Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 1.1e-127 459.9 223 100.0
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 1.5e-95 353.2 222 76.1
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 1.5e-95 353.2 208 79.8
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 1.2e-94 350.1 216 78.2
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 4.7e-94 348.2 214 77.1
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 1.4e-93 346.7 216 77.3
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 1.4e-93 346.7 216 75.9
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 4.4e-92 341.7 207 75.8
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 2.8e-91 339.0 214 74.3
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 8.2e-91 337.4 218 72.9
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 1.1e-90 337.0 222 72.1
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 1.4e-90 336.7 210 73.3
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 1.4e-90 336.7 210 74.8
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.4e-90 336.7 210 74.8
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.4e-90 336.7 210 74.8
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 1.8e-90 336.3 218 73.4
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 1.8e-90 336.3 210 74.8
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 2.4e-90 335.9 210 74.3
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.4e-90 335.9 210 74.3
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 3.1e-90 335.5 210 75.2
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 5.3e-90 334.7 223 73.1
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 7.0e-90 334.3 212 73.1
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 9.1e-90 334.0 211 74.4
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 9.1e-90 334.0 202 75.7
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 9.1e-90 334.0 210 75.7
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 1.2e-89 333.6 219 69.4
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.2e-89 333.6 210 73.8
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 2.0e-89 332.8 202 77.7
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 2.0e-89 332.8 210 74.3
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 3.5e-89 332.0 202 79.2
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 4.5e-89 331.6 205 75.1
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 4.5e-89 331.6 205 75.1
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 4.5e-89 331.6 202 76.2
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 5.9e-89 331.3 210 74.8
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 1.3e-88 330.1 209 73.2
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 2.2e-88 329.3 202 75.7
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 2.9e-88 328.9 210 74.8
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 3.8e-88 328.6 208 74.0
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 5.0e-88 328.2 216 71.3
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 6.5e-88 327.8 199 75.9
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 8.5e-88 327.4 210 72.4
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 1.1e-87 327.0 209 72.7
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.5e-87 326.6 212 70.8
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 1.9e-87 326.2 209 72.7
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 1.9e-87 326.2 213 72.8
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 3.2e-87 325.5 213 71.4
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 4.2e-87 325.1 202 73.3
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 4.2e-87 325.1 209 71.8
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 5.5e-87 324.7 202 73.8
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 7.2e-87 324.3 211 72.5
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 7.2e-87 324.3 218 72.0
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 9.4e-87 323.9 216 70.8
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.2e-86 323.6 210 72.4
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 1.6e-86 323.2 216 70.4
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 1.6e-86 323.2 202 74.3
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 1.6e-86 323.2 205 73.2
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 2.1e-86 322.8 218 69.3
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 2.1e-86 322.8 218 69.3
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 2.7e-86 322.4 202 72.3
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 8.0e-86 320.9 213 70.9
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 2.3e-85 319.3 210 71.9
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 3.0e-85 318.9 201 72.6
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 3.0e-85 318.9 219 68.0
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 4.0e-85 318.5 209 70.3
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 6.8e-85 317.8 207 71.5
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 1.5e-84 316.6 209 71.8
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 2.0e-84 316.2 203 71.4
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 2.0e-84 316.2 212 70.3
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 2.0e-84 316.2 202 72.8
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 3.4e-84 315.5 202 72.3
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 4.4e-84 315.1 201 71.6
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 4.4e-84 315.1 202 72.3
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 5.7e-84 314.7 216 69.0
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 9.8e-84 313.9 202 71.8
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 9.8e-84 313.9 202 74.8
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 9.8e-84 313.9 208 69.7
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 9.8e-84 313.9 202 71.8
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 1.3e-83 313.5 209 68.9
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 1.3e-83 313.5 202 71.3
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 1.3e-83 313.5 202 71.3
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 1.3e-83 313.5 225 68.4
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 1.3e-83 313.5 202 70.3
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 2.2e-83 312.8 206 71.4
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 2.2e-83 312.8 217 68.2
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 2.8e-83 312.4 202 70.8
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 3.7e-83 312.0 204 74.0
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 4.8e-83 311.6 202 70.8
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 6.3e-83 311.2 202 70.8
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 6.3e-83 311.2 257 60.7
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 1.1e-82 310.5 202 70.8
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 1.1e-82 310.5 202 70.8
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 1.4e-82 310.1 202 70.8
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 1.8e-82 309.7 202 70.3
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.8e-82 309.7 201 70.1
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 2.4e-82 309.3 199 70.9
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 4.1e-82 308.5 202 70.8
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 7.0e-82 307.8 202 70.3
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 1.6e-81 306.6 200 70.5
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 2.7e-81 305.8 202 71.8
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 2.7e-81 305.8 208 68.8
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 4.2e-79 298.5 172 80.2
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 1.0e-77 293.9 215 63.7
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 3.4e-76 288.9 214 64.5
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 2.0e-73 279.6 211 64.5
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 2.9e-72 275.8 304 48.4
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 6.6e-72 274.6 212 64.6
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.6e-65 253.4 171 69.0
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 4.6e-65 251.9 148 78.4
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 5.6e-63 245.0 222 59.5
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 4.7e-62 241.9 134 84.3
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 1.0e-61 240.7 271 50.2
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.5e-60 236.9 249 52.2
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 1.4e-58 230.3 173 65.3
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 6.6e-56 221.5 192 53.6
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 5.6e-55 218.4 199 51.3
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 3.4e-52 209.1 191 52.4
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 4.9e-51 205.3 145 64.8
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 1.1e-47 194.1 119 76.5
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 6.2e-46 188.3 154 60.4
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 5.8e-44 181.8 181 44.8
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 3.8e-43 179.1 106 80.2
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 6.4e-43 178.3 169 55.0
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 3.9e-40 169.1 106 70.8
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 5.1e-40 168.7 194 46.4
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 1.1e-39 167.5 114 67.5
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.9e-39 166.8 100 79.0
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 1.2e-38 164.1 100 76.0
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 8.1e-38 161.4 100 78.0
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 1.5e-36 157.1 97 76.3
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 3.9e-32 142.5 87 80.5
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 1.5e-31 140.6 108 63.0
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 2.4e-29 133.3 94 66.0
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 9.3e-26 121.3 206 33.0
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 3.5e-25 119.4 100 55.0
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 1.5e-23 114.0 89 64.0
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 1.5e-23 114.0 89 64.0
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 2.5e-23 113.2 69 76.8
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 2.5e-23 113.2 72 75.0
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 2.5e-23 113.2 72 75.0
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 7.4e-23 111.7 71 74.6
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 4.8e-22 109.0 173 39.3
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 8.1e-22 108.2 82 59.8
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 4.2e-18 95.9 102 51.0
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 8.7e-16 88.2 124 33.9
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 1.1e-15 87.8 63 60.3
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 5.3e-13 79.0 173 29.5
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 6.9e-13 78.6 52 76.9
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 6.9e-13 78.6 52 76.9
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 4.5e-12 75.9 74 51.4
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 7.6e-12 75.1 49 71.4
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 3.8e-11 72.8 42 83.3
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 1.1e-10 71.2 57 56.1
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 2.1e-09 67.0 56 60.7
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 6.0e-09 65.5 55 60.0
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 3.0e-08 63.2 42 71.4
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 3.0e-08 63.2 42 71.4
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 3.9e-08 62.8 81 42.0
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 8.7e-08 61.6 40 70.0
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 5.7e-07 58.9 54 46.3


User provided reference genes

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