67 55.2
Sabra02G0134700 Salix brachista HOM05D007503 ORTHO05D009487 1.6e-12 75.9 66 56.1
CsaV3_5G020250 Cucumis sativus L. HOM05D007503 ORTHO05D009487 2.7e-12 75.1 67 53.7
Sabra14G0077600 Salix brachista HOM05D007503 ORTHO05D009487 5.9e-12 73.9 58 67.2
Pp3c11_25150 Physcomitrium patens HOM05D007503 ORTHO05D009487 7.8e-12 73.6 55 69.1
Aa31LG10G1620 Aethionema arabicum HOM05D007503 ORTHO05D009487 1.5e-10 69.3 63 54.0
CSS0042421 Camellia sinensis var. sinensis HOM05D007503 ORTHO05D009487 1.5e-10 69.3 49 71.4
Pp3c7_7140 Physcomitrium patens HOM05D007503 ORTHO05D009487 9.5e-10 66.6 59 61.0
Cpa.g.c46349 Carica papaya HOM05D007503 ORTHO05D009487 1.6e-09 65.9 78 46.2
Cpa.g.sc44.91 Carica papaya HOM05D007503 ORTHO05D009487 1.6e-09 65.9 78 46.2
Lsat_1_v5_gn_9_48861 Lactuca sativa HOM05D007503 ORTHO05D009487 3.1e-08 61.6 53 62.3
HanXRQChr14g0445891 Helianthus annuus HOM05D007503 ORTHO05D009487 1.5e-07 59.3 51 64.7
TAR392G0002 Trochodendron aralioides HOM05D007503 ORTHO05D009487 2.0e-07 58.9 44 72.7
BcaC02g09481 Brassica carinata HOM05D007503 ORTHO05D009487 7.5e-07 57.0 48 66.7
Mapoly0109s0063 Marchantia polymorpha HOM05D007503 ORTHO05D009487 2.2e-06 55.5 38 81.6
PGSC0003DMG400000976 Solanum tuberosum HOM05D007503 ORTHO05D009487 6.4e-06 53.9 50 60.0
TPR.G29629 Trifolium pratense HOM05D007503 ORTHO05D009487 6.4e-06 53.9 48 66.7


User provided reference genes

Program Settings