Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 1.8e-70 269.2 149 100.0
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 8.6e-36 154.1 157 66.9
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 1.5e-32 143.3 133 63.2
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 7.6e-32 141.0 156 62.2
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 1.3e-31 140.2 137 67.9
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 2.2e-31 139.4 137 67.2
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 3.8e-31 138.7 134 67.9
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 1.1e-30 137.1 133 64.7
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.4e-30 136.7 137 67.2
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.4e-30 136.7 133 69.9
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 1.9e-30 136.3 133 69.9
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 2.4e-30 136.0 154 63.0
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 2.4e-30 136.0 137 66.4
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 3.2e-30 135.6 156 62.2
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 4.1e-30 135.2 156 62.2
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 4.1e-30 135.2 155 59.4
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 5.4e-30 134.8 159 60.4
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 7.1e-30 134.4 138 66.7
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 1.2e-29 133.7 134 66.4
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 1.2e-29 133.7 135 68.1
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.2e-29 133.7 133 68.4
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 6.0e-29 131.3 134 63.4
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 7.8e-29 131.0 134 62.7
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 7.8e-29 131.0 130 66.2
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 1.7e-28 129.8 134 61.9
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 1.7e-28 129.8 134 61.9
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 1.7e-28 129.8 135 65.2
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 3.0e-28 129.0 133 63.2
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 3.0e-28 129.0 138 63.8
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 3.0e-28 129.0 138 63.8
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 5.1e-28 128.3 134 61.9
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 6.6e-28 127.9 131 64.9
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 8.7e-28 127.5 134 63.4
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 8.7e-28 127.5 134 63.4
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 8.7e-28 127.5 133 63.2
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 1.5e-27 126.7 133 63.2
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 1.5e-27 126.7 131 65.6
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 1.5e-27 126.7 157 59.9
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 1.5e-27 126.7 156 59.0
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 1.5e-27 126.7 133 61.7
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 1.9e-27 126.3 134 61.9
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 1.9e-27 126.3 133 65.4
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 1.9e-27 126.3 132 64.4
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 1.9e-27 126.3 137 64.2
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 1.9e-27 126.3 135 64.4
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 2.5e-27 125.9 135 61.5
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 2.5e-27 125.9 153 59.5
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 3.3e-27 125.6 134 61.9
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 3.3e-27 125.6 138 63.0
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 3.3e-27 125.6 131 64.1
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 5.6e-27 124.8 152 58.6
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 7.3e-27 124.4 131 63.4
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 7.3e-27 124.4 131 63.4
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 9.6e-27 124.0 133 61.7
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 1.2e-26 123.6 133 60.9
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 1.2e-26 123.6 136 61.8
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 2.8e-26 122.5 133 62.4
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 2.8e-26 122.5 133 62.4
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 2.8e-26 122.5 133 62.4
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 2.8e-26 122.5 154 57.1
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 2.8e-26 122.5 84 79.8
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 2.8e-26 122.5 145 60.0
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 3.6e-26 122.1 130 60.8
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 3.6e-26 122.1 149 58.4
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 4.7e-26 121.7 135 60.0
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 1.4e-25 120.2 139 61.9
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 1.4e-25 120.2 133 60.9
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 1.4e-25 120.2 131 62.6
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 1.8e-25 119.8 136 60.3
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 1.8e-25 119.8 153 56.9
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 1.8e-25 119.8 108 67.6
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 3.1e-25 119.0 131 63.4
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 3.1e-25 119.0 133 61.7
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 5.2e-25 118.2 152 57.2
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 5.2e-25 118.2 136 61.8
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 6.9e-25 117.9 132 59.8
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 9.0e-25 117.5 147 58.5
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 9.0e-25 117.5 147 58.5
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 2.6e-24 115.9 149 59.1
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 2.6e-24 115.9 160 56.9
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 1.7e-23 113.2 97 68.0
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 2.2e-23 112.8 146 56.2
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 2.2e-23 112.8 142 55.6
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 2.2e-23 112.8 170 50.6
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 3.8e-23 112.1 148 59.5
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 6.4e-23 111.3 148 54.1
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 1.1e-22 110.5 146 56.8
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 1.1e-22 110.5 149 57.0
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 1.1e-22 110.5 163 55.2
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 1.9e-22 109.8 76 75.0
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 2.4e-22 109.4 138 58.7
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 3.2e-22 109.0 157 56.7
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 9.3e-22 107.5 132 61.4
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 1.6e-21 106.7 142 54.2
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 1.6e-21 106.7 75 74.7
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 2.1e-21 106.3 153 51.0
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 2.7e-21 105.9 89 71.9
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 2.7e-21 105.9 89 71.9
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 2.7e-21 105.9 164 48.2
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 3.5e-21 105.5 131 57.3
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 4.6e-21 105.1 130 57.7
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 4.6e-21 105.1 127 57.5
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 6.0e-21 104.8 138 58.0
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 7.8e-21 104.4 136 60.3
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 3.0e-20 102.4 119 55.5
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 3.0e-20 102.4 159 47.2
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 3.9e-20 102.1 158 52.5
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 3.9e-20 102.1 131 60.3
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 5.1e-20 101.7 66 83.3
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 1.9e-19 99.8 123 61.8
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 2.5e-19 99.4 133 53.4
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 5.6e-19 98.2 157 52.2
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 7.3e-19 97.8 86 68.6
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 1.3e-18 97.1 77 68.8
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 2.1e-18 96.3 133 53.4
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 3.6e-18 95.5 144 54.2
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 1.8e-17 93.2 130 53.8
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 4.0e-17 92.0 153 47.7
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 3.4e-16 89.0 113 54.0
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 3.2e-14 82.4 57 77.2
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 9.6e-11 70.9 119 49.6
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 1.3e-10 70.5 129 48.1
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 2.4e-09 66.2 103 52.4
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 4.0e-09 65.5 118 47.5
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 1.2e-08 63.9 108 43.5
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 9.9e-08 60.8 102 47.1
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 1.4e-06 57.0 119 44.5


User provided reference genes

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